ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19e21 |
|---|---|
| Clone Library Name | barley_pub |
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 60.8 bits (146), Expect = 3e-09 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = -1 Query: 536 YHRVVSNVGGDPKAVYEAKVESPA-GVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIV 360 Y R V++VGG Y KV S GV V PA L F E + +Y +T V + Sbjct: 675 YTRTVTSVGG--AGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP-- 730 Query: 359 DGKYSFGSVTWSDGVHNVTSPIAVTW 282 G SFGS+ WSDG H V SP+A++W Sbjct: 731 SGSNSFGSIEWSDGKHVVGSPVAISW 756
>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)| (Cucumisin-like protein) Length = 749 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/88 (32%), Positives = 44/88 (50%) Frame = -1 Query: 536 YHRVVSNVGGDPKAVYEAKVESPAGVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIVD 357 + R V+NVG P +VY A V +P GV+ V P L F + + ++++ V + Sbjct: 665 FRRRVTNVG-PPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKV---VVKAKQMTP 720 Query: 356 GKYSFGSVTWSDGVHNVTSPIAVTWPES 273 GK G + W H+V SPI + P S Sbjct: 721 GKIVSGLLVWKSPRHSVRSPIVIYSPTS 748
>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)| Length = 731 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -1 Query: 536 YHRVVSNVGGDPKA-VYEAKVESPAGVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIV 360 ++R +++V P+A Y A + +P G+ V P L F+ ++ TL V G+ + Sbjct: 651 FNRTLTSVA--PQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSF--TLTVRGS---I 703 Query: 359 DGKYSFGSVTWSDGVHNVTSPIAVT 285 G S+ WSDGVH V SPI +T Sbjct: 704 KGFVVSASLVWSDGVHYVRSPITIT 728
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 32.3 bits (72), Expect = 1.0 Identities = 22/90 (24%), Positives = 42/90 (46%) Frame = +1 Query: 220 QSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPATARVIS 399 QS +TS +S+Y+ ++ S T++ T +P+L T ++ + P+T + Sbjct: 119 QSVETSTESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTSTTPSTDITSA 178 Query: 400 YARLRCSSSNTSLAGVTLASTPAGLSTLAS 489 + +TS+ T +ST ST +S Sbjct: 179 LPTTTSTKLSTSIPTSTTSSTSTTTSTSSS 208
>RPOA_LDVP (Q83017) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3616 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 Query: 15 CKVHTYNFPLCPLVTVCPHSTPIVXCTVVQSGINNIDHEIVLLL 146 C H + P CP+V C H+ C S N++ E+ +LL Sbjct: 2868 CDYHGHGHPHCPVVLPCGHAVGSGVCEQCSSSAMNLNTELDILL 2911
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 31.6 bits (70), Expect = 1.8 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Frame = +1 Query: 187 PSQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTI 366 P+ S S +S +T+ +AP+ + T++ T + + P+T Sbjct: 65 PTSTHTSSPSSTSTQSS-STAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTT 123 Query: 367 TGLPATARVISYARLRCS-SSNTSLAGVTLASTPAGLSTLAS*TAFGSPPTLLTTRW*VT 543 T P TA + S S+ T+ A T STP +T S T + T+ TT T Sbjct: 124 TAAPTTAATTTAVTTAASTSAETTTATATATSTPT-TTTPTSTTTTTATTTVPTTASTTT 182 Query: 544 ESLYXEKTAA 573 ++ T A Sbjct: 183 DTTTAATTTA 192
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 31.6 bits (70), Expect = 1.8 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Frame = +1 Query: 187 PSQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTI 366 P+ S S +S +T+ +AP+ + T++ T + + P+T Sbjct: 65 PTSTHTSSPSSTSTQSS-STAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTT 123 Query: 367 TGLPATARVISYARLRCS-SSNTSLAGVTLASTPAGLSTLAS*TAFGSPPTLLTTRW*VT 543 T P TA + S S+ T+ A T STP +T S T + T+ TT T Sbjct: 124 TAAPTTAATTTAVTTAASTSAETTTATATATSTPT-TTTPTSTTTTTATTTVPTTASTTT 182 Query: 544 ESLYXEKTAA 573 ++ T A Sbjct: 183 DTTTAATTTA 192
