ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 242 bits (122), Expect = 1e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 20142960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 20143019 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcacttgg 211 |||| ||| ||||| ||||| ||||| ||||| || | ||||||| || |||||| ||| Sbjct: 20143020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 20143079 Query: 212 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 271 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 20143080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 20143139 Query: 272 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 331 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 20143140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 20143199 Query: 332 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 388 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 20143200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 20143256 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 457 cggcgctgacaccgaggtgtgcatgccgc 485 |||||| |||||||||||||||||||||| Sbjct: 20143343 cggcgccgacaccgaggtgtgcatgccgc 20143371
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 242 bits (122), Expect = 1e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 8960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 9019 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcacttgg 211 |||| ||| ||||| ||||| ||||| ||||| || | ||||||| || |||||| ||| Sbjct: 9020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 9079 Query: 212 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 271 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 9080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 9139 Query: 272 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 331 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 9140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 9199 Query: 332 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 388 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 9200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 9256 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 457 cggcgctgacaccgaggtgtgcatgccgc 485 |||||| |||||||||||||||||||||| Sbjct: 9343 cggcgccgacaccgaggtgtgcatgccgc 9371
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 242 bits (122), Expect = 1e-60 Identities = 253/297 (85%) Strand = Plus / Plus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 131234 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 131293 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcacttgg 211 |||| ||| ||||| ||||| ||||| ||||| || | ||||||| || |||||| ||| Sbjct: 131294 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 131353 Query: 212 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 271 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 131354 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 131413 Query: 272 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 331 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 131414 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 131473 Query: 332 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 388 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 131474 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 131530 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 457 cggcgctgacaccgaggtgtgcatgccgc 485 |||||| |||||||||||||||||||||| Sbjct: 131617 cggcgccgacaccgaggtgtgcatgccgc 131645
>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full insert sequence Length = 1884 Score = 242 bits (122), Expect = 1e-60 Identities = 253/297 (85%) Strand = Plus / Minus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 1492 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 1433 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcacttgg 211 |||| ||| ||||| ||||| ||||| ||||| || | ||||||| || |||||| ||| Sbjct: 1432 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 1373 Query: 212 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 271 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 1372 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 1313 Query: 272 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 331 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 1312 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 1253 Query: 332 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 388 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 1252 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 1196 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 457 cggcgctgacaccgaggtgtgcatgccgc 485 |||||| |||||||||||||||||||||| Sbjct: 1109 cggcgccgacaccgaggtgtgcatgccgc 1081
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 172 bits (87), Expect = 8e-40 Identities = 221/266 (83%) Strand = Plus / Plus Query: 113 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 172 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 5627866 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 5627925 Query: 173 cccttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtg 232 ||||| ||||| || ||||||| || |||||| ||||| |||||||| |||||| || Sbjct: 5627926 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 5627985 Query: 233 aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 292 ||||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| | Sbjct: 5627986 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 5628045 Query: 293 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 352 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 5628046 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 5628105 Query: 353 gaggaggcgatgatgtcgaacgcgtt 378 || || || ||||||||||||||||| Sbjct: 5628106 gacgatgcaatgatgtcgaacgcgtt 5628131
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 172 bits (87), Expect = 8e-40 Identities = 221/266 (83%) Strand = Plus / Plus Query: 113 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 172 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 85073 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 85132 Query: 173 cccttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtg 232 ||||| ||||| || ||||||| || |||||| ||||| |||||||| |||||| || Sbjct: 85133 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 85192 Query: 233 aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 292 ||||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| | Sbjct: 85193 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 85252 Query: 293 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 352 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 85253 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 85312 Query: 353 gaggaggcgatgatgtcgaacgcgtt 378 || || || ||||||||||||||||| Sbjct: 85313 gacgatgcaatgatgtcgaacgcgtt 85338
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 248 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 307 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 11596142 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 11596083 Query: 308 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 367 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 11596082 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 11596023 Query: 368 tcgaacgcgttcatgctcttg 388 ||||||||||||| ||||||| Sbjct: 11596022 tcgaacgcgttcaggctcttg 11596002 Score = 81.8 bits (41), Expect = 2e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 11596265 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 11596206 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcac 207 |||| ||| ||||| || || ||||| ||||| || | ||||||| || |||||| Sbjct: 11596205 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 11596150
