ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
2dbj|AK104751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
3dbj|AK104621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
4dbj|AK070684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 234 2e-58
6gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 234 2e-58
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
8dbj|AK073387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
9gb|AY108108.1| Zea mays PCO072542 mRNA sequence 196 5e-47
10ref|NM_194612.1| Oryza sativa (japonica cultivar-group) putative... 168 1e-38
11dbj|AK110804.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
12gb|AY108047.1| Zea mays PCO103710 mRNA sequence 157 4e-35
13gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
14gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 84 5e-13
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
17gb|AF236109.1|AF236109 Phaseolus vulgaris putative purple acid p... 76 1e-10
18gb|AC154757.2| Mus musculus BAC clone RP23-116J1 from chromosome... 42 1.6
19gb|AF236107.1|AF236107 Ipomoea batatas putative purple acid phos... 42 1.6
20gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map M... 40 6.4
21gb|AY757038.1| Macrohasseltia macroterantha trnL-trnF intergenic... 40 6.4
22gb|AY756988.1| Azara salicifolia trnL-trnF intergenic spacer, pa... 40 6.4
23gb|AC003986.2| Homo sapiens BAC clone CTA-370M10 from 7, complet... 40 6.4
24emb|AJ318884.1|TTU318884 Triticum turgidum subsp. durum xip-II g... 40 6.4
25gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome... 40 6.4
26gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, comple... 40 6.4
27gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, comp... 40 6.4
28gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosom... 40 6.4
29gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8... 40 6.4
30dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.4
31emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in... 40 6.4
32emb|CT823560.2| Human DNA sequence from clone XX-HCC1954_31G13, ... 40 6.4
33gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complet... 40 6.4
34dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.4

>dbj|AK119619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H01, full
            insert sequence
          Length = 1198

 Score =  363 bits (183), Expect = 3e-97
 Identities = 312/355 (87%)
 Strand = Plus / Minus

                                                                        
Query: 121  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1074 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1015

                                                                        
Query: 181  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1014 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 955

                                                                        
Query: 241  tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
            |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 954  tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 895

                                                                        
Query: 301  tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 360
             ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| |
Sbjct: 894  aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 835

                                                                        
Query: 361  ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgtta 420
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct: 834  ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatgccattg 775

                                                                   
Query: 421  accttgaggaccggaagaagcaattgcaggagctcctcggtgtccccatggtcac 475
            ||||| || || ||||| || | |||||| ||||||| |||||| ||||||||||
Sbjct: 774  accttcagaactggaagtagaagttgcagaagctccttggtgtcaccatggtcac 720



to top

>dbj|AK104751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F06, full
            insert sequence
          Length = 1187

 Score =  363 bits (183), Expect = 3e-97
 Identities = 312/355 (87%)
 Strand = Plus / Minus

                                                                        
Query: 121  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004

                                                                        
Query: 181  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944

                                                                        
Query: 241  tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
            |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 943  tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 884

                                                                        
Query: 301  tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 360
             ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| |
Sbjct: 883  aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 824

                                                                        
Query: 361  ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgtta 420
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct: 823  ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatgccattg 764

                                                                   
Query: 421  accttgaggaccggaagaagcaattgcaggagctcctcggtgtccccatggtcac 475
            ||||| || || ||||| || | |||||| ||||||| |||||| ||||||||||
Sbjct: 763  accttcagaactggaagtagaagttgcagaagctccttggtgtcaccatggtcac 709



to top

>dbj|AK104621.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G08, full
            insert sequence
          Length = 1187

 Score =  363 bits (183), Expect = 3e-97
 Identities = 312/355 (87%)
 Strand = Plus / Minus

                                                                        
Query: 121  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004

                                                                        
Query: 181  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944

                                                                        
Query: 241  tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
            |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 943  tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 884

                                                                        
Query: 301  tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 360
             ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| |
Sbjct: 883  aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 824

                                                                        
Query: 361  ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgtta 420
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct: 823  ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatgccattg 764

                                                                   
Query: 421  accttgaggaccggaagaagcaattgcaggagctcctcggtgtccccatggtcac 475
            ||||| || || ||||| || | |||||| ||||||| |||||| ||||||||||
Sbjct: 763  accttcagaactggaagtagaagttgcagaagctccttggtgtcaccatggtcac 709



to top

>dbj|AK070684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062L13, full
            insert sequence
          Length = 1399

 Score =  363 bits (183), Expect = 3e-97
 Identities = 312/355 (87%)
 Strand = Plus / Minus

                                                                        
Query: 121  cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
            |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 1088 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1029

                                                                        
Query: 181  tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
            |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 1028 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 969

                                                                        
Query: 241  tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
            |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 968  tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 909

                                                                        
Query: 301  tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 360
             ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| |
Sbjct: 908  aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 849

                                                                        
Query: 361  ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgtta 420
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct: 848  ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatgccattg 789

