ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal18o17 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 218 bits (554), Expect = 1e-56 Identities = 104/104 (100%), Positives = 104/104 (100%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK Sbjct: 291 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 350 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 277 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER Sbjct: 351 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 394
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 201 bits (512), Expect = 1e-51 Identities = 95/104 (91%), Positives = 100/104 (96%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 TI+WIPCGRKLTCSYPGIKF+Y PD+YF EVSVLEMDGQFDRLDELIYVESHLSNLSTK Sbjct: 283 TISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTK 342 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 277 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+IA + Sbjct: 343 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANK 386
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 201 bits (511), Expect = 1e-51 Identities = 94/104 (90%), Positives = 99/104 (95%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 +I WIPCGRKLTCSYPGIKF YGPDTYFG EV+VLEMDGQFDRLDELIYVESHLSNLSTK Sbjct: 284 SITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTK 343 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 277 FYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+IA + Sbjct: 344 FYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASK 387
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 196 bits (499), Expect = 3e-50 Identities = 89/104 (85%), Positives = 99/104 (95%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 TI+WIPCGRKLTCSYPGIKFSYGPDT++G EV+V+EMDG FDRLDELIYVESHLSNLSTK Sbjct: 289 TISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTK 348 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 277 FYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++A R Sbjct: 349 FYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASR 392
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 182 bits (463), Expect = 5e-46 Identities = 82/101 (81%), Positives = 96/101 (95%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 TI+WIPCGRKLTCS+PGIK YGPDT++GQEVSVLEMDGQFD+L+ELIYVESHLSN S K Sbjct: 268 TISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAK 327 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 286 FYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+ Sbjct: 328 FYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV 368
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 156 bits (395), Expect = 4e-38 Identities = 66/103 (64%), Positives = 88/103 (85%) Frame = -3 Query: 588 TINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTK 409 TI+W PCGRKLTC+YPGIK YGPD + G EVS+LE+DG+F+ L+E++YVE+HLS TK Sbjct: 223 TIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTK 282 Query: 408 FYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 280 +YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ+ AE Sbjct: 283 YYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQLTAE 325
>ASSY_HALMA (Q5UZ46) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 420 Score = 33.9 bits (76), Expect = 0.36 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Frame = -3 Query: 537 IKFSYGPDTYFGQEVSVLEMDGQFDRLDEL---IYVESHLSNLSTKFYGEVTQQMLKHAD 367 +K YG D G V V + D +F+ +E + VE H+ + + +F + + +AD Sbjct: 25 LKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEALGVEQHVVDATEEFADLCMEAVKANAD 84 Query: 366 FPGSNNGTGLFQTIVGLKIRDLYE 295 + G GT L + ++ I + E Sbjct: 85 YQGYPLGTALARPVIAKAILSVAE 108
>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) (Fragments) Length = 35 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -3 Query: 546 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 460 Y +KF YG T +VSVLEMDGQFDR Sbjct: 8 YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 1.1 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 74 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 253 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 254 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 364 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>EXOS2_HUMAN (Q13868) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -3 Query: 531 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 394 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYIGEV 80
>EXOS2_MOUSE (Q8VBV3) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -3 Query: 531 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 394 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYNGEV 80
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 265 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 372 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 265 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 372 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 265 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 372 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 265 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 372 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +1 Query: 265 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 372 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>MA2C1_HUMAN (Q9NTJ4) Alpha-mannosidase 2C1 (EC 3.2.1.24) (Alpha-D-mannoside| mannohydrolase) (Mannosidase alpha class 2C member 1) (Alpha mannosidase 6A8B) Length = 1040 Score = 29.3 bits (64), Expect = 8.9 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +2 Query: 209 DEMIHELEFGAHQTFAASAGTPALSAMICS*RSLIFSPTIVWKRPVPLLLPGKSACFSIC 388 + M H + +H SA AL A L+ T+ WKR + LP S+ Sbjct: 591 EAMCHYEDIRSHGNTLLSAAAAALCAGEPGPEGLLIVNTLPWKRIEVMALPKPGGAHSLA 650 Query: 389 CVTSP 403 VT P Sbjct: 651 LVTVP 655 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,303,821 Number of Sequences: 219361 Number of extensions: 1660020 Number of successful extensions: 4479 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4478 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
