ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18i13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF498268.1| Haynaldia villosa clone kong28 mRNA 70 2e-09
2gb|AY370020.1| Trichoderma viride strain YNUCC0183 endo-1,4-beta... 40 2.0
3gb|AY320048.1| Trichoderma viride strain YNUCC0183 endo-1,4-beta... 40 2.0
4gb|AC023675.4| Drosophila melanogaster 3L BAC RP98-3I22 (Roswell... 40 2.0
5gb|AC010042.8| Drosophila melanogaster 3L BAC RP98-5K6 (Roswell ... 40 2.0
6gb|AY156910.1| Trichoderma sp. SY xylanase mRNA, complete cds 40 2.0
7gb|AE003558.3| Drosophila melanogaster chromosome 3L, section 27... 40 2.0
8gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete... 38 7.7
9emb|AL121804.2|DMBR7C10 Drosophila melanogaster BAC clone BACR7C10 38 7.7
10gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell ... 38 7.7
11ref|NM_080712.5| Drosophila melanogaster tweety CG1693-RA, trans... 38 7.7
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
13gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, comple... 38 7.7
14dbj|AK130262.1| Homo sapiens cDNA FLJ26752 fis, clone PRS01829 38 7.7
15gb|AF184227.1|AF184227 Drosophila melanogaster clone LD23194 tty... 38 7.7
16gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 ... 38 7.7
17gb|AE003424.2| Drosophila melanogaster chromosome X, section 8 o... 38 7.7
18emb|BX005283.6| Zebrafish DNA sequence from clone CH211-93G21, c... 38 7.7
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.7
20gb|AF017777.1|AF017777 Drosophila melanogaster tweety (tty), fli... 38 7.7
21emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa... 38 7.7

>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA
          Length = 1474

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 72/84 (85%), Gaps = 3/84 (3%)
 Strand = Plus / Plus

                                                                        
Query: 9    tacgatacgatagatcccgtcttattctagtaggtggnaattaaaaacgaaacacacact 68
            |||||||||||||||| ||||||||||| |   |||| |||| |||||||||||||| ||
Sbjct: 1040 tacgatacgatagatctcgtcttattctgg---gtggcaatttaaaacgaaacacacgct 1096

                                    
Query: 69   cgcgattcatggatggctactact 92
             |||||||||| ||  ||||||||
Sbjct: 1097 tgcgattcatgcataactactact 1120



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>gb|AY370020.1| Trichoderma viride strain YNUCC0183 endo-1,4-beta-xylanase (XYL1)
           gene, complete cds
          Length = 786

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  ggctactactactcgtactg 102
           ||||||||||||||||||||
Sbjct: 133 ggctactactactcgtactg 152



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>gb|AY320048.1| Trichoderma viride strain YNUCC0183 endo-1,4-beta-xylanase mRNA,
           complete cds
          Length = 672

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  ggctactactactcgtactg 102
           ||||||||||||||||||||
Sbjct: 133 ggctactactactcgtactg 152



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>gb|AC023675.4| Drosophila melanogaster 3L BAC RP98-3I22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178338

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gatacgattacgatacgata 20
              ||||||||||||||||||||
Sbjct: 119189 gatacgattacgatacgata 119208



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>gb|AC010042.8| Drosophila melanogaster 3L BAC RP98-5K6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 157225

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gatacgattacgatacgata 20
              ||||||||||||||||||||
Sbjct: 103360 gatacgattacgatacgata 103341



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>gb|AY156910.1| Trichoderma sp. SY xylanase mRNA, complete cds
          Length = 841

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  ggctactactactcgtactg 102
           ||||||||||||||||||||
Sbjct: 183 ggctactactactcgtactg 202



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>gb|AE003558.3| Drosophila melanogaster chromosome 3L, section 27 of 83 of the complete
              sequence
          Length = 284442

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gatacgattacgatacgata 20
              ||||||||||||||||||||
Sbjct: 223918 gatacgattacgatacgata 223937



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>gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete sequence
          Length = 173988

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     atacgattacgatacgata 20
             |||||||||||||||||||
Sbjct: 26527 atacgattacgatacgata 26545



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>emb|AL121804.2|DMBR7C10 Drosophila melanogaster BAC clone BACR7C10
          Length = 56820

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    aaaacgaaacacacactcg 70
             |||||||||||||||||||
Sbjct: 28446 aaaacgaaacacacactcg 28428



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>gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 191342

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     aaaacgaaacacacactcg 70
              |||||||||||||||||||
Sbjct: 137892 aaaacgaaacacacactcg 137874



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>ref|NM_080712.5| Drosophila melanogaster tweety CG1693-RA, transcript variant A (tty),
            mRNA
          Length = 3890

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    atacgattacgatacgata 20
            |||||||||||||||||||
Sbjct: 3494 atacgattacgatacgata 3476



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 84      gctactactactcgtactgtagt 106
               |||||||||||| ||||||||||
Sbjct: 2338324 gctactactactagtactgtagt 2338346



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>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence
          Length = 166305

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     ttaaaaacgaaacacacac 67
              |||||||||||||||||||
Sbjct: 146354 ttaaaaacgaaacacacac 146372



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>dbj|AK130262.1| Homo sapiens cDNA FLJ26752 fis, clone PRS01829
          Length = 2089

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ttaaaaacgaaacacacac 67
           |||||||||||||||||||
Sbjct: 768 ttaaaaacgaaacacacac 750



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>gb|AF184227.1|AF184227 Drosophila melanogaster clone LD23194 tty (tty) mRNA, complete cds
          Length = 3863

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    atacgattacgatacgata 20
            |||||||||||||||||||
Sbjct: 3470 atacgattacgatacgata 3452



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>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete
              sequence
          Length = 315815

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      atacgattacgatacgata 20
              |||||||||||||||||||
Sbjct: 126507 atacgattacgatacgata 126525



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>gb|AE003424.2| Drosophila melanogaster chromosome X, section 8 of 74 of the complete
              sequence
          Length = 274777

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     aaaacgaaacacacactcg 70
              |||||||||||||||||||
Sbjct: 274360 aaaacgaaacacacactcg 274342



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>emb|BX005283.6| Zebrafish DNA sequence from clone CH211-93G21, complete sequence
          Length = 156246

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    aattaaaaacgaaacacac 65
             |||||||||||||||||||
Sbjct: 67205 aattaaaaacgaaacacac 67223



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 84      gctactactactcgtactgtagt 106
               |||||||||||| ||||||||||
Sbjct: 2338268 gctactactactagtactgtagt 2338290



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>gb|AF017777.1|AF017777 Drosophila melanogaster tweety (tty), flightless (fli), dodo (dod),
           penguin (pen), small optic lobes (sol), innocent
           bystander (iby), waclaw (waw), bobby sox (bbx), sluggish
           (slg), helicase (hlc), misato (mst), and la costa (lcs)
           genes, complete cds
          Length = 66669

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   atacgattacgatacgata 20
           |||||||||||||||||||
Sbjct: 465 atacgattacgatacgata 483



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>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 156258

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 84    gctactactactcgtactgtagt 106
             |||||||||||| ||||||||||
Sbjct: 63515 gctactactactagtactgtagt 63537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 979,260
Number of Sequences: 3902068
Number of extensions: 979260
Number of successful extensions: 42408
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42336
Number of HSP's gapped (non-prelim): 71
length of query: 160
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 138
effective length of database: 17,147,199,772
effective search space: 2366313568536
effective search space used: 2366313568536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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