>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 404

 Score =  258 bits (658), Expect = 1e-68
 Identities = 123/124 (99%), Positives = 124/124 (100%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           LIMKEG+KFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ
Sbjct: 271 LIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 330

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI
Sbjct: 331 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 390

Query: 281 IAER 270
           IAER
Sbjct: 391 IAER 394

>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 395

 Score =  239 bits (609), Expect = 7e-63
 Identities = 113/124 (91%), Positives = 120/124 (96%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           LIMKEGVK+F+PVYLFDEGSTI+WIPCGRKLTCSYPGIKF+Y PD+YF  EVSVLEMDGQ
Sbjct: 263 LIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQ 322

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+
Sbjct: 323 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQL 382

Query: 281 IAER 270
           IA +
Sbjct: 383 IANK 386

>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 397

 Score =  235 bits (599), Expect = 9e-62
 Identities = 110/124 (88%), Positives = 118/124 (95%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           LI KEGV++F+PVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPDTYFG EV+VLEMDGQ
Sbjct: 264 LIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQ 323

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+
Sbjct: 324 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQL 383

Query: 281 IAER 270
           IA +
Sbjct: 384 IASK 387

>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 402

 Score =  234 bits (597), Expect = 2e-61
 Identities = 107/124 (86%), Positives = 118/124 (95%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           +I KEGVKFFNPVYLFDEGSTI+WIPCGRKLTCSYPGIKFSYGPDT++G EV+V+EMDG 
Sbjct: 269 MIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGM 328

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ+
Sbjct: 329 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQL 388

Query: 281 IAER 270
           +A R
Sbjct: 389 VASR 392

>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 375

 Score =  216 bits (551), Expect = 3e-56
 Identities = 99/121 (81%), Positives = 114/121 (94%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           LIMKEG K F+PVYLFDEGSTI+WIPCGRKLTCS+PGIK  YGPDT++GQEVSVLEMDGQ
Sbjct: 248 LIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQ 307

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           FD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I
Sbjct: 308 FDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERI 367

Query: 281 I 279
           +
Sbjct: 368 V 368

>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)|
           (PRKase) (PRK)
          Length = 332

 Score =  191 bits (484), Expect = 2e-48
 Identities = 82/123 (66%), Positives = 105/123 (85%)
 Frame = -2

Query: 641 LIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQ 462
           L+ KEGVKFF P YLFDEGSTI+W PCGRKLTC+YPGIK  YGPD + G EVS+LE+DG+
Sbjct: 203 LVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGR 262

Query: 461 FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 282
           F+ L+E++YVE+HLS   TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ+
Sbjct: 263 FENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQL 322

Query: 281 IAE 273
            AE
Sbjct: 323 TAE 325

>ASSY_HALMA (Q5UZ46) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 420

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -2

Query: 530 IKFSYGPDTYFGQEVSVLEMDGQFDRLDEL---IYVESHLSNLSTKFYGEVTQQMLKHAD 360
           +K  YG D   G  V V + D +F+  +E    + VE H+ + + +F     + +  +AD
Sbjct: 25  LKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEALGVEQHVVDATEEFADLCMEAVKANAD 84

Query: 359 FPGSNNGTGLFQTIVGLKIRDLYE 288
           + G   GT L + ++   I  + E
Sbjct: 85  YQGYPLGTALARPVIAKAILSVAE 108

>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)|
           (PRKase) (PRK) (Fragments)
          Length = 35

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = -2

Query: 539 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 453
           Y  +KF YG  T    +VSVLEMDGQFDR
Sbjct: 8   YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35

>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1052

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 67   HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAYQTF 246
            +G     V+ AG H   + +S  F     +T HK +E  HS  +  E+  +  F     F
Sbjct: 769  YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNV--QF 824

Query: 247  AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 357
                GTP +  M + + RS+ FS  +V K  + L L G
Sbjct: 825  VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862

>EXOS2_HUMAN (Q13868) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 4) (Exosome component 2)
          Length = 293

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 524 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 387
           F  G  TY G+E  +  + G  +R+++LI V++    L T++ GEV
Sbjct: 39  FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYIGEV 80

>EXOS2_MOUSE (Q8VBV3) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 4) (Exosome component 2)
          Length = 293

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 524 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 387
           F  G  TY G+E  +  + G  +R+++LI V++    L T++ GEV
Sbjct: 39  FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYNGEV 80

>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like|
           protein FB
          Length = 1019

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 365
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640

>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC|
           4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit)
          Length = 1019

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 365
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640

>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC|
           4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit)
          Length = 1019

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 365
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640

>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like|
           protein ST-
          Length = 1019

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 365
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640

>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like|
           protein 1224-5/1F
          Length = 1019

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 258 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 365
           RN  P+S ++ +  + + S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,061,421
Number of Sequences: 219361
Number of extensions: 1883887
Number of successful extensions: 4886
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4885
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)