                                                                   
Query: 421  accttgaggaccggaagaagcaattgcaggagctcctcggtgtccccatggtcac 475
            ||||| || || ||||| || | |||||| ||||||| |||||| ||||||||||
Sbjct: 788  accttcagaactggaagtagaagttgcagaagctccttggtgtcaccatggtcac 734



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  234 bits (118), Expect = 2e-58
 Identities = 208/238 (87%)
 Strand = Plus / Minus

                                                                           
Query: 121     cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
               |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 7294468 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7294409

                                                                           
Query: 181     tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
               |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 7294408 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7294349

                                                                           
Query: 241     tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
               |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 7294348 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 7294289

                                                                         
Query: 301     tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 358
                ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 7294288 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 7294231



 Score =  107 bits (54), Expect = 3e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                           
Query: 355     ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatg 414
               |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7294117 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatg 7294058

                 
Query: 415     cc 416
               ||
Sbjct: 7294057 cc 7294056



to top

>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score =  234 bits (118), Expect = 2e-58
 Identities = 208/238 (87%)
 Strand = Plus / Minus

                                                                         
Query: 121   cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
             |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 45724 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 45665

                                                                         
Query: 181   tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
             |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 45664 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 45605

                                                                         
Query: 241   tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
             |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 45604 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 45545

                                                                       
Query: 301   tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 358
              ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 45544 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 45487



 Score =  107 bits (54), Expect = 3e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                         
Query: 355   ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatg 414
             |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 45373 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatg 45314

               
Query: 415   cc 416
             ||
Sbjct: 45313 cc 45312



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  234 bits (118), Expect = 2e-58
 Identities = 208/238 (87%)
 Strand = Plus / Minus

                                                                           
Query: 121     cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 180
               |||||| || |||||| |||  |||||||||||| || ||||| ||||| |  | |||||
Sbjct: 7292363 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7292304

                                                                           
Query: 181     tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 240
               |  |||||||  || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 7292303 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7292244

                                                                           
Query: 241     tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 300
               |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||| 
Sbjct: 7292243 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 7292184

                                                                         
Query: 301     tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 358
                ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 7292183 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 7292126



 Score =  107 bits (54), Expect = 3e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                           
Query: 355     ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatg 414
               |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7292012 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtagaagtcgatg 7291953

                 
Query: 415     cc 416
               ||
Sbjct: 7291952 cc 7291951



to top

>dbj|AK073387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043K11, full
            insert sequence
          Length = 2343

 Score =  222 bits (112), Expect = 8e-55
 Identities = 190/216 (87%)
 Strand = Plus / Plus

                                                                        
Query: 143  tggagggctggaagtggtttgttttgcgcgaggtccactcatacaagactttaccagaaa 202
            |||||||||||| || ||||| ||||| |  | ||||||  |||||||  || |||||||
Sbjct: 1633 tggagggctggaggtagtttgctttgctcttgctccacttgtacaagatgttcccagaaa 1692

                                                                        
Query: 203  catcataaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttgcc 262
            ||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 1693 catcacaaaatatgaagtcagcttggtcctggtttatctggagggacatgaacccttgtc 1752

                                                                        
Query: 263  catcataaaagaactggagcttatcatcatttggctggtagactcccctccatgcttttg 322
            |||| |||||||||||||||||||||  |||||||||  ||||||| |||||||||||||
Sbjct: 1753 catcgtaaaagaactggagcttatcagaatttggctgcaagactcctctccatgcttttg 1812

                                                
Query: 323  aaccgcctccactagtgaagtattggattggactgt 358
            |||| |||||||| |||||||||||||| |||||||
Sbjct: 1813 aaccacctccacttgtgaagtattggataggactgt 1848



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                   
Query: 378  caggcagtggtcatgcccattgatgtagaagtcgatgcc 416
            |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1870 caggcagtggtcgtgcccattgatgtagaagtcgatgcc 1908



to top

>gb|AY108108.1| Zea mays PCO072542 mRNA sequence
          Length = 1591

 Score =  196 bits (99), Expect = 5e-47
 Identities = 219/259 (84%)
 Strand = Plus / Minus

                                                                        
Query: 208  taaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttgcccatca 267
            |||||||| |||| ||| ||||| | ||| |||||||||||||||||||||||||| || 
Sbjct: 1214 taaaagataaagtgagcctggtcttggttcagctggagggacatgaacccttgcccgtcg 1155

                                                                        
Query: 268  taaaagaactggagcttatcatcatttggctggtagactcccctccatgcttttgaaccg 327
            || |||||  ||||||| || |  ||||| ||| ||||||| |||||||| || ||||||
Sbjct: 1154 tagaagaatcggagcttgtccttgtttggatggaagactcctctccatgccttggaaccg 1095

                                                                        
Query: 328  cctccactagtgaagtattggattggactgtttctgctgctaatgtgttccaggcagtgg 387
            ||||| || ||||| || |||| |||||||| ||||||||||||||| ||||| ||||| 
Sbjct: 1094 cctccgctcgtgaaatactggagtggactgtctctgctgctaatgtgctccagacagