ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19b18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190943.1| Oryza sativa (japonica cultivar-group), predic... 454 e-124
2dbj|AK067589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
3gb|AY111335.1| Zea mays CL12369_1 mRNA sequence 186 7e-44
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
5dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
6emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl ... 86 2e-13
7gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophospha... 86 2e-13
8gb|AF288615.1|AF288615 Arabidopsis thaliana 4-diphosphocytidyl-2... 64 7e-07
9emb|BX821564.1|CNS0A98L Arabidopsis thaliana Full-length cDNA Co... 64 7e-07
10ref|NM_128250.2| Arabidopsis thaliana ATCDPMEK; ATP binding / ki... 62 3e-06
11dbj|AB037877.1| Arabidopsis thaliana ATCDPMEK mRNA for 4-(cytidi... 62 3e-06
12gb|BT000208.1| Arabidopsis thaliana putative ripening-associated... 56 2e-04
13gb|AY136394.1| Arabidopsis thaliana putative ripening-associated... 56 2e-04
14gb|DQ269453.1| Stevia rebaudiana 4-diphosphocytidyl-2-C-methyl-D... 56 2e-04
15gb|U62773.1|SLU62773 Lycopersicon esculentum ripening-associated... 54 7e-04
16gb|AF263101.1|AF263101 Lycopersicon esculentum 4-diphosphocytidy... 54 7e-04
17gb|AF258339.1|AF258339 Expression vector pNCO-HIS6-TM-YCHB 4-dip... 54 7e-04
18gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, comp... 42 2.6
19gb|AC113033.13| Mus musculus chromosome 7, clone RP23-220I5, com... 42 2.6
20gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome... 42 2.6
21gb|AC130203.4| Mus musculus BAC clone RP24-413E20 from chromosom... 42 2.6
22emb|Z54073.2|HSN13E1 Human DNA sequence from clone LL22NC03-13E1... 42 2.6
23gb|AC165051.2| Phakopsora pachyrhizi clone JGIAFNA-1077C21, comp... 42 2.6
24gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 42 2.6 
>ref|NM_190943.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1206

 Score =  454 bits (229), Expect = e-124
 Identities = 464/541 (85%), Gaps = 1/541 (0%)
 Strand = Plus / Minus

                                                                        
Query: 205  tcgatgacattggttccctgtaccattcattctcctcgcgagtgagaaagcgagcctctg 264
            ||||||| |||||||| |||||||| || ||||| |  |||||||| ||||  |||||||
Sbjct: 1153 tcgatgagattggttctctgtaccactcgttctcattacgagtgaggaagcaggcctctg 1094

                                                                        
Query: 265  acacaaaaacgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaac 324
            ||||||||   ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||
Sbjct: 1093 acacaaaagtatccttgtagtcatcatcatcatacacaaatgcaggcggatctggtgaac 1034

                                                                        
Query: 325  caattccgacaatcgtgcttccacttcctgacataaaaacagcactgtaatctcccctat 384
            |||| || ||||| ||||||||||||||||||||||||||||||   ||||||||||  |
Sbjct: 1033 caatcccaacaattgtgcttccacttcctgacataaaaacagcatcataatctccccggt 974

                                                                        
Query: 385  tggatgcaataaatcgtttcttcaacttctttagtgactgcaacacctcaaaagctggag 444
            | |  ||||| |  |||||||||||| ||||||||||  ||||||||||||| |||||||
Sbjct: 973  tagcagcaattatacgtttcttcaacctctttagtgatggcaacacctcaaatgctggag 914

                                                                        
Query: 445  gctctagatcatttacacagacatcttgtgatatcccattttgcgtaatttccttgagca 504
            | ||||||||||| |||||| |||| ||||||||||||||||  ||||||||||||||||
Sbjct: 913  gttctagatcattaacacaggcatcctgtgatatcccattttcagtaatttccttgagca 854

                                                                        
Query: 505  aagccaaaggatcagcttgactagtctgatctaacccggagtcgcttgtaaacttcagcg 564
            |  |||| ||||||| |||||| || || ||||| || ||| ||||||||||||||||| 
Sbjct: 853  ataccaagggatcagtttgacttgtgtgctctaa-cctgagccgcttgtaaacttcagct 795

