ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_101194.2| Arabidopsis thaliana unknown protein AT1G13220 ... 40 2.0
2gb|AC007357.2|F3F19 Arabidopsis thaliana chromosome 1 BAC F3F19 ... 40 2.0
3gb|AC102639.5| Mus musculus chromosome 3, clone RP23-461I15, com... 38 8.1
4gb|AC121563.3| Mus musculus BAC clone RP23-198C23 from chromosom... 38 8.1
5gb|BC091100.1| Xenopus tropicalis hypothetical protein LOC594893... 38 8.1
6gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complet... 38 8.1
7gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosom... 38 8.1

>ref|NM_101194.2| Arabidopsis thaliana unknown protein AT1G13220 transcript variant
            AT1G13220.2 mRNA, complete cds
          Length = 3600

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 33   aactccaaggaaagatagaagagc 56
            |||||||| |||||||||||||||
Sbjct: 1208 aactccaaagaaagatagaagagc 1231



to top

>gb|AC007357.2|F3F19 Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence
          Length = 99758

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    aactccaaggaaagatagaagagc 56
             |||||||| |||||||||||||||
Sbjct: 90365 aactccaaagaaagatagaagagc 90388



to top

>gb|AC102639.5| Mus musculus chromosome 3, clone RP23-461I15, complete sequence
          Length = 199243

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     aactccaaggaaagataga 51
              |||||||||||||||||||
Sbjct: 141217 aactccaaggaaagataga 141235



to top

>gb|AC121563.3| Mus musculus BAC clone RP23-198C23 from chromosome 3, complete sequence
          Length = 208350

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     aactccaaggaaagataga 51
              |||||||||||||||||||
Sbjct: 146023 aactccaaggaaagataga 146005



to top

>gb|BC091100.1| Xenopus tropicalis hypothetical protein LOC594893, mRNA (cDNA clone
            IMAGE:7025461), partial cds
          Length = 1207

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   ctccaaggaaagatagaagagcg 57
            |||||||||||| ||||||||||
Sbjct: 1112 ctccaaggaaagctagaagagcg 1090



to top

>gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complete sequence
          Length = 134004

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    caactccaaggaaagatagaaga 54
             ||||||||||||||| |||||||
Sbjct: 99672 caactccaaggaaagttagaaga 99650



to top

>gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosome 8, complete sequence
          Length = 187666

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 31    ccaactccaaggaaagatagaag 53
             ||||||||||||||||| |||||
Sbjct: 46424 ccaactccaaggaaagacagaag 46402


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 535,926
Number of Sequences: 3902068
Number of extensions: 535926
Number of successful extensions: 31998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31991
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top