No.
Definition
Score (bits)
E Value
1 emb|AL662993.3|OSJN00195 Oryza sativa genomic DNA, chromosome 4,...
84
8e-13
2 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
84
8e-13
3 ref|XM_474977.1| Oryza sativa (japonica cultivar-group), predic...
52
0.003
4 emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4,...
52
0.003
5 dbj|AK120507.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.003
6 ref|NM_196029.1| Oryza sativa (japonica cultivar-group) putative...
48
0.042
7 gb|AC083945.3| Oryza sativa (japonica cultivar-group) chromosome...
48
0.042
8 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.042
9 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.042
10 dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D...
48
0.042
11 dbj|AP004857.2| Oryza sativa (japonica cultivar-group) genomic D...
48
0.042
12 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
48
0.042
13 ref|XM_474969.1| Oryza sativa (japonica cultivar-group), predic...
46
0.16
14 ref|XM_472794.1| Oryza sativa (japonica cultivar-group), predic...
46
0.16
15 gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome...
46
0.16
16 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
46
0.16
17 dbj|AK107498.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.16
18 dbj|AK065195.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.16
19 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
46
0.16
20 emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,...
46
0.16
21 ref|XM_474975.1| Oryza sativa (japonica cultivar-group), predic...
44
0.65
22 gb|AC009412.6| Homo sapiens BAC clone RP11-425P5 from 7, complet...
44
0.65
23 emb|AL590408.15| Human DNA sequence from clone RP11-227F8 on chr...
44
0.65
24 gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosom...
42
2.6
25 gb|DQ158857.1| Bigelowiella natans nucleomorph chromosome 2, par...
42
2.6
26 gb|AF530159.1| Nicotiana glutinosa tousled-like protein kinase (...
42
2.6
27 gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell...
42
2.6
28 gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswel...
42
2.6
29 gb|AC122129.9| Homo sapiens chromosome 17, clone RP1-253P7, comp...
42
2.6
30 dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.6
31 gb|DQ208194.1| Mayetiola destructor Mde8i18_1 gene, partial cds;...
42
2.6
32 gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, comple...
42
2.6
33 gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 ...
42
2.6
34 emb|AL354000.7|HS253P07 Homo from PAC RP1-253P07 and PAC RP1-28...
42
2.6
>emb|AL662993.3 |OSJN00195 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015G09,
complete sequence
Length = 123375
Score = 83.8 bits (42), Expect = 8e-13
Identities = 74/84 (88%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 657 gagaaaccttgctgacccaaaatcaccaacccttgcagtcatgtcatagtccaaaagaac 716
||||||| ||||||| ||||||||||||| |||| ||||| ||||||||||| |||||
Sbjct: 35365 gagaaactttgctgagccaaaatcaccaa---ttgcggtcatatcatagtccaatagaac 35309
Query: 717 attgcctggcttcaaatcgcagtg 740
||||| |||||||||||| |||||
Sbjct: 35308 attgcttggcttcaaatcacagtg 35285
Score = 65.9 bits (33), Expect = 2e-07
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 294 cattcccggtcgatctttaggcgattccatggaacacaggagggcaacttcaaccaa 350
|||||| ||||||||||| || ||||||||||| |||| |||| |||||||||||||
Sbjct: 51179 cattcctggtcgatctttcggtgattccatggagcacaagaggccaacttcaaccaa 51235
Score = 52.0 bits (26), Expect = 0.003
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 273 aattctggcacaaacttcccccattcccggtcgatctttaggcgattccatggaacacag 332
|||| ||||||||||||||| |||||| || | ||| || || |||||| ||||||||||
Sbjct: 89306 aattttggcacaaacttccctcattcctggcctatcatttggtgattccttggaacacag 89247
Query: 333 gagggcaacttcaa 346
||| ||| |||||
Sbjct: 89246 aaggccaatttcaa 89233
Score = 52.0 bits (26), Expect = 0.003
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 658 agaaaccttgctgacccaaaatcaccaacccttgcagtcatgtcatagtccaaaagaa 715
|||||| | ||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 88830 agaaacttagctgacccaaaatcaccaatgcgtgaggtcatgtcataatccaaaagaa 88773
Score = 48.1 bits (24), Expect = 0.042
Identities = 111/140 (79%)
Strand = Plus / Minus
Query: 453 gctaacaagcttgtgcaggctcaggccatcggtgaacatcgcatccgtcggtcgcctacg 512
|||||||| |||||| ||||| | ||| ||| ||||||| ||||| ||||||| | | |
