ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7d11 |
|---|---|
| Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 192 bits (488), Expect = 4e-49 Identities = 95/104 (91%), Positives = 99/104 (95%), Gaps = 2/104 (1%) Frame = -3 Query: 500 AVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSV 321 AVTIFGGRGHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSV Sbjct: 292 AVTIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSV 351 Query: 320 FHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 195 FHCF ENVESGHPLVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 352 FHCF--ENVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 135 bits (339), Expect = 8e-32 Identities = 66/96 (68%), Positives = 77/96 (80%) Frame = -3 Query: 500 AVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSV 321 AVTIFGG GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV Sbjct: 299 AVTIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSV 358 Query: 320 FHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE 213 HCFE EN+ + P VKEGKL NLL W ED+LEE Sbjct: 359 LHCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 134 bits (338), Expect = 1e-31 Identities = 67/99 (67%), Positives = 77/99 (77%), Gaps = 1/99 (1%) Frame = -3 Query: 500 AVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSV 321 AVTIFGGRGHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+ A SP+SV Sbjct: 299 AVTIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSV 356 Query: 320 FHCFEGENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 207 FHCF+GENVES P+ K+ KLANLL W E D++EE A Sbjct: 357 FHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 35.8 bits (81), Expect = 0.066 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = -3 Query: 458 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 291 G LD + Y C+ Q L G ++YQ F A GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 33.9 bits (76), Expect = 0.25 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -3 Query: 452 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 297 KLD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 33.5 bits (75), Expect = 0.33 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -3 Query: 458 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 291 G LD + Y C Q L G ++YQ F GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.7 bits (73), Expect = 0.56 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -3 Query: 452 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 297 +LD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>RPIA_BORPE (Q7VWC1) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 30.0 bits (66), Expect = 3.6 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Frame = +3 Query: 300 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 446 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 447 ELLAPGGGVAAATEDGDR 500 LA AT+DG R Sbjct: 203 FALAGADVALLATQDGIR 220
>RPIA_BORPA (Q7W9Q5) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 30.0 bits (66), Expect = 3.6 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Frame = +3 Query: 300 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 446 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 447 ELLAPGGGVAAATEDGDR 500 LA AT+DG R Sbjct: 203 FALAGADVALLATQDGIR 220
>RPIA_BORBR (Q7WH03) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 30.0 bits (66), Expect = 3.6 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Frame = +3 Query: 300 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 446 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 447 ELLAPGGGVAAATEDGDR 500 LA AT+DG R Sbjct: 203 FALAGADVALLATQDGIR 220
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 344 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 204 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 28.9 bits (63), Expect = 8.1 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Frame = +3 Query: 192 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 356 S A H A PP G+ F D+R L A +AV G P P G +L Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360 Query: 357 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPGG 467 + A+ + PAG L H V LL P G Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRG 393
>PKN1_CHLCV (Q822R1) Serine/threonine-protein kinase pkn1 (EC 2.7.11.1)| Length = 618 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = -3 Query: 497 VTIFGGRGHAATWGKKLDAEA----YDCNNIVEQELPCG 393 VT +G G+A+ GK+L EA C + + PCG Sbjct: 473 VTWYGASGYASWVGKRLPTEAEWEIASCGGVTQLRYPCG 511
>DPYS_HUMAN (Q14117) Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)| (DHP) Length = 519 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 348 SNLFIRGKALVDED-APAGELLLHDVVAVVCLGVELLAPGGGVA 476 S L IRG +V++D + ++L+ D V V LG +LL PGG A Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGV-VRALGHDLLPPGGAPA 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,924,522 Number of Sequences: 219361 Number of extensions: 1171277 Number of successful extensions: 3620 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3616 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
