ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
2dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3ref|XM_482576.1| Oryza sativa (japonica cultivar-group), mRNA 76 2e-10
4dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
5gb|AY104515.1| Zea mays PCO140907 mRNA sequence 62 3e-06
6ref|XM_421378.1| PREDICTED: Gallus gallus similar to TNF recepto... 42 2.5
7gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, comp... 42 2.5
8emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 ... 42 2.5
9gb|AC113355.2| Homo sapiens chromosome 5 clone CTD-3007L5, compl... 42 2.5
10dbj|BS000594.1| Pan troglodytes chromosome Y clone:PTB-031N07, c... 42 2.5
11gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 2.5
12gb|AC097516.2| Homo sapiens BAC clone RP11-468A23 from 4, comple... 42 2.5
13emb|BX932940.2| Gallus gallus finished cDNA, clone ChEST36n15 42 2.5
14gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, compl... 42 2.5
15ref|NM_201168.1| Danio rerio zgc:56184 (zgc:56184), mRNA 40 9.9
16ref|XM_425700.1| PREDICTED: Gallus gallus similar to RIM4 gamma ... 40 9.9
17gb|BC047839.1| Danio rerio zgc:56184, mRNA (cDNA clone MGC:56184... 40 9.9
18gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, co... 40 9.9
19emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 9.9
20gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8... 40 9.9
21gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cance... 40 9.9
22gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 9.9
23gb|AC092404.2| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 9.9
24gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete se... 40 9.9
25gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, comp... 40 9.9
26gb|AC083809.21| Homo sapiens 12 BAC RP11-785D18 (Roswell Park Ca... 40 9.9
27emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in... 40 9.9
28emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in ... 40 9.9
29dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.9
30gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromoso... 40 9.9 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 236/299 (78%), Gaps = 8/299 (2%)
 Strand = Plus / Minus

                                                                            
Query: 404      tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 463
                |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 21186700 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 21186641

                                                                            
Query: 464      ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagcac 523
                |||       |||| ||||| ||||| |||| ||||||||||| | ||||||||||||| 
Sbjct: 21186640 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagcat 21186588

                                                                            
Query: 524      aatgtaaatatgacaacggtagtgatgaagataagtggcaccaacccagaaaagtcgtag 583
                  ||||||||  || || |  |  |||||||  ||||| |||||||||||| |||  |||
Sbjct: 21186587 gctgtaaatagaacgacagcggaaatgaagaggagtggaaccaacccagaatagtaatag 21186528

                                                                            
Query: 584      tagtttagatatcaaactgatgggaccaagtactctgtccgattt-agtttttctgcaca 642
                  ||||||||||  ||||||||   |  ||||||||||| | ||| |    |||||||||
Sbjct: 21186527 ctgtttagatatggaactgatgaatctgagtactctgtctggtttgacgccttctgcaca 21186468

                                                                           
Query: 643      atgaaagcgcccaatgcccagtcaactggcataccccgaattttatttgtaacatcaat 701
                |||||||| ||||||||||||||||| |||| ||| | ||||| ||| | |||||||||
Sbjct: 21186467 atgaaagcacccaatgcccagtcaacaggcacaccgccaatttgattcgcaacatcaat 21186409
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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 236/299 (78%), Gaps = 8/299 (2%)
 Strand = Plus / Minus

                                                                         
Query: 404   tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 463
             |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 12977 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 12918

                                                                         
Query: 464   ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagcac 523
             |||       |||| ||||| ||||| |||| ||||||||||| | ||||||||||||| 
Sbjct: 12917 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagcat 12865

                                                                         
Query: 524   aatgtaaatatgacaacggtagtgatgaagataagtggcaccaacccagaaaagtcgtag 583
               ||||||||  || || |  |  |||||||  ||||| |||||||||||| |||  |||
Sbjct: 12864 gctgtaaatagaacgacagcggaaatgaagaggagtggaaccaacccagaatagtaatag 12805