                                                                        
Query: 565  gttgagcatgcttcaggtggctttattagaaccattggcagattctctggcaacaggttt 624
            ||||||||||||||||||||||||| ||| ||||| |||| |||  |||||||  | || 
Sbjct: 794  gttgagcatgcttcaggtggctttactagtaccatcggcaaatttgctggcaatggattc 735

                                                                        
Query: 625  ggaatatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaag 684
             |||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 734  cgaatatcttcaacaatctctcctctaccggtacaatacgctgctccttgtgaaaagaag 675

                                                                        
Query: 685  aaggggatatctgatccaatctcaccagaccattcttgaagatctttttctgaagcaatg 744
            ||||| ||||| ||||| ||||| |||||||| || ||||| || |||||||||||||||
Sbjct: 674  aagggaatatccgatcctatctctccagaccactcctgaagctccttttctgaagcaatg 615

             
Query: 745  c 745
            |
Sbjct: 614  c 614
to top
>dbj|AK067589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G19, full
            insert sequence
          Length = 1612

 Score =  454 bits (229), Expect = e-124
 Identities = 464/541 (85%), Gaps = 1/541 (0%)
 Strand = Plus / Minus

                                                                        
Query: 205  tcgatgacattggttccctgtaccattcattctcctcgcgagtgagaaagcgagcctctg 264
            ||||||| |||||||| |||||||| || ||||| |  |||||||| ||||  |||||||
Sbjct: 1240 tcgatgagattggttctctgtaccactcgttctcattacgagtgaggaagcaggcctctg 1181

                                                                        
Query: 265  acacaaaaacgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaac 324
            ||||||||   ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||
Sbjct: 1180 acacaaaagtatccttgtagtcatcatcatcatacacaaatgcaggcggatctggtgaac 1121

                                                                        
Query: 325  caattccgacaatcgtgcttccacttcctgacataaaaacagcactgtaatctcccctat 384
            |||| || ||||| ||||||||||||||||||||||||||||||   ||||||||||  |
Sbjct: 1120 caatcccaacaattgtgcttccacttcctgacataaaaacagcatcataatctccccggt 1061

                                                                        
Query: 385  tggatgcaataaatcgtttcttcaacttctttagtgactgcaacacctcaaaagctggag 444
            | |  ||||| |  |||||||||||| ||||||||||  ||||||||||||| |||||||
Sbjct: 1060 tagcagcaattatacgtttcttcaacctctttagtgatggcaacacctcaaatgctggag 1001

                                                                        
Query: 445  gctctagatcatttacacagacatcttgtgatatcccattttgcgtaatttccttgagca 504
            | ||||||||||| |||||| |||| ||||||||||||||||  ||||||||||||||||
Sbjct: 1000 gttctagatcattaacacaggcatcctgtgatatcccattttcagtaatttccttgagca 941

                                                                        
Query: 505  aagccaaaggatcagcttgactagtctgatctaacccggagtcgcttgtaaacttcagcg 564
            |  |||| ||||||| |||||| || || ||||| || ||| ||||||||||||||||| 
Sbjct: 940  ataccaagggatcagtttgacttgtgtgctctaa-cctgagccgcttgtaaacttcagct 882

                                                                        
Query: 565  gttgagcatgcttcaggtggctttattagaaccattggcagattctctggcaacaggttt 624
            ||||||||||||||||||||||||| ||| ||||| |||| |||  |||||||  | || 
Sbjct: 881  gttgagcatgcttcaggtggctttactagtaccatcggcaaatttgctggcaatggattc 822

                                                                        
Query: 625  ggaatatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaag 684
             |||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 821  cgaatatcttcaacaatctctcctctaccggtacaatacgctgctccttgtgaaaagaag 762

                                                                        
Query: 685  aaggggatatctgatccaatctcaccagaccattcttgaagatctttttctgaagcaatg 744
            ||||| ||||| ||||| ||||| |||||||| || ||||| || |||||||||||||||
Sbjct: 761  aagggaatatccgatcctatctctccagaccactcctgaagctccttttctgaagcaatg 702

             
Query: 745  c 745
            |
Sbjct: 701  c 701
to top
>gb|AY111335.1| Zea mays CL12369_1 mRNA sequence
          Length = 614

