ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19b07 |
|---|---|
| Clone Library Name | barley_pub |
>LIN53_CAEEL (P90916) Probable histone-binding protein lin-53 (Abnormal cell| lineage protein 53) Length = 417 Score = 32.0 bits (71), Expect = 0.88 Identities = 25/81 (30%), Positives = 38/81 (46%) Frame = +3 Query: 234 SSSHQKMRHVDVLIRLSFHQNSEDVDDIVRECPEQHEGHKAGQNSFN*NPAPTIEVCVD* 413 SS K HV L ++ Q++ED +D E H GH A + F+ NP VC Sbjct: 327 SSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVVCSVS 386 Query: 414 EL*LCQEPKRCYHHYQKVEDE 476 E + Q + + Y +V++E Sbjct: 387 EDNILQVWQMADNIYNEVDEE 407
>HAT2_YEAST (P39984) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 401 Score = 30.8 bits (68), Expect = 2.0 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 15/73 (20%) Frame = +3 Query: 210 HMLGSSDISSSHQKMRHVDVLI---------------RLSFHQNSEDVDDIVRECPEQHE 344 HM G D ++ + HVD ++ ++ Q +D +D V E H Sbjct: 290 HMSGHEDAVNNLEFSTHVDGVVVSSGSDNRLMMWDLKQIGAEQTPDDAEDGVPELIMVHA 349 Query: 345 GHKAGQNSFN*NP 383 GH++ N F+ NP Sbjct: 350 GHRSSVNDFDLNP 362
>ADAM2_RABIT (Q28660) ADAM 2 precursor (A disintegrin and metalloproteinase| domain 2) (Fertilin beta subunit) (PH-30) (PH30) (PH30-beta) Length = 751 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +1 Query: 247 RRCGMLMCSSDSPSIRTQKMWTISYANVQNS 339 R+CG LMC + +I K TI YANV S Sbjct: 540 RKCGKLMCKHTTENIIDIKNATIIYANVSGS 570
>WH16_STRCO (P23157) 16.7 kDa protein in whiE locus (WhiE ORF II)| Length = 157 Score = 30.0 bits (66), Expect = 3.3 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%) Frame = +3 Query: 195 LGEILHMLGSSDISSSHQKMRHV-----DVLIRLSFHQ------------NSEDVDDIVR 323 L + H LG+ Q MRH DV RL FH ++ED + Sbjct: 74 LDGVPHSLGTGQGLLIPQDMRHRFRNAGDVEARLVFHLGPLAPRPELGHVDTEDAEGNAL 133 Query: 324 ECPEQHEGHKAGQNSFN*NPAPTIEV 401 C H GH AG PAP EV Sbjct: 134 PCDGAHAGHAAGHE----RPAPAAEV 155
>DOPP1_HUMAN (Q86YN1) Dolichyldiphosphatase 1 (EC 3.6.1.43) (Dolichyl| pyrophosphate phosphatase 1) Length = 238 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = -1 Query: 449 VASLGLLAK----SKFSVHTYFDSWSRILVEGVLAGLMSFVLF 333 V SLGLLA S V+ + +WS++L G+ GLM+ F Sbjct: 138 VLSLGLLAVAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAIAWF 180
>HAT2_ASHGO (Q75C99) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 423 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 270 LIRLSFHQNSEDVDDIVRECPEQHEGHKAGQNSFN*NP 383 L ++ Q+ +D DD E H GH++ N F+ NP Sbjct: 347 LTQIGAEQSQDDADDGAPELMMMHAGHRSPVNEFSFNP 384
>RAPA_SHIFL (Q7UDT5) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 264 DVLIRLSFHQNSEDVDDIVRECPEQHEGHKA 356 D++ L+ +E DD+++ C EQHE KA Sbjct: 648 DLINYLASPDQTEGFDDLIKSCREQHEALKA 678
>RAPA_ECOLI (P60240) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 264 DVLIRLSFHQNSEDVDDIVRECPEQHEGHKA 356 D++ L+ +E DD+++ C EQHE KA Sbjct: 648 DLINYLASPDQTEGFDDLIKNCREQHEALKA 678
>RAPA_ECOL6 (Q8FL92) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 264 DVLIRLSFHQNSEDVDDIVRECPEQHEGHKA 356 D++ L+ +E DD+++ C EQHE KA Sbjct: 648 DLINYLASPDETEGFDDLIKNCREQHEALKA 678
>RAPA_ECO57 (P60241) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 264 DVLIRLSFHQNSEDVDDIVRECPEQHEGHKA 356 D++ L+ +E DD+++ C EQHE KA Sbjct: 648 DLINYLASPDQTEGFDDLIKNCREQHEALKA 678
>UBIB_NEIMA (Q9JVQ5) Probable ubiquinone biosynthesis protein ubiB| Length = 503 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -3 Query: 423 VKVLSPHILR*LEQDFS*RSFGRPYVLRAVLDIRVRYRPHLLSSDGRRV 277 VKVL P++L +EQD S FG +V R L SDGRR+ Sbjct: 147 VKVLRPNLLPLIEQDLSLMRFGAAWVER-------------LFSDGRRL 182
>ILF3_BRARE (Q6NXA4) Interleukin enhancer-binding factor 3 homolog| Length = 833 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 361 KTPSTKILLQLSKYVWTENFDFAKSPRDATIIIRK*KTKP 480 K S + +QL + V E +D RDATI+I+ K P Sbjct: 127 KKVSDNLAVQLKQLVTEEKYDVKPCIRDATIVIKNAKEPP 166
>CAF1_DROME (Q24572) Probable histone-binding protein Caf1 (Chromatin assembly| factor 1 p55 subunit) (CAF-1 p55 subunit) (dCAF-1) (Nucleosome remodeling factor 55 kDa subunit) (NURF-55) Length = 430 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 234 SSSHQKMRHVDVLIRLSFHQNSEDVDDIVRECPEQHEGHKAGQNSFN*NPAPTIEVC 404 SS + HV L ++ Q++ED +D E H GH A + F+ NP +C Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,163,024 Number of Sequences: 219361 Number of extensions: 1285131 Number of successful extensions: 3093 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3015 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3093 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