                                                                         
Query: 584   tagtttagatatcaaactgatgggaccaagtactctgtccgattt-agtttttctgcaca 642
               ||||||||||  ||||||||   |  ||||||||||| | ||| |    |||||||||
Sbjct: 12804 ctgtttagatatggaactgatgaatctgagtactctgtctggtttgacgccttctgcaca 12745

                                                                        
Query: 643   atgaaagcgcccaatgcccagtcaactggcataccccgaattttatttgtaacatcaat 701
             |||||||| ||||||||||||||||| |||| ||| | ||||| ||| | |||||||||
Sbjct: 12744 atgaaagcacccaatgcccagtcaacaggcacaccgccaatttgattcgcaacatcaat 12686
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>ref|XM_482576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 634  ttctgcacaatgaaagcgcccaatgcccagtcaactggcataccccgaattttatttgta 693
            ||||||||||||||||| ||||||||||||||||| |||| ||| | ||||| ||| | |
Sbjct: 1565 ttctgcacaatgaaagcacccaatgcccagtcaacaggcacaccgccaatttgattcgca 1506

                                  
Query: 694  acatcaatgctattatgatcca 715
            |||||||| || |||| |||||
Sbjct: 1505 acatcaatcctcttatcatcca 1484



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 404  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 463
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 464  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 522
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586
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>dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J16, full
            insert sequence
          Length = 2052

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 634  ttctgcacaatgaaagcgcccaatgcccagtcaactggcataccccgaattttatttgta 693
            ||||||||||||||||| ||||||||||||||||| |||| ||| | ||||| ||| | |
Sbjct: 1565 ttctgcacaatgaaagcacccaatgcccagtcaacaggcacaccgccaatttgattcgca 1506

                                  
Query: 694  acatcaatgctattatgatcca 715
            |||||||| || |||| |||||
Sbjct: 1505 acatcaatcctcttatcatcca 1484



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 404  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 463
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 464  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 522
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586
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>gb|AY104515.1| Zea mays PCO140907 mRNA sequence
          Length = 706

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 635 tctgcacaatgaaagcgcccaatgcccagtcaactggca 673
           |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 191 tctgcacaatgaaagcacccaatgcccagtcaacaggca 153
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>ref|XM_421378.1| PREDICTED: Gallus gallus similar to TNF receptor associated factor 3
            (CD40 receptor associated factor 1) (CRAF1) (CD40 binding
            protein) (CD40BP) (LMP1 associated protein) (LAP1)
            (CAP-1) (LOC423471), mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 204  cagctcagcagtgcagcatgt 224
            |||||||||||||||||||||
Sbjct: 1056 cagctcagcagtgcagcatgt 1076
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>gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, complete sequence
          Length = 148521

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    ataattttgtacgcctgtctt 79
             |||||||||||||||||||||
Sbjct: 76233 ataattttgtacgcctgtctt 76253
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>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8,
             complete sequence
          Length = 112751

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 3     aaaattgatatacagacatgatata 27
             |||||||||||||| ||||||||||
Sbjct: 15284 aaaattgatatacacacatgatata 15308
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>gb|AC113355.2| Homo sapiens chromosome 5 clone CTD-3007L5, complete sequence
          Length = 130307

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 5     aattgatatacagacatgatataaa 29
             ||||| |||||||||||||||||||
Sbjct: 33723 aattggtatacagacatgatataaa 33699
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>dbj|BS000594.1| Pan troglodytes chromosome Y clone:PTB-031N07, complete sequences
          Length = 88699

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    ataattttgtacgcctgtctt 79
             |||||||||||||||||||||
Sbjct: 66362 ataattttgtacgcctgtctt 66342
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 59       ataattttgtacgcctgtctt 79
                |||||||||||||||||||||
Sbjct: 15627672 ataattttgtacgcctgtctt 15627692
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>gb|AC097516.2| Homo sapiens BAC clone RP11-468A23 from 4, complete sequence
          Length = 159064

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 683    ttttatttgtaacatcaatgctatt 707
              |||||||| ||||||||||||||||
Sbjct: 120081 ttttatttttaacatcaatgctatt 120057
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>emb|BX932940.2| Gallus gallus finished cDNA, clone ChEST36n15
          Length = 1397