 Score =  186 bits (94), Expect = 7e-44
 Identities = 194/229 (84%)
 Strand = Plus / Plus

                                                                       
Query: 276 tccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccgaca 335
           |||||||||||||||||||||||||| || ||||| || || || |||||||| || |||
Sbjct: 368 tccttgtagtcttcatcgtcatacacgaatgcaggaggatccggtgaaccaataccaaca 427

                                                                       
Query: 336 atcgtgcttccacttcctgacataaaaacagcactgtaatctcccctattggatgcaata 395
           || ||||||||||||||||||||     ||||||| |||||  |||     | |||||||
Sbjct: 428 attgtgcttccacttcctgacatnnnnncagcactataatcatcccggccagctgcaata 487

                                                                       
Query: 396 aatcgtttcttcaacttctttagtgactgcaacacctcaaaagctggaggctctagatca 455
           | ||||||||||||| |||| |||||  |||||||||||||||||||||||||||| |||
Sbjct: 488 attcgtttcttcaacctcttaagtgagggcaacacctcaaaagctggaggctctaggtca 547

                                                            
Query: 456 tttacacagacatcttgtgatatcccattttgcgtaatttccttgagca 504
           || ||||| |||||||||||||||||||| || || ||||||| |||||
Sbjct: 548 ttaacacaaacatcttgtgatatcccattctgagttatttcctcgagca 596
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 6e-26
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                            
Query: 642      ctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaaggggatatctgatcc 701
                ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||
Sbjct: 33967265 ctctcctctaccggtacaatacgctgctccttgtgaaaagaagaagggaatatccgatcc 33967206

                                                            
Query: 702      aatctcaccagaccattcttgaagatctttttctgaagcaatgc 745
                 ||||| |||||||| || ||||| || ||||||||||||||||
Sbjct: 33967205 tatctctccagaccactcctgaagctccttttctgaagcaatgc 33967162



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                            
Query: 448      ctagatcatttacacagacatcttgtgatatcccattttgcgtaatttccttgagcaaag 507
                |||||||||| |||||| |||| ||||||||||||||||  |||||||||||||||||  
Sbjct: 33968169 ctagatcattaacacaggcatcctgtgatatcccattttcagtaatttccttgagcaata 33968110

                                                 
Query: 508      ccaaaggatcagcttgactagtctgatctaacc 540
                |||| ||||||| |||||| || || |||||||
Sbjct: 33968109 ccaagggatcagtttgacttgtgtgctctaacc 33968077



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 549      cttgtaaacttcagcggttgagcatgcttcaggtggctttattagaaccattggcagatt 608
                ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct: 33968007 cttgtaaacttcagctgttgagcatgcttcaggtggctttactagtaccatcggcaaatt 33967948

                         
Query: 609      ctctggcaa 617
                  |||||||
Sbjct: 33967947 tgctggcaa 33967939



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                            
Query: 262      ctgacacaaaaacgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctgggg 321
                |||||||||||   ||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 33968954 ctgacacaaaagtatccttgtagtcatcatcatcatacacaaatgcaggcggatctggtg 33968895

                                            
Query: 322      aaccaattccgacaatcgtgcttccact 349
                ||||||| || ||||| |||||||||||
Sbjct: 33968894 aaccaatcccaacaattgtgcttccact 33968867



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                            
Query: 348      cttcctgacataaaaacagcactgtaatctcccctattggatgcaataaatcgtttcttc 407
                |||||||||||||||||||||   ||||||||||  || |  ||||| |  |||||||||
Sbjct: 33968421 cttcctgacataaaaacagcatcataatctccccggttagcagcaattatacgtttcttc 33968362

                                                      
Query: 408      aacttctttagtgactgcaacacctcaaaagctggagg 445
                ||| ||||||||||  ||||||||||||| ||||||||
Sbjct: 33968361 aacctctttagtgatggcaacacctcaaatgctggagg 33968324
to top
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003D09
          Length = 161970

 Score =  127 bits (64), Expect = 6e-26
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                         
Query: 642   ctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaaggggatatctgatcc 701
             ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||
Sbjct: 98708 ctctcctctaccggtacaatacgctgctccttgtgaaaagaagaagggaatatccgatcc 98649

