>Y4844_ARATH (O49453) Protein At4g28440|
          Length = 153

 Score =  116 bits (290), Expect = 6e-26
 Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 5/117 (4%)
 Frame = -2

Query: 618 GHNLQLRVLSSKPVV-----LHRQHQGGRAGNNMRIAECIVGDDTGVVVFTARNEQVDIM 454
           GH L ++V+ +  VV             R     RI EC++GD+TG ++FTARN+QVD+M
Sbjct: 34  GHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLM 93

Query: 453 KPGAVVEARKARVDMYKGSMRLAVDKWGTLKAAESPADFKVKEDNNVSLIEFELMTV 283
           KPGA V  R +R+DM+KG+MRL VDKWG ++A    A F VKEDNN+SL+E+EL+ V
Sbjct: 94  KPGATVILRNSRIDMFKGTMRLGVDKWGRIEAT-GAASFTVKEDNNLSLVEYELINV 149

>MUTS_GEOSL (P61667) DNA mismatch repair protein mutS|
          Length = 871

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = -2

Query: 531 RIAECIVGDDTGVVVFTARNEQVDIMKPGAVVEARKA--RVDMYKGSMRLAVDKWGTLKA 358
           ++A C   +D   V    + E V ++ PG V++A     + + Y  S+    D+WG    
Sbjct: 84  KVAICEQVEDPKSVKGIVKREVVKVVTPGLVIDAESLSPKENNYLLSLFPGPDRWGVAYL 143

Query: 357 AESPADFKVKEDNNVSLIEFELMTV 283
             S  DF+V E ++      E+  V
Sbjct: 144 DLSTGDFRVTETDSADAAWAEVACV 168

>RBL1P_RALEU (P42721) Ribulose bisphosphate carboxylase large chain, plasmid (EC|
           4.1.1.39) (RuBisCO large subunit)
          Length = 486

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = -2

Query: 618 GHNLQLRVLSSKPVVLHRQHQGGRAGNNMRIAECIVGDDTGV-VVFTARNEQVDIMKPGA 442
           G   QL  L    VVL  Q  GG  G+   I      +   +  +  ARNE  DI+  G 
Sbjct: 387 GQMHQLIHLFGDDVVL--QFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGP 444

Query: 441 VVEARKARVDMYKGSMRLAVDKWGTLKAAESPAD 340
            +    AR   + G +R A+D WG +    +P D
Sbjct: 445 EILRDAAR---WCGPLRAALDTWGDISFNYTPTD 475

>LPXH_CHRVO (Q7NT75) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)|
          Length = 237

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 340 VRRALGGLERPPLVHGQAHRPLVHVHPRLPR--LHDGPGLHDIHLLVACCEYDDPGV 504
           VR  L     P L+HG  HRP  H+H    R  + D  G    +LL+     DD G+
Sbjct: 179 VRELLAAHGWPTLIHGHTHRPAHHLHDASSRWVIQDWHGGRGGYLLL-----DDGGI 230

>MUTS_PROMA (Q7V9M5) DNA mismatch repair protein mutS|
          Length = 914

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = -2

Query: 459 IMKPGAVVEARKARVDMYKGSMRLAVD--------KWGTLKAAESPADFKVKEDNNVSLI 304
           I+ PG V+E    +         + ++        KWG   A  S  +F VKE N +  +
Sbjct: 194 ILTPGTVLEEGMLQAKKNNWLAAILIESNSQTNQLKWGLASADISTGEFTVKEGNGIDTL 253

Query: 303 EFELMTV 283
           E +L+ +
Sbjct: 254 EQDLLNI 260

>POLN_SMSV1 (P36286) Non-structural polyprotein [Contains: Unknown protein;|
           Helicase (2C-like protein) (P2C); 3A-like protein; Viral
           genome-linked protein (VPg); Thiol protease P3C (EC
           3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA
           polymerase (EC
          Length = 1879

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 478 CCEYDDPGVVADDALCDAHVVAGPSAL-VLPVEDDGLGAEDPE 603
           CCE  D GVV     C+        A+   P + DGL  ++PE
Sbjct: 102 CCEAKDGGVVRSCKTCNLKPAHDSKAVSFFPAQTDGLTGDEPE 144

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = +1

Query: 373 PLVHGQA---HRPLVHVHPRLPRLHDGPGLHDIHLLVACCEYDDPGVVADDALCDAHVVA 543
           P VH QA   H P   +HP+ P +H  P    +H          PGV   +     H   
Sbjct: 395 PAVHPQAPGVHPPAPGIHPQAPGVHPQPP-PGVHPAAPGVHPQPPGVHPSNP--GVHPAP 451

Query: 544 GPSALVLPVEDDGLGAEDP 600
            P  L  P+  DG G   P
Sbjct: 452 MPPMLRPPLPSDGPGNMPP 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,598,913
Number of Sequences: 219361
Number of extensions: 922504
Number of successful extensions: 2618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2617
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)