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 113 bits (57), Expect = 6e-22 Identities = 212/264 (80%) Strand = Plus / Plus Query: 115 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 174 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 12496072 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 12496131 Query: 175 cttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtgaa 234 ||| || || || | ||||||| || |||||| ||||| |||||||| | |||| |||| Sbjct: 12496132 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 12496191 Query: 235 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 294 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 12496192 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 12496251 Query: 295 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 354 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 12496252 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 12496311 Query: 355 ggaggcgatgatgtcgaacgcgtt 378 || || |||||||||||| |||| Sbjct: 12496312 cgatgcaatgatgtcgaacccgtt 12496335 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 31932183 ccgcgatctcctccagcttggaga 31932206 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 31932304 gatgatgtcgaaggcgttcatgctc 31932328 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 5799716 gatgatgtcgaacgcgttcaggctc 5799692 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 3429789 gatgatgtcgaacgcgttcaggctc 3429765
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 248 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 307 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 150276 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 150217 Query: 308 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 367 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 150216 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 150157 Query: 368 tcgaacgcgttcatgctcttg 388 ||||||||||||| ||||||| Sbjct: 150156 tcgaacgcgttcaggctcttg 150136 Score = 81.8 bits (41), Expect = 2e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 150399 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 150340 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcac 207 |||| ||| ||||| || || ||||| ||||| || | ||||||| || |||||| Sbjct: 150339 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 150284
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 248 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 307 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 56413 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 56354 Query: 308 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 367 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 56353 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 56294 Query: 368 tcgaacgcgttcatgctcttg 388 ||||||||||||| ||||||| Sbjct: 56293 tcgaacgcgttcaggctcttg 56273 Score = 81.8 bits (41), Expect = 2e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 56536 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 56477 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcac 207 |||| ||| ||||| || || ||||| ||||| || | ||||||| || |||||| Sbjct: 56476 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 56421
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 113 bits (57), Expect = 6e-22 Identities = 212/264 (80%) Strand = Plus / Plus Query: 115 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 174 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 7682 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 7741 Query: 175 cttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtgaa 234 ||| || || || | ||||||| || |||||| ||||| |||||||| | |||| |||| Sbjct: 7742 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 7801 Query: 235 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 294 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 7802 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 7861 Query: 295 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 354 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 7862 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 7921 Query: 355 ggaggcgatgatgtcgaacgcgtt 378 || || |||||||||||| |||| Sbjct: 7922 cgatgcaatgatgtcgaacccgtt 7945
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 113 bits (57), Expect = 6e-22 Identities = 212/264 (80%) Strand = Plus / Plus Query: 115 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 174 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 81687 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 81746 Query: 175 cttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtgaa 234 ||| || || || | ||||||| || |||||| ||||| |||||||| | |||| |||| Sbjct: 81747 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 81806 Query: 235 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 294 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 81807 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 81866 Query: 295 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 354 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 81867 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 81926 Query: 355 ggaggcgatgatgtcgaacgcgtt 378 || || |||||||||||| |||| Sbjct: 81927 cgatgcaatgatgtcgaacccgtt 81950
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for class III peroxidase 13 precursor, exons 1-3 Length = 9315 Score = 113 bits (57), Expect = 6e-22 Identities = 212/264 (80%) Strand = Plus / Plus Query: 115 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 174 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 3571 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 3630 Query: 175 cttgtgcccatttcttgtcgcctngaagctcacttggcaatccttggtgcgcgccgtgaa 234 ||| || || || | ||||||| || |||||| ||||| |||||||| | |||| |||| Sbjct: 3631 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 3690 Query: 235 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 294 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 3691 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 3750 Query: 295 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 354 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 3751 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 3810 Query: 355 ggaggcgatgatgtcgaacgcgtt 378 || || |||||||||||| |||| Sbjct: 3811 cgatgcaatgatgtcgaacccgtt 3834
>ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 768 Score = 81.8 bits (41), Expect = 2e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 92 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 151 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 629 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 570 Query: 152 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctngaagctcac 207 |||| ||| ||||| || || ||||| ||||| || | ||||||| || |||||| Sbjct: 569 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 514 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 248 gcgatctcctccagcttggagatgatg 274 ||||||||||||||||||| ||||||| Sbjct: 506 gcgatctcctccagcttggcgatgatg 480
>ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 1135 ccgcgatctcctccagcttggaga 1112 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 1014 gatgatgtcgaaggcgttcatgctc 990