                                                         
Query: 702   aatctcaccagaccattcttgaagatctttttctgaagcaatgc 745
              ||||| |||||||| || ||||| || ||||||||||||||||
Sbjct: 98648 tatctctccagaccactcctgaagctccttttctgaagcaatgc 98605



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                         
Query: 448   ctagatcatttacacagacatcttgtgatatcccattttgcgtaatttccttgagcaaag 507
             |||||||||| |||||| |||| ||||||||||||||||  |||||||||||||||||  
Sbjct: 99612 ctagatcattaacacaggcatcctgtgatatcccattttcagtaatttccttgagcaata 99553

                                              
Query: 508   ccaaaggatcagcttgactagtctgatctaacc 540
             |||| ||||||| |||||| || || |||||||
Sbjct: 99552 ccaagggatcagtttgacttgtgtgctctaacc 99520



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 549   cttgtaaacttcagcggttgagcatgcttcaggtggctttattagaaccattggcagatt 608
             ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct: 99450 cttgtaaacttcagctgttgagcatgcttcaggtggctttactagtaccatcggcaaatt 99391

                      
Query: 609   ctctggcaa 617
               |||||||
Sbjct: 99390 tgctggcaa 99382



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                          
Query: 262    ctgacacaaaaacgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctgggg 321
              |||||||||||   ||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 100397 ctgacacaaaagtatccttgtagtcatcatcatcatacacaaatgcaggcggatctggtg 100338

                                          
Query: 322    aaccaattccgacaatcgtgcttccact 349
              ||||||| || ||||| |||||||||||
Sbjct: 100337 aaccaatcccaacaattgtgcttccact 100310



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                         
Query: 348   cttcctgacataaaaacagcactgtaatctcccctattggatgcaataaatcgtttcttc 407
             |||||||||||||||||||||   ||||||||||  || |  ||||| |  |||||||||
Sbjct: 99864 cttcctgacataaaaacagcatcataatctccccggttagcagcaattatacgtttcttc 99805

                                                   
Query: 408   aacttctttagtgactgcaacacctcaaaagctggagg 445
             ||| ||||||||||  ||||||||||||| ||||||||
Sbjct: 99804 aacctctttagtgatggcaacacctcaaatgctggagg 99767
to top
>emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl monophosphate kinase (ipk
           gene)
          Length = 1481

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                       
Query: 624 tggaatatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaa 683
           |||||| ||||  |||| |||||||||||| ||||||||||| |||||  | || || ||
Sbjct: 767 tggaatgtcttctacaacctctcctctacccgtacaatatgcagctccatgagagaaaaa 708

                                                              
Query: 684 gaaggggatatctgatccaatctcaccagaccattcttgaagatctttttc 734
           ||| |||||||| || ||||| || |||||||||||||||||||| |||||
Sbjct: 707 gaacgggatatcagagccaatttctccagaccattcttgaagatccttttc 657
to top
>gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophosphate kinase (IPK) mRNA,
           complete cds
          Length = 1481

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                       
Query: 624 tggaatatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaa 683
           |||||| ||||  |||| |||||||||||| ||||||||||| |||||  | || || ||
Sbjct: 767 tggaatgtcttctacaacctctcctctacccgtacaatatgcagctccatgagagaaaaa 708

                                                              
Query: 684 gaaggggatatctgatccaatctcaccagaccattcttgaagatctttttc 734
           ||| |||||||| || ||||| || |||||||||||||||||||| |||||
Sbjct: 707 gaacgggatatcagagccaatttctccagaccattcttgaagatccttttc 657
to top
>gb|AF288615.1|AF288615 Arabidopsis thaliana 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
            (ISPE) mRNA, complete cds; chloroplast gene for
            chloroplast product
          Length = 1152

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            ||||||||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 1040 acgtccttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 981

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 980  ataatagtgcttccactcccagacataaacacagca 945



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| ||||||||||| || |||||  | || |||||||| || 
Sbjct: 683 tcttggacaatctcacctctcccggtacaataggcagctccatgcgagaagaagaaagga 624

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 623 atatctgacccaatttcac 605
to top
>emb|BX821564.1|CNS0A98L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL54ZA07 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1237

