>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  139 bits (70), Expect = 2e-30
 Identities = 97/105 (92%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcggagcanccttncggca-cgggcaaagtaccttgctgngctcctttacctnctccta 59
            ||||| ||| |||| ||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                         
Query: 60   tgcagcaagaganggtgggtg-tgtatggagaattttctaaccgt 103
            |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgt 1418

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  127 bits (64), Expect = 6e-27
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                       
Query: 23  ggcaaagtaccttgctgngctcctttacctnctcctatgcagcaagaganggtgggtgtg 82
           ||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                
Query: 83  tatggagaattttctaaccgt 103
           |||||||||| ||||||||||
Sbjct: 508 tatggagaatgttctaaccgt 488

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  127 bits (64), Expect = 6e-27
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                        
Query: 23   ggcaaagtaccttgctgngctcctttacctnctcctatgcagcaagaganggtgggtgtg 82
            ||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 1418 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 1359

                                 
Query: 83   tatggagaattttctaaccgt 103
            |||||||||| ||||||||||
Sbjct: 1358 tatggagaatgttctaaccgt 1338

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score = 97.6 bits (49), Expect = 6e-18
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                   
Query: 49   acctnctcctatgcagcaagaganggtgggtgtgtatggagaattttctaaccgt 103
            |||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgt 7301



 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 1    gtcggagcanccttncggcacgggcaaagtaccttgctgngctcctttacct 52
            ||||| ||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 7575 gtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 7524

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score = 93.7 bits (47), Expect = 9e-17
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 11   ccttncggcacgggcaaagtaccttgctgngctcctttacctnctcctatgcagcaagag 70
            |||| |||||| |||||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct: 1439 ccttccggcacaggcaaagtgccttgttgtgctcctttacctcctcctatgcagcaagag 1380

                       
Query: 71   anggtgggtgt 81
            | |||||||||
Sbjct: 1379 atggtgggtgt 1369

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 1    gtcggagcanccttncggcacgggcaaagtaccttgctgngctcctttacc 51
            ||||| ||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1215 gtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 11   ccttncggcacgggcaaagtaccttgctgngctcctttacc 51
            |||| |||||| |||||||| ||||| || |||||||||||
Sbjct: 1401 ccttccggcacaggcaaagtgccttgttgtgctcctttacc 1361

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 77  ggtgtgtatggagaattttctaaccgt 103
           |||||||||||||||| ||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgt 282

>gb|AC013452.9| Homo sapiens chromosome 15 clone RP11-325E5 map 15q21.1, complete
             sequence
          Length = 204745

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 75    tgggtgtgtatggagaattttct 97
             ||||||| |||||||||||||||
Sbjct: 51418 tgggtgtttatggagaattttct 51396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 418,279
Number of Sequences: 3902068
Number of extensions: 418279
Number of successful extensions: 24396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24385
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)