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 31.2 bits (69), Expect = 2.3 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = +1 Query: 223 SCDTSVATSLYM-DAAPALSGHVTAMGLVTLCTPSLHVTDPNEYL-PSTITGLPATARVI 396 S T T L++ DA+ +GH T + + +L + S T P PS+ + AT+ + Sbjct: 67 SASTGDTTPLHVTDASSVSTGHATPLHVTSLSSVSTGDTTPLPVTSPSSASSGHATSLPV 126 Query: 397 SYARLRCSSSNTSLAGVTLASTPAGLSTLAS*TAFGSPPTLLTTRW*VTES 549 + A + TSL +S G +TL T S T TT VT++ Sbjct: 127 TDASSLSTGHATSLHVTDASSVSTGHATLLHVTDASSASTGHTTSLPVTDA 177
>XLYB_BACSU (O34391) N-acetylmuramoyl-L-alanine amidase xlyB precursor (EC| 3.5.1.28) (Cell wall hydrolase) (Autolysin) Length = 317 Score = 30.4 bits (67), Expect = 3.9 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +1 Query: 217 KQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSL-HVTDPNEYLPSTITGLPATARV 393 K++ +S A+ ++ LSG + G S+ H+TDPN + LP TA Sbjct: 168 KKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTA-- 225 Query: 394 ISYARLRCSSSNTSLAGVTLASTP 465 S ++ +SS +GV ++P Sbjct: 226 -SASKSHAASSYPLPSGVIKVTSP 248
>DXR_MYCTU (P64012) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 413 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 205 QSKLKQSCDTSVATSLYMDAAPA-LSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPA 381 Q+ + C T+V + +AA A L+G + +V + LH D P+T+ + Sbjct: 314 QAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLD 373 Query: 382 TARVISYARLRCSSSNTSLAGVTLAST 462 R +AR R + + +A V +AST Sbjct: 374 AQR---WARERAQRAVSGMASVAIAST 397
>DXR_MYCBO (P64013) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 413 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 205 QSKLKQSCDTSVATSLYMDAAPA-LSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPA 381 Q+ + C T+V + +AA A L+G + +V + LH D P+T+ + Sbjct: 314 QAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLD 373 Query: 382 TARVISYARLRCSSSNTSLAGVTLAST 462 R +AR R + + +A V +AST Sbjct: 374 AQR---WARERAQRAVSGMASVAIAST 397
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 30.4 bits (67), Expect = 3.9 Identities = 28/95 (29%), Positives = 38/95 (40%) Frame = +1 Query: 241 ATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPATARVISYARLRCS 420 +TS + S VT T T S T E ST+T P+T+ V S S Sbjct: 408 STSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSS 467 Query: 421 SSNTSLAGVTLASTPAGLSTLAS*TAFGSPPTLLT 525 SS T + ST S+ + T+ +P T T Sbjct: 468 SSTTVTTPTSTESTSTSPSSTVT-TSTTAPSTSTT 501
>HSN2_RAT (Q6IFS7) Protein HSN2 precursor| Length = 434 Score = 30.0 bits (66), Expect = 5.1 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 564 LLVVQGLRHLPPGGEQRRWRPES 496 LL G HLPPGG W PE+ Sbjct: 75 LLRTVGQNHLPPGGSPTNWTPEA 97
>PHKG1_RAT (P13286) Phosphorylase b kinase gamma catalytic chain, skeletal| muscle isoform (EC 2.7.11.19) (Phosphorylase kinase gamma subunit 1) Length = 387 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -1 Query: 368 VIVDGKYSFGSVTW---SDGVHNVTSPIAVTWPESAGAA 261 +I+DGKY FGS W SD V ++ S V P+ +A Sbjct: 240 MIMDGKYQFGSPEWDDYSDTVKDLVSRFLVVQPQDRCSA 278