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            |||| |||||| |||||||| ||||| | |||  |||| || ||||| |||||||| |||
Sbjct: 1045 acgttcttgtattcttcatcatcatatataaatccaggaggatctggtgaaccaataccg 986

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 985  ataatagtgcttccactcccagacataaacacagca 950



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| ||||||||||| || |||||  | || |||||||| || 
Sbjct: 688 tcttggacaatctcacctctcccggtacaataggcagctccatgcgagaagaagaaagga 629

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 628 atatctgacccaatttcac 610
to top
>ref|NM_128250.2| Arabidopsis thaliana ATCDPMEK; ATP binding / kinase AT2G26930
           (ATCDPMEK) mRNA, complete cds
          Length = 1777

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| ||||||||||| || |||||  | || |||||||| || 
Sbjct: 700 tcttggacaatctcacctctcccggtacaataggcagctccatgcgagaagaagaaagga 641

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 640 atatctgacccaatttcac 622



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            |||| |||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 1057 acgttcttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 998

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 997  ataatagtgcttccactcccagacataaacacagca 962
to top
>dbj|AB037877.1| Arabidopsis thaliana ATCDPMEK mRNA for 4-(cytidine
           5'-phospho)-2-C-methyl-D-erithritol kinase, complete cds
          Length = 1288

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| ||||||||||| || |||||  | || |||||||| || 
Sbjct: 688 tcttggacaatctcacctctcccggtacaataggcagctccatgcgagaagaagaaagga 629

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 628 atatctgacccaatttcac 610



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            |||| |||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 1045 acgttcttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 986

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 985  ataatagtgcttccactcccagacataaacacagca 950
to top
>gb|BT000208.1| Arabidopsis thaliana putative ripening-associated protein (At2g26930)
            mRNA, complete cds
          Length = 1222

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            |||| |||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 1040 acgttcttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 981

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 980  ataatagtgcttccactcccagacataaacacagca 945



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| || |||||||| || |||||  | || |||||||| || 
Sbjct: 683 tcttggacaatctcacctctcccagtacaataggcagctccatgcgagaagaagaaagga 624

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 623 atatctgacccaatttcac 605
to top
>gb|AY136394.1| Arabidopsis thaliana putative ripening-associated protein (At2g26930)
            mRNA, complete cds
          Length = 1285

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
            |||| |||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 1057 acgttcttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 998

                                                
Query: 333  acaatcgtgcttccacttcctgacataaaaacagca 368
            | ||| ||||||||||| || |||||||| ||||||
Sbjct: 997  ataatagtgcttccactcccagacataaacacagca 962



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 631 tcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaagggg 690
           |||||||||||||| ||||| || |||||||| || |||||  | || |||||||| || 
Sbjct: 700 tcttggacaatctcacctctcccagtacaataggcagctccatgcgagaagaagaaagga 641

                              
Query: 691 atatctgatccaatctcac 709
           |||||||| ||||| ||||
Sbjct: 640 atatctgacccaatttcac 622
to top
>gb|DQ269453.1| Stevia rebaudiana 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           mRNA, partial cds
          Length = 428

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtacaatatgctgctcctcgtgaaaagaagaaggggatatctgatccaatctcaccagac 714
           ||||| |||||||||||  ||||||| ||||| || ||||| || ||||| || ||||||
Sbjct: 428 gtacagtatgctgctccatgtgaaaaaaagaacggaatatcagaaccaatttcgccagac 369

                   
Query: 715 cattcttg 722
           ||||||||
Sbjct: 368 cattcttg 361
to top
>gb|U62773.1|SLU62773 Lycopersicon esculentum ripening-associated protein (pTOM41) gene,
           partial cds; nuclear gene for chromoplast product
          Length = 1423

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 628 atatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaag 687
           ||||| || |||| ||| || ||||| ||||| || ||||||||  | || |||||||| 
Sbjct: 811 atatcctgaacaacctcacccctacccgtacagtaggctgctccatgagagaagaagaaa 752

                                              
Query: 688 gggatatctgatccaatctcaccagaccattcttg 722
           || ||||| || ||||||||||||||||| |||||
Sbjct: 751 ggaatatcagaaccaatctcaccagaccactcttg 717



