ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal18l20 |
|---|---|
| Clone Library Name | barley_pub |
>LRP11_MOUSE (Q8CB67) Low-density lipoprotein receptor-related protein 11| precursor Length = 483 Score = 33.1 bits (74), Expect = 0.70 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -3 Query: 490 GCSKSCSKWQLISDSGMHVSAELTKNGTRVCLDAGPDGVITTDQCKCLTED 338 GCS +CS++ DSG + L +G R C PDG D C+ L D Sbjct: 289 GCSSACSRYHFFCDSGCCIDIALACDGVRQC----PDG-SDEDFCQNLALD 334
>HXB6B_BRARE (Q9YGT4) Homeobox protein Hox-B6b (Hox-A7)| Length = 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 11/45 (24%) Frame = -3 Query: 376 VITTDQCKC-----------LTEDPTCDPESQWFKVISSSRGMPG 275 V+T DQCK TED C P W + ++S GMPG Sbjct: 100 VLTQDQCKTDCTEQGTERYFSTEDKPCTPVYPWMQRMNSCNGMPG 144
>MT2_BRARP (Q39269) Metallothionein-like protein BIF98| Length = 80 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = -3 Query: 514 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 347 G K G GC C + + SG + E G + +A +GV D+CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDRCKC- 68 Query: 346 TEDPTCDP 323 D CDP Sbjct: 69 GSDCKCDP 76
>MT2_BRARA (P69164) Metallothionein-like protein type 2| Length = 80 Score = 30.8 bits (68), Expect = 3.5 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = -3 Query: 514 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 347 G K G GC C + + SG + E G + +A +GV D CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDACKC- 68 Query: 346 TEDPTCDP 323 D CDP Sbjct: 69 GSDCKCDP 76
>MT22_BRAJU (P69163) Metallothionein-like protein type 2, MT2-18| Length = 80 Score = 30.8 bits (68), Expect = 3.5 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = -3 Query: 514 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 347 G K G GC C + + SG + E G + +A +GV D CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDACKC- 68 Query: 346 TEDPTCDP 323 D CDP Sbjct: 69 GSDCKCDP 76
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +3 Query: 366 VVMTPSGPASKHTLVPFLVSSAETCIPESDISCHFEQDLLQPVPSFAVSPTDLASRHC 539 V + P+GPA K +L P + + P + C ++ + P P+ S + L +R C Sbjct: 63 VKLLPAGPAPKPSLCPASPTQPGSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSC 120
>ZN238_HUMAN (Q99592) Zinc finger protein 238 (Transcriptional repressor RP58)| (58 kDa repressor protein) (Zinc finger protein C2H2-171) (Translin-associated zinc finger protein 1) (TAZ-1) (Zinc finger and BTB domain-containing protein 18) Length = 522 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Frame = -3 Query: 586 AWNYTSTYELVLKQTGQCLE-AKSVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNG 410 A +Y Y++V + E A + D+ K S K + +SD H++ +L + Sbjct: 100 AASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHIAGDLPSDE 159 Query: 409 TRVCLDAGPDGVITTDQCKCLTEDPTCDPESQWFKVISSSRGMP---GEA 269 D G D + K D +P + W ++ S S G+P GEA Sbjct: 160 -----DEGEDEKLNILPSK---RDLAAEPGNMWMRLPSDSAGIPQAGGEA 201
>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600| Length = 299 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Frame = -1 Query: 234 LQHQVCRGSNLDTWCA------CVLLEDKVVQANSTMIWEVTRKMSAS-SRTPVCIMYHD 76 +Q VC + C C ++K+ AN +SAS S P C + + Sbjct: 3 IQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQE 62 Query: 75 ISTFFFC-QNKSLVC 34 S FFFC Q+++L+C Sbjct: 63 ASGFFFCLQDRALLC 77
>ZN238_MOUSE (Q9WUK6) Zinc finger protein 238 (Zfp-238) (Transcriptional| repressor RP58) (58 kDa repressor protein) Length = 522 Score = 30.0 bits (66), Expect = 6.0 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Frame = -3 Query: 586 AWNYTSTYELVLKQTGQCLE-AKSVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNG 410 A +Y Y++V + E A + D+ K S K + +SD H++ +L + Sbjct: 100 AASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDE 159 Query: 409 TRVCLDAGPDGVITTDQCKCLTEDPTCDPESQWFKVISSSRGMP---GEA 269 D G D + K D +P + W ++ S S G+P GEA Sbjct: 160 -----DEGEDDKLNILPSK---RDLAAEPGNMWMRLPSDSAGIPQAGGEA 201
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.6 bits (65), Expect = 7.8 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Frame = -3 Query: 541 GQCLEAK---------SVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCLDA 389 GQC+ AK G+ K S +CS + I S +SA L NG C D Sbjct: 3563 GQCIPAKWKCDGHEDCKYGEDEKSCEPASPTCSSREYICASDGCISASLKCNGEYDCAD- 3621 Query: 388 GPDGVITTDQCK 353 G D + +CK Sbjct: 3622 GSDEMDCVTECK 3633
>Y2027_VIBCH (Q9KQH1) Maf-like protein VC2027| Length = 193 Score = 29.6 bits (65), Expect = 7.8 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3 Query: 475 CSKWQLISDSGMHVSAELTKNGTRVCLDAGPDGVITTDQCKCLTED 338 C + LI ++ H+ L +N R C A P VI +DQ C+ +D Sbjct: 33 CDETPLIGETPEHLLMRLAENKARSCFLADPSLVIGSDQV-CVIDD 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,295,945 Number of Sequences: 219361 Number of extensions: 2220826 Number of successful extensions: 5527 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5525 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