>PHKG1_MOUSE (P07934) Phosphorylase b kinase gamma catalytic chain, skeletal| muscle isoform (EC 2.7.11.19) (Phosphorylase kinase gamma subunit 1) Length = 387 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -1 Query: 368 VIVDGKYSFGSVTW---SDGVHNVTSPIAVTWPESAGAA 261 +I+DGKY FGS W SD V ++ S V P+ +A Sbjct: 240 MIMDGKYQFGSPEWDDYSDTVKDLVSRFLVVQPQDRCSA 278
>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)| (Protein kinase A interference protein) Length = 376 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = +1 Query: 190 SQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLV-TLCTPSLHVTDPNEYLPSTI 366 S + S S D+S ++S + + A S T+ T + SL T + PSTI Sbjct: 102 SDSSTSSSSSASSDSSSSSSFSISSTSATSESSTSSTQTSTSSSSSLSSTPSSSSSPSTI 161 Query: 367 TGLPATARVISYARLRCSSSNTSLA-GVTLAS 459 T P+T+ S S+ TS+ G T+ S Sbjct: 162 TSAPSTSSTPSTTAYNQGSTITSIINGKTILS 193
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 3 KESGCKVHTYNFPLCPLVTVCPHSTPIVXC 92 KE C++ FP CPL CPH+ P C Sbjct: 258 KEGRCRL----FPHCPLGRSCPHAHPTKVC 283
>NUP62_MOUSE (Q63850) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)| Length = 526 Score = 29.3 bits (64), Expect = 8.7 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Frame = +1 Query: 307 TLCTPSLHVTDPNEYLPSTITGLPATARVISYARLRCSSSNTSL---AGVTLASTPA--- 468 TL T + T P P+ T + S A SSS T L A VT A+TP+ Sbjct: 196 TLVTTTAGATQPAAAAPTAATTSAGSTLFASIAAAPASSSATGLSLPAPVTTAATPSAGT 255 Query: 469 -GLSTLAS*TAFGSPPTLLTT 528 G S A A G+ T TT Sbjct: 256 LGFSLKAPGAAPGASTTSTTT 276
>EPHA1_HUMAN (P21709) Ephrin type-A receptor 1 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EPH) Length = 976 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 95 RRAERNKQHRPRDRTIIMIQEDKLF 169 RRA+R +Q R RDR + +EDKL+ Sbjct: 571 RRAQRQRQQRQRDRATDVDREDKLW 595
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 29.3 bits (64), Expect = 8.7 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = -2 Query: 139 STISWSMLFIPLCTTV 92 ++I WS+LF+P+CTTV Sbjct: 27 ASIVWSVLFLPICTTV 42
>LEU2_GLOVI (Q7NFV7) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 473 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +3 Query: 291 GDGARDIVHAVAPRDG---PERVLAVDDHRVAGHG 386 G G++ IVH +AP G P +A D A HG Sbjct: 104 GSGSQGIVHVIAPEQGFTQPGMTIACGDSHTATHG 138
>YQR2_CAEEL (Q09307) Hypothetical protein F19C6.2| Length = 495 Score = 29.3 bits (64), Expect = 8.7 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = -1 Query: 548 DSVTYHRVVSNVGGDPKAVYE-AKVESPAG-VDAKVTPAKLVFDEEHRSLAYEITLAVAG 375 D V H ++++ D K V A +ESP V +V+ A L FDE+H S+ + + V+G Sbjct: 224 DRVMIHTIINDT--DWKEVTAVADIESPTDIVSHRVSLALLAFDEKHSSIPNGVDVPVSG 281
>DS_DROME (Q24292) Protein dachsous precursor (Adherin)| Length = 3503 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = -1 Query: 551 KDSVTYHRVVSNVGGDP----KAVYEAKV--ESPAGVDAKVTPAKLVFDEEHRSLAYEIT 390 K S+ H +V +P +AVY A + P+G AK + E+ +L+YEI Sbjct: 1647 KSSLNLHLIVQGSHNNPPRFLQAVYRATILENVPSGSFVLQVTAKSLHGAENANLSYEIP 1706 Query: 389 LAVAGNPVIVD 357 VA + VD Sbjct: 1707 AGVANDLFHVD 1717 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,658,346 Number of Sequences: 219361 Number of extensions: 1454247 Number of successful extensions: 4817 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4816 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