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 547 cgcttgtaaacttcagcggttgagcatgc 575
           ||||||||||||||||| || ||||||||
Sbjct: 892 cgcttgtaaacttcagcagtggagcatgc 864
to top
>gb|AF263101.1|AF263101 Lycopersicon esculentum 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase (ispE) mRNA, partial cds; chloroplast gene for
           chloroplast product
          Length = 1206

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 628 atatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaag 687
           ||||| || |||| ||| || ||||| ||||| || ||||||||  | || |||||||| 
Sbjct: 734 atatcctgaacaacctcacccctacccgtacagtaggctgctccatgagagaagaagaaa 675

                                              
Query: 688 gggatatctgatccaatctcaccagaccattcttg 722
           || ||||| || ||||||||||||||||| |||||
Sbjct: 674 ggaatatcagaaccaatctcaccagaccactcttg 640



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 547 cgcttgtaaacttcagcggttgagcatgc 575
           ||||||||||||||||| || ||||||||
Sbjct: 815 cgcttgtaaacttcagcagtggagcatgc 787
to top
>gb|AF258339.1|AF258339 Expression vector pNCO-HIS6-TM-YCHB
           4-diphosphocytidyl-2C-methyl-D-erythritol kinase mRNA,
           complete cds
          Length = 4441

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 628 atatcttggacaatctctcctctaccggtacaatatgctgctcctcgtgaaaagaagaag 687
           ||||| || |||| ||| || ||||| ||||| || ||||||||  | || |||||||| 
Sbjct: 638 atatcctgaacaacctcacccctacccgtacagtaggctgctccatgagagaagaagaaa 579

                                              
Query: 688 gggatatctgatccaatctcaccagaccattcttg 722
           || ||||| || ||||||||||||||||| |||||
Sbjct: 578 ggaatatcagaaccaatctcaccagaccactcttg 544



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 547 cgcttgtaaacttcagcggttgagcatgc 575
           ||||||||||||||||| || ||||||||
Sbjct: 719 cgcttgtaaacttcagcagtggagcatgc 691
to top
>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 715    cattcttgaagatctttttct 735
              |||||||||||||||||||||
Sbjct: 118446 cattcttgaagatctttttct 118466
to top
>gb|AC113033.13| Mus musculus chromosome 7, clone RP23-220I5, complete sequence
          Length = 177962

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   taaaaacagcactgtaatctc 378
             |||||||||||||||||||||
Sbjct: 99737 taaaaacagcactgtaatctc 99757
to top
>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 715   cattcttgaagatctttttct 735
             |||||||||||||||||||||
Sbjct: 70329 cattcttgaagatctttttct 70309
to top
>gb|AC130203.4| Mus musculus BAC clone RP24-413E20 from chromosome 15, complete sequence
          Length = 182040

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 109    acaaccacaaaactgagacca 129
              |||||||||||||||||||||
Sbjct: 148037 acaaccacaaaactgagacca 148057
to top
>emb|Z54073.2|HSN13E1 Human DNA sequence from clone LL22NC03-13E1 on chromosome 22 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 38761

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   agtgagaaagcgagcctctga 265
             |||||||||||||||||||||
Sbjct: 21560 agtgagaaagcgagcctctga 21540
to top
>gb|AC165051.2| Phakopsora pachyrhizi clone JGIAFNA-1077C21, complete sequence
          Length = 35591

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 717   ttcttgaagatctttttctga 737
             |||||||||||||||||||||
Sbjct: 15298 ttcttgaagatctttttctga 15318
to top
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 273   acgtccttgtagtcttcatcgtcatacacaaacgcaggtgggtctggggaaccaattccg 332
             |||| |||||| |||||||| ||||| | |||   ||| || ||||| |||||||| |||
Sbjct: 12500 acgttcttgtattcttcatcatcatatataaattgaggaggatctggtgaaccaataccg 12441

                              
Query: 333   acaatcgtgcttccact 349
             | ||| |||||||||||
Sbjct: 12440 ataatagtgcttccact 12424


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,508,543
Number of Sequences: 3902068
Number of extensions: 6508543
Number of successful extensions: 117712
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117600
Number of HSP's gapped (non-prelim): 105
length of query: 752
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 729
effective length of database: 17,143,297,704
effective search space: 12497464026216
effective search space used: 12497464026216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top