ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FCR1_CANAL (O93870) Fluconazole resistance protein 1 30 3.9
2VG82_BPML5 (Q05298) Gene 82 protein (Gp82) 30 5.0
3SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III) 29 8.6

>FCR1_CANAL (O93870) Fluconazole resistance protein 1|
          Length = 517

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 517 GSLPCGKIKV---VCSVLPEDNSEGNGKHPSGHVLLFDSRAEKMPVSEDGYLDLSR 359
           G  PC +  +   +C V  E       KHPSG+V L ++R + +  S +  ++LSR
Sbjct: 38  GKKPCNRCTLDNKIC-VFTEKKKTKEKKHPSGYVELLEARLDILTRSLEKLIELSR 92



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>VG82_BPML5 (Q05298) Gene 82 protein (Gp82)|
          Length = 126

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -3

Query: 469 EDNSEGNGKHPSGHVLLFDSRAEKMPVSEDGYLDLSRQVVSVKSGGRLEIRMQAGDFSGS 290
           E + +G   H SGHVLL  ++    P   D      R+VV     G L I +   DF GS
Sbjct: 31  EGDFKGRVIHRSGHVLLAHAKGVVRPAGRDKVRRERRKVVHAGIVGEL-ISLLPQDFVGS 89

Query: 289 VVFPSKFSN 263
            +  + + N
Sbjct: 90  KIAYNPYEN 98



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>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)|
          Length = 580

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = -3

Query: 439 PSGHVLLFDSRAEKMPVSEDGYLDLSRQVVSVKSGGRLEIRMQAGDFSGSVVFPSKFSNI 260
           P G       R   + V +D + D S+     K  G +EIR++           ++FS +
Sbjct: 80  PPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVE----------QAEFSEL 129

Query: 259 SQKGFELGGCKVEINV 212
           +   +  GGC V++ V
Sbjct: 130 NLAAYVTGGCMVDMQV 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,890,149
Number of Sequences: 219361
Number of extensions: 1590743
Number of successful extensions: 3409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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