| Clone Name | rbaal19f05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full insert sequence Length = 1157 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 343 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789 Query: 344 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 403 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729 Query: 404 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 463 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 728 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 669 Query: 464 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 523 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 668 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 609 Query: 524 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 583 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 608 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 549 Query: 584 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 643 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 548 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 489 Query: 644 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 703 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 488 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 429 Query: 704 tgcggcagaagaagatcatcggtgcttcc 732 |||||||||||||||||| ||| |||||| Sbjct: 428 tgcggcagaagaagatcaccggcgcttcc 400
>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full insert sequence Length = 1725 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 343 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455 Query: 344 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 403 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395 Query: 404 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 463 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1394 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1335 Query: 464 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 523 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1334 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1275 Query: 524 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 583 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1274 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1215 Query: 584 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 643 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1214 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1155 Query: 644 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 703 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1154 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 1095 Query: 704 tgcggcagaagaagatcatcggtgcttcc 732 |||||||||||||||||| ||| |||||| Sbjct: 1094 tgcggcagaagaagatcaccggcgcttcc 1066
>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full insert sequence Length = 1705 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 343 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381 Query: 344 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 403 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321 Query: 404 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 463 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1320 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1261 Query: 464 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 523 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1260 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1201 Query: 524 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 583 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1200 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1141 Query: 584 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 643 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1140 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1081 Query: 644 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 703 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1080 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 1021 Query: 704 tgcggcagaagaagatcatcggtgcttcc 732 |||||||||||||||||| ||| |||||| Sbjct: 1020 tgcggcagaagaagatcaccggcgcttcc 992
>gb|AY106153.1| Zea mays PCO079304 mRNA sequence Length = 1709 Score = 281 bits (142), Expect = 2e-72 Identities = 462/566 (81%), Gaps = 2/566 (0%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1587 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1528 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | ||||||| | | |||||||||||||| | || |||||||| ||||| ||||| | Sbjct: 1527 attgctcttgttcatgcaggttggaagggatcttgtcgtaaacatcagtgaaaagctcag 1468 Query: 284 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 342 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1467 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1409 Query: 343 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 402 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1408 actctgctcctgagctcagattcttcagcatcagaccaccagtcattaccctgaacccat 1349 Query: 403 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 462 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1348 tttctgtatctggaaatcggatccctcgctgttcgccaatgctcaatctcatcaactggc 1289 Query: 463 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcg 522 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct: 1288 ctgtacttggtcgaatcatcggatgtcgagtgatggccgactcggtaagtcagtgcctca 1229 Query: 523 attaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtac 582 | |||||| || ||||||||||||| ||||||||| ||||| | || | ||| |||||| Sbjct: 1228 actaaaattggtcttccttcagttacagccatttctcgggcagcatggattgcgctgtac 1169 Query: 583 acagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgg 642 |||||||||| ||| ||||| |||| | ||| | || || || || ||||| || ||| Sbjct: 1168 acagcaagagcatcattgccatctactcggatgccacggatcccataagcctggccacgg 1109 Query: 643 gtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattg 702 |||||||||| ||||||||||| ||||| | || || |||||||| ||||| |||||| Sbjct: 1108 ataacaactccatcacttctgaattgttcagtagtcggagtgctgatggcccagccattg 1049 Query: 703 ttgcggcagaagaagatcatcggtgc 728 ||||||||||||||||||| |||||| Sbjct: 1048 ttgcggcagaagaagatcaccggtgc 1023
