ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19a18 |
|---|---|
| Clone Library Name | barley_pub |
>RPOB_NEIG1 (Q5F5R5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 33.1 bits (74), Expect = 0.90 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Frame = -2 Query: 679 RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 500 RRKAG+ E N YN G+K + SL + I SN + S A V +G Sbjct: 1176 RRKAGELREFLNKLYNGSGKKEDLDSLTDEEII----ELASNLRKGASFASPV-FDGAKE 1230 Query: 499 SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 383 SE ++L+ + + DP NDS + +Y G G ++ Sbjct: 1231 SEIREMLNLAYPS-----EDPEVEKLGFNDSKTQITLYDGRSGEAF 1271
>PSBC_WHEAT (Q9XPS4) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 31.6 bits (70), Expect = 2.6 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -2 Query: 535 HARLVPLEG--CSASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHMKL 362 +ARL+ L G A A L WA AMN++ + P+KP+ +GQG + L Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPM---------YGQGLILL 89 Query: 361 PH 356 PH Sbjct: 90 PH 91
>YMZ2_YEAST (Q03177) Hypothetical 94.3 kDa Trp-Asp repeats-containing protein| in SNZ1-YPK2 intergenic region Length = 834 Score = 31.6 bits (70), Expect = 2.6 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Frame = -2 Query: 712 RPPVHRNRANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHH--DAFVSNAQNDY 539 R P R+ + R ++ + S NN+ + H L NL P+ HH D ++ N Sbjct: 518 RKPKGLARSGSLRSIFSKSMSRSSSQNNEEKPHHHLKLTNLLPLPHHSNDHYIKNTDYIS 577 Query: 538 SHARLVPLEGCSAS--EASQLLS 476 HA P+ S + E S+ LS Sbjct: 578 FHAHNAPVTCVSIAPPETSKTLS 600
>CATA_NEIGO (Q59602) Catalase (EC 1.11.1.6)| Length = 500 Score = 30.8 bits (68), Expect = 4.5 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Frame = -2 Query: 712 RPPVHRNRANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQND--- 542 R PVH N+ + + +A + + A+Y N+ G+ S P P I+ DA + + D Sbjct: 360 RCPVHSNQRDGQGRATELRQPAHYEPNSFGQWSQQPDFAEPPLKINGDAAHWDYRQDDDD 419 Query: 541 -YSHARLVPLEGCSASEASQLLSERWAAAMNMYNDPNDSPD 422 +S R L Q L + AAAM D+PD Sbjct: 420 YFSQPR--ALFNLMNDAQKQALFDNTAAAM------GDAPD 452
>RPOB_NEIMB (Q59622) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 30.8 bits (68), Expect = 4.5 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Frame = -2 Query: 679 RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 500 +RKAG+ E N YN G+K + +L + I SN + S A V +G Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230 Query: 499 SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 383 SE ++L+ + + +DP NDS + +Y G G ++ Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271
>RPOB_NEIMA (P57009) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 30.8 bits (68), Expect = 4.5 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Frame = -2 Query: 679 RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 500 +RKAG+ E N YN G+K + +L + I SN + S A V +G Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230 Query: 499 SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 383 SE ++L+ + + +DP NDS + +Y G G ++ Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271
>CTR1_ARATH (Q05609) Serine/threonine-protein kinase CTR1 (EC 2.7.11.1)| Length = 821 Score = 30.0 bits (66), Expect = 7.6 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%) Frame = -2 Query: 697 RNRANNRRK---AGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHAR 527 R + + RR+ A D A+ NY +N + PPI+H D N D + Sbjct: 643 REQLDERRRLSMAYDVAKGMNYLHNRN------------PPIVHRDLKSPNLLVDKKYTV 690 Query: 526 LVPLEGCSASEASQLLSERWAAAMNMYNDPNDSPDKP 416 V G S +AS LS + AA + P D+P Sbjct: 691 KVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEP 727
>GATA3_MOUSE (P23772) Trans-acting T-cell-specific transcription factor GATA-3| (GATA-binding factor 3) Length = 443 Score = 29.6 bits (65), Expect = 10.0 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 9/113 (7%) Frame = -2 Query: 655 EKANYSYNNDGEKSHVPS---------LKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCS 503 E+ + +N DG+ +HVPS ++ PP HH + V + H L L+G Sbjct: 44 EEVDVLFNIDGQGNHVPSYYGNSVRATVQRYPP-THHGSQV--CRPPLLHGSLPWLDGGK 100 Query: 502 ASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHMKLPHQMNF 344 A + S + + + + SP +Y + SS GH PH F Sbjct: 101 ALSSHHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSLAAGHSS-PHLFTF 152
>PSBC_MESVI (Q9MUW1) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 29.6 bits (65), Expect = 10.0 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -2 Query: 535 HARLVPLEG--CSASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHMKL 362 +ARL+ L G A A L WA AMN++ + +P+KP+ + QG + L Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFTPEKPM---------YEQGLILL 89 Query: 361 PH 356 PH Sbjct: 90 PH 91
>HEPA_HHV11 (P10192) DNA helicase/primase complex-associated protein| Length = 750 Score = 29.6 bits (65), Expect = 10.0 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = -2 Query: 529 RLVPLEGCSASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHM---KLP 359 RLVP + C+A A + L AA+ + + S K + G GG+ WG ++ Sbjct: 460 RLVP-DTCNACPALRQLLGGVMAAVCLQIEETASSVKFAVCGGDGGAFWGVFNVDPQDAD 518 Query: 358 HQMNFLEDLRRAVDAQTGLAAALN 287 +ED RRA++ G N Sbjct: 519 AASGVIEDARRAIETAVGAVLRAN 542
>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 309 Score = 29.6 bits (65), Expect = 10.0 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +2 Query: 311 LSIYRTTQIFKEVHLMRKFHVTLTPRRSARSSVHYWFIRGIIWVII 448 L++ + VH R FHVT S RS+ W + GIIWV I Sbjct: 113 LTVLSVVRFQATVHPFRMFHVT-----SVRSA---WILCGIIWVFI 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,973,161 Number of Sequences: 219361 Number of extensions: 2219712 Number of successful extensions: 6569 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6270 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6566 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