Sbjct: 35638 gctaacaaacttgtgaaggctgatgccgtcgatgaacattgcatctgtcggtctcattcc 35579
Query: 513 ggtgagcatttccagaagcaagaccccgaaaccatagacatcacaccctgttgaaacttt 572
||||||||||| || || || || || |||| || |||||||| || || || | |||
Sbjct: 35578 agtgagcatttcaagcagtaacactccaaaactgtacacatcacatccggtcgagatttt 35519
Query: 573 gtatcccatgcaatactctg 592
||||||||| | ||||||||
Sbjct: 35518 gtatcccattccatactctg 35499
Score = 44.1 bits (22), Expect = 0.65
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 658 agaaaccttgctgacccaaaatcacc 683
|||||| |||||||||||||||||||
Sbjct: 70776 agaaactttgctgacccaaaatcacc 70751
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 83.8 bits (42), Expect = 8e-13
Identities = 74/84 (88%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 657 gagaaaccttgctgacccaaaatcaccaacccttgcagtcatgtcatagtccaaaagaac 716
||||||| ||||||| ||||||||||||| |||| ||||| ||||||||||| |||||
Sbjct: 8421990 gagaaactttgctgagccaaaatcaccaa---ttgcggtcatatcatagtccaatagaac 8421934
Query: 717 attgcctggcttcaaatcgcagtg 740
||||| |||||||||||| |||||
Sbjct: 8421933 attgcttggcttcaaatcacagtg 8421910
Score = 65.9 bits (33), Expect = 2e-07
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 294 cattcccggtcgatctttaggcgattccatggaacacaggagggcaacttcaaccaa 350
|||||| ||||||||||| || ||||||||||| |||| |||| |||||||||||||
Sbjct: 8437804 cattcctggtcgatctttcggtgattccatggagcacaagaggccaacttcaaccaa 8437860
Score = 52.0 bits (26), Expect = 0.003
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 273 aattctggcacaaacttcccccattcccggtcgatctttaggcgattccatggaacacag 332
|||| ||||||||||||||| |||||| || | ||| || || |||||| ||||||||||
Sbjct: 8475931 aattttggcacaaacttccctcattcctggcctatcatttggtgattccttggaacacag 8475872
Query: 333 gagggcaacttcaa 346
||| ||| |||||
Sbjct: 8475871 aaggccaatttcaa 8475858
Score = 52.0 bits (26), Expect = 0.003
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 658 agaaaccttgctgacccaaaatcaccaacccttgcagtcatgtcatagtccaaaagaa 715
|||||| | ||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 8475455 agaaacttagctgacccaaaatcaccaatgcgtgaggtcatgtcataatccaaaagaa 8475398
Score = 48.1 bits (24), Expect = 0.042
Identities = 111/140 (79%)
Strand = Plus / Minus
Query: 453 gctaacaagcttgtgcaggctcaggccatcggtgaacatcgcatccgtcggtcgcctacg 512
|||||||| |||||| ||||| | ||| ||| ||||||| ||||| ||||||| | | |
Sbjct: 8422263 gctaacaaacttgtgaaggctgatgccgtcgatgaacattgcatctgtcggtctcattcc 8422204
Query: 513 ggtgagcatttccagaagcaagaccccgaaaccatagacatcacaccctgttgaaacttt 572
||||||||||| || || || || || |||| || |||||||| || || || | |||
Sbjct: 8422203 agtgagcatttcaagcagtaacactccaaaactgtacacatcacatccggtcgagatttt 8422144
Query: 573 gtatcccatgcaatactctg 592
||||||||| | ||||||||
Sbjct: 8422143 gtatcccattccatactctg 8422124
Score = 46.1 bits (23), Expect = 0.16
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 585 atactctggagcgacgtatccaattgttcct 615
|||||||||| |||||||||||| |||||||
Sbjct: 23269169 atactctggatcgacgtatccaaatgttcct 23269199
Score = 44.1 bits (22), Expect = 0.65
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 658 agaaaccttgctgacccaaaatcacc 683
|||||| |||||||||||||||||||
Sbjct: 8457401 agaaactttgctgacccaaaatcacc 8457376
>gb|DQ208194.1 | Mayetiola destructor Mde8i18_1 gene, partial cds; Mde8i18_2,
Mde8i18_3, Mde8i18_4, and Mde8i18_5 genes, complete cds;
and Mde8i18_6 gene, partial cds
Length = 42642
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 722 ctggcttcaaatcgcagtgga 742
|||||||||||||||||||||
Sbjct: 4003 ctggcttcaaatcgcagtgga 3983
>emb|AL354000.7 |HS253P07 Homo from PAC RP1-253P07 and PAC RP1-281I13 (complete covert by PAC
RP1-253P07), complete sequence
Length = 159876
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 634 tctggagtaccaggaactgaa 654
|||||||||||||||||||||
Sbjct: 147417 tctggagtaccaggaactgaa 147437
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,808,590
Number of Sequences: 3902068
Number of extensions: 6808590
Number of successful extensions: 129225
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128748
Number of HSP's gapped (non-prelim): 471
length of query: 742
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 719
effective length of database: 17,143,297,704
effective search space: 12326031049176
effective search space used: 12326031049176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)