>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence Length = 1349 Score = 268 bits (135), Expect = 2e-68 Identities = 455/559 (81%), Gaps = 2/559 (0%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1241 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1182 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | ||||||| | | |||||||||||||| | ||| |||||||| ||||| ||||| | Sbjct: 1181 attgctcttgttcatgcaggttggaagggatcttatcgtaaacatcagtgaaaagctcag 1122 Query: 284 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 342 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1121 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1063 Query: 343 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 402 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1062 actctgctcctgaggtcagattcttcagcatcagaccaccagtcattaccctgaacccat 1003 Query: 403 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 462 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1002 tttctgtatctggaaattggatccctcgctgttcgccaatgctcaatctcatcaactggc 943 Query: 463 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcg 522 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct: 942 ctgtacttggtcgaatcatcggatgtcgagtgatggccgactcggtaagtcagtgcctca 883 Query: 523 attaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtac 582 | |||||| || ||||||||||||| ||||||||| ||||| | || | ||| |||||| Sbjct: 882 actaaaattggtcttccttcagttacagccatttctcgggcagcatggattgcgctgtac 823 Query: 583 acagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgg 642 |||||||||| ||| ||||| |||| | ||| | || || || || ||||| || ||| Sbjct: 822 acagcaagagcatcattgccatctactcggatgccacggatcccataagcctggccacgg 763 Query: 643 gtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattg 702 | |||||||| ||||||||||| ||||| | || || |||||||| ||||| ||||| Sbjct: 762 atgacaactccatcacttctgaattgttcagtagtcggagtgctgatggcccagccatta 703 Query: 703 ttgcggcagaagaagatca 721 ||||||||||||||||||| Sbjct: 702 ttgcggcagaagaagatca 684
>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence Length = 1695 Score = 234 bits (118), Expect = 3e-58 Identities = 393/482 (81%), Gaps = 2/482 (0%) Strand = Plus / Minus Query: 241 aggttggaagggatttgatcataaacatctgtgaagagctccgcaagcccgtgttttggc 300 |||||||||||||| | ||| |||||||| ||||| ||||| | || | |||||||| Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395 Query: 301 atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 360 || || || || ||||| |||||||| || ||||||| ||||| || ||||||| | Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335 Query: 361 gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 420 || |||| || | | ||||||| |||| |||||||||||||||||||| ||||| | Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275 Query: 421 ggatcccttgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcg 480 |||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| Sbjct: 1274 ggatccctcgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatca 1215 Query: 481 tcggatgtcgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttcct 540 ||||||||||||||||||||||||||||| |||| ||||| | |||||| || |||||| Sbjct: 1214 tcggatgtcgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttcct 1155 Query: 541 tcagttatagccatttcccgggcggtgtgcactgc-actgtacacagcaagagtatcgtt 599 ||||||| ||||||||| ||||| | || | ||| |||||||||||||||| ||| || Sbjct: 1154 tcagttacagccatttctcgggcagcatgga-tgcgcctgtacacagcaagagcatcatt 1096 Query: 600 gccgtctagcctgatactgcgtattccgtaggcctgaccccgggtaacaactccgtcact 659 ||| |||| | ||| | || || || || ||||| || ||| | |||||||| ||||| Sbjct: 1095 gccatctactcggatgccacggatcccataagcctggccacggatgacaactccatcact 1036 Query: 660 tctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaagat 719 |||||| ||||| | || || |||||||| ||||| ||||| ||||||||||||||||| Sbjct: 1035 tctgaattgttcagtagtcggagtgctgatggcccagccattattgcggcagaagaagat 976 Query: 720 ca 721 || Sbjct: 975 ca 974
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 333 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 392 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615 Query: 393 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 452 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211614 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211555 Query: 453 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 512 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211554 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211495 Query: 513 ca 514 || Sbjct: 4211494 ca 4211493 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 525 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 584 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211413 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211354 Query: 585 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 644 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211353 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211294 Query: 645 aacaactccgtcac 658 |||| |||| |||| Sbjct: 4211293 aacagctccatcac 4211280 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 657 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 716 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 4211198 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 4211139 Query: 717 gatcatcggtgcttcc 732 ||||| ||| |||||| Sbjct: 4211138 gatcaccggcgcttcc 4211123 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211811 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 334 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211810 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211760
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 333 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 392 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602 Query: 393 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 452 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211601 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211542 Query: 453 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 512 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211541 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211482 Query: 513 ca 514 || Sbjct: 4211481 ca 4211480 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 525 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 584 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211400 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211341 Query: 585 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 644 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211340 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211281 Query: 645 aacaactccgtcac 658 |||| |||| |||| Sbjct: 4211280 aacagctccatcac 4211267 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 657 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 716 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 4211185 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 4211126 Query: 717 gatcatcggtgcttcc 732 ||||| ||| |||||| Sbjct: 4211125 gatcaccggcgcttcc 4211110 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Minus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211798 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 334 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211797 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211747
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 333 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 392 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168 Query: 393 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 452 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 72169 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 72228 Query: 453 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 512 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 72229 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 72288 Query: 513 ca 514 || Sbjct: 72289 ca 72290 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Plus Query: 525 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 584 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 72370 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 72429 Query: 585 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 644 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 72430 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 72489 Query: 645 aacaactccgtcac 658 |||| |||| |||| Sbjct: 72490 aacagctccatcac 72503 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 657 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 716 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 72585 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 72644 Query: 717 gatcatcggtgcttcc 732 ||||| ||| |||||| Sbjct: 72645 gatcaccggcgcttcc 72660 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Plus Query: 164 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 223 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912 Query: 224 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 283 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 71972 Query: 284 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 334 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 71973 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 72023
>gb|AF251067.1|AF251067 Oryza sativa branched chain alpha-keto acid dehydrogenase E1-alpha subunit mRNA, partial cds Length = 258 Score = 127 bits (64), Expect = 6e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 581 acacagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgacccc 640 |||||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| | Sbjct: 258 acacagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccac 199 Query: 641 gggtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccat 700 || ||||| |||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 198 ggataacagctccatcacttctgaactgttcactagttggggtgctgattgtccagccat 139 Query: 701 tgttgcggcagaagaagatcatcggtgcttcc 732 ||||||||||||||||||||| ||| |||||| Sbjct: 138 tgttgcggcagaagaagatcaccggcgcttcc 107
>emb|AL021480.1|CEY39E4A Caenorhabditis elegans YAC Y39E4A, complete sequence Length = 26209 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 478 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 524 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 18640 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 18686
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence Length = 129617 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 463 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactc 505 |||||||||||||||||||||||||| || || ||||| |||| Sbjct: 57722 ctgtacttggttgaatcgtcggatgtagaatggtggcctactc 57680
>ref|NM_001038287.1| Caenorhabditis elegans Y39E4A.3a (Transketolase) mRNA, complete cds Length = 1400 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 478 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 524 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|NM_001038288.1| Caenorhabditis elegans Y39E4A.3b (Transketolase) mRNA, complete cds Length = 1677 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 478 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 524 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|XM_756727.1| Ustilago maydis 521 hypothetical protein (UM05673.1) partial mRNA Length = 2361 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 478 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 524 ||||| || |||||||| || ||||| ||||||||||| |||||||| Sbjct: 1997 tcgtccgaggtcgagtggtgaccgacgcggtaggtcatagcctcgat 1951
>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840 mRNA, complete cds Length = 1004 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence Length = 160846 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 agattttttggatgagcagtt 42 ||||||||||||||||||||| Sbjct: 16375 agattttttggatgagcagtt 16395
>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840) mRNA, complete cds Length = 870 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 754 ccatctcatcagccggcctgt 734
>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840; T9J14.21) mRNA, complete cds Length = 1000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 811 ccatctcatcagccggcctgt 791
>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like protein, complete cds, clone: RAFL22-32-J16 Length = 468 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 269 ccatctcatcagccggcctgt 249
>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 524 ccatctcatcagccggcctgt 504
>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 744 ccatctcatcagccggcctgt 724
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 73562 ccatctcatcagccggcctgt 73582
>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence Length = 1001 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ccatctcatcagccggcctgt 466 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,759,301 Number of Sequences: 3902068 Number of extensions: 5759301 Number of successful extensions: 149398 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149286 Number of HSP's gapped (non-prelim): 97 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)