ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HXT1_YEAST (P32465) Low-affinity glucose transporter HXT1 28 7.2
2T3MO_ECOLI (P12364) Type III restriction-modification system Eco... 28 7.2

>HXT1_YEAST (P32465) Low-affinity glucose transporter HXT1|
          Length = 570

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 346 LSDQAMTALTFDIGIIHXFSICCIIYAI 263
           LSD   T++ F  G+++ FS CC +Y +
Sbjct: 356 LSDSFETSIVF--GVVNFFSTCCSLYTV 381



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>T3MO_ECOLI (P12364) Type III restriction-modification system EcoP15I enzyme|
           mod (EC 2.1.1.72) (EcoP15I methyltransferase)
           (M.EcoP15I)
          Length = 645

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 135 IQARNHS*LLSQQSYNF--VKNLDVRVSEKFSSPY*GNK 25
           +  +N   L+S+   N   VKNL V + E+F+S Y GN+
Sbjct: 246 VYTKNKEQLISEWKSNISDVKNLLVNIGEEFASKYTGNE 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,343,413
Number of Sequences: 219361
Number of extensions: 502000
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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