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 118261 ccgcgatctcctccagcttggaga 118284 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 118382 gatgatgtcgaaggcgttcatgctc 118406
>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full insert sequence Length = 1628 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 1261 ccgcgatctcctccagcttggaga 1238 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 1140 gatgatgtcgaaggcgttcatgctc 1116
>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full insert sequence Length = 1690 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 1253 ccgcgatctcctccagcttggaga 1230 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 1132 gatgatgtcgaaggcgttcatgctc 1108
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 246 ccgcgatctcctccagcttggaga 269 |||||||||||||||||||||||| Sbjct: 28910 ccgcgatctcctccagcttggaga 28933 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||| |||||||||||| Sbjct: 29031 gatgatgtcgaaggcgttcatgctc 29055
>ref|XM_550254.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 183 gatgatgtcgaacgcgttcaggctc 159
>ref|NM_186856.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1194 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 180 gatgatgtcgaacgcgttcaggctc 156
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 54991 gatgatgtcgaacgcgttcaagctc 55015
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 509 gaagagcctgangatgatgaagac 532 ||||||||||| |||||||||||| Sbjct: 1239071 gaagagcctgaagatgatgaagac 1239048
>dbj|AB097439.1| Oryza sativa (japonica cultivar-group) transposon AnacC1 DNA, complete sequence Length = 1868 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 808 gatgatgtcgaacgcgttcaggctc 832
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 8393355 gatgatgtcgaacgcgttcaggctc 8393379 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaggcgatgatgtcgaacg 374 |||||||||||||||||||| Sbjct: 19932780 ggaggcgatgatgtcgaacg 19932761
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 6616937 gatgatgtcgaacgcgttcaagctc 6616961
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 98453 gatgatgtcgaacgcgttcaggctc 98477
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 3457 gatgatgtcgaacgcgttcaggctc 3433
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 124418 gatgatgtcgaacgcgttcaggctc 124394
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 108159 gatgatgtcgaacgcgttcaggctc 108135
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 24948 gatgatgtcgaacgcgttcaggctc 24972
>dbj|AK107068.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E08, full insert sequence Length = 1881 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 1072 gatgatgtcgaacgcgttcaagctc 1048
>gb|AY108681.1| Zea mays PCO122768 mRNA sequence Length = 986 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 355 gatgatgtcgaacgcgttcaggctc 331
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttcatgctc 385 |||||||||||||||||||| |||| Sbjct: 16549 gatgatgtcgaacgcgttcaggctc 16525
>ref|NM_188346.1| Oryza sativa (japonica cultivar-group), Ozsa8097 predicted mRNA Length = 1434 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gatgatgtcgaacgcgttca 380 |||||||||||||||||||| Sbjct: 1047 gatgatgtcgaacgcgttca 1028
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cgcaactgctcgccgcgctc 321 |||||||||||||||||||| Sbjct: 776887 cgcaactgctcgccgcgctc 776868
>ref|XM_478426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1822 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaggcgatgatgtcgaacg 374 |||||||||||||||||||| Sbjct: 597 ggaggcgatgatgtcgaacg 578
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tgatggtgttcaccggcgcg 289 |||||||||||||||||||| Sbjct: 1456463 tgatggtgttcaccggcgcg 1456482
>emb|AL512628.12| Human DNA sequence from clone RP11-6P10 on chromosome 10 Contains the gene for 155kD polymerase (RNA) III (DNA directed) (RPC155), the RPS24 gene for ribosomal protein S24 and a CpG island, complete sequence Length = 95562 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 catgtgccacaggagaggaagagc 515 |||||||||||| ||||||||||| Sbjct: 83534 catgtgccacagcagaggaagagc 83511
>ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP and coiled-coil domain-containing 2 (LOC661131), mRNA Length = 3972 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctcctccagcttggagatga 272 |||||||||||||||||||| Sbjct: 1329 ctcctccagcttggagatga 1310
>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497), mRNA Length = 2451 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gacgagctccggcgtgagctggaa 147 |||||||||| ||||||||||||| Sbjct: 862 gacgagctccagcgtgagctggaa 885
>emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 in linkage group 1, complete sequence Length = 80968 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cagcttggagatgatggtgt 278 |||||||||||||||||||| Sbjct: 33787 cagcttggagatgatggtgt 33768
>gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome 16, complete sequence Length = 219500 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 catgtgccacaggagaggaagagc 515 ||||||||||||||||| |||||| Sbjct: 181400 catgtgccacaggagagtaagagc 181377
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttca 380 |||||||||||||||||||| Sbjct: 25478861 gatgatgtcgaacgcgttca 25478880
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acgagctccggcgtgagctg 144 |||||||||||||||||||| Sbjct: 76693 acgagctccggcgtgagctg 76712
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaggcgatgatgtcgaacg 374 |||||||||||||||||||| Sbjct: 97430 ggaggcgatgatgtcgaacg 97411
>ref|XM_313685.2| Anopheles gambiae str. PEST ENSANGP00000013169 (ENSANGG00000010680), partial mRNA Length = 906 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgatgatgtcgaacgcgttc 379 |||||||||||||||||||| Sbjct: 895 cgatgatgtcgaacgcgttc 876
>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full insert sequence Length = 3296 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 actgctcgccgcgctcctca 325 |||||||||||||||||||| Sbjct: 1349 actgctcgccgcgctcctca 1330
>dbj|AK105659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G10, full insert sequence Length = 1822 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ggaggcgatgatgtcgaacg 374 |||||||||||||||||||| Sbjct: 597 ggaggcgatgatgtcgaacg 578
>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence Length = 219420 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 catgtgccacaggagaggaagagc 515 ||||||||||||||||| |||||| Sbjct: 60486 catgtgccacaggagagtaagagc 60463
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tttcttgcatacctggacca 122 |||||||||||||||||||| Sbjct: 2890611 tttcttgcatacctggacca 2890592
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttca 380 |||||||||||||||||||| Sbjct: 25407037 gatgatgtcgaacgcgttca 25407056
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttca 380 |||||||||||||||||||| Sbjct: 48243 gatgatgtcgaacgcgttca 48262
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gatgatgtcgaacgcgttca 380 |||||||||||||||||||| Sbjct: 145669 gatgatgtcgaacgcgttca 145688
>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete sequence Length = 38266 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gctcccttgtgcccatttct 189 |||||||||||||||||||| Sbjct: 14048 gctcccttgtgcccatttct 14029 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,538,053 Number of Sequences: 3902068 Number of extensions: 3538053 Number of successful extensions: 72314 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71683 Number of HSP's gapped (non-prelim): 622 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