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 cagctcagcagtgcagcatgt 224
           |||||||||||||||||||||
Sbjct: 557 cagctcagcagtgcagcatgt 577
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>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      aattgatatacagacatgatataaa 29
              ||||| |||||||||||||||||||
Sbjct: 151361 aattggtatacagacatgatataaa 151337
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>ref|NM_201168.1| Danio rerio zgc:56184 (zgc:56184), mRNA
          Length = 1705

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   atccttccgtgaaggataat 63
            ||||||||||||||||||||
Sbjct: 1479 atccttccgtgaaggataat 1498
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>ref|XM_425700.1| PREDICTED: Gallus gallus similar to RIM4 gamma (LOC428142), mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ttcagctcagcagtgcagca 221
            ||||||||||||||||||||
Sbjct: 1127 ttcagctcagcagtgcagca 1108
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>gb|BC047839.1| Danio rerio zgc:56184, mRNA (cDNA clone MGC:56184 IMAGE:5413461),
            complete cds
          Length = 1705

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   atccttccgtgaaggataat 63
            ||||||||||||||||||||
Sbjct: 1479 atccttccgtgaaggataat 1498
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>gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, complete sequence
          Length = 191242

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atacagacatgatataaaca 31
              ||||||||||||||||||||
Sbjct: 138311 atacagacatgatataaaca 138330
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>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   actgcagcagcccaagtcactgat 185
             |||||||||||||||||| |||||
Sbjct: 52829 actgcagcagcccaagtcgctgat 52806
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>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete
             sequence
          Length = 249943

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    acatgatataaacatgaaaa 37
             ||||||||||||||||||||
Sbjct: 69166 acatgatataaacatgaaaa 69185
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>gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127852

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aaacatgaaaaactgtcatc 46
             ||||||||||||||||||||
Sbjct: 63473 aaacatgaaaaactgtcatc 63492
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    actgcagcagcccaagtcactgat 185
              |||||||||||||||| |||||||
Sbjct: 706148 actgcagcagcccaagccactgat 706125
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>gb|AC092404.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-261D18, complete
              sequence
          Length = 225503

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    agagtattgagcaactatgc 153
              ||||||||||||||||||||
Sbjct: 214493 agagtattgagcaactatgc 214474
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>gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete sequence
          Length = 206755

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    actgcagcagcccaagtcactgat 185
              |||||||||||||||| |||||||
Sbjct: 169332 actgcagcagcccaagccactgat 169309
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>gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, complete sequence
          Length = 159512

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gcccaagtcactgattttac 190
             ||||||||||||||||||||
Sbjct: 70600 gcccaagtcactgattttac 70581
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>gb|AC083809.21| Homo sapiens 12 BAC RP11-785D18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 136607

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   ggccaggaatatctacatat 372
             ||||||||||||||||||||
Sbjct: 54575 ggccaggaatatctacatat 54594
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>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
              complete sequence
          Length = 189327

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aaacatgaaaaactgtcatc 46
              ||||||||||||||||||||
Sbjct: 176540 aaacatgaaaaactgtcatc 176521
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>emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in linkage group 22,
              complete sequence
          Length = 214843

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aaacatgaaaaactgtcatc 46
              ||||||||||||||||||||
Sbjct: 174861 aaacatgaaaaactgtcatc 174880
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>dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-819M15, complete
             sequence
          Length = 165258

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   gcacaatgtaaatatgacaa 539
             ||||||||||||||||||||
Sbjct: 52229 gcacaatgtaaatatgacaa 52248
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>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete
              sequence
          Length = 209915

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    cggtcttgttcagctcagca 213
              ||||||||||||||||||||
Sbjct: 207889 cggtcttgttcagctcagca 207908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,918,011
Number of Sequences: 3902068
Number of extensions: 5918011
Number of successful extensions: 105249
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105111
Number of HSP's gapped (non-prelim): 138
length of query: 720
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 697
effective length of database: 17,143,297,704
effective search space: 11948878499688
effective search space used: 11948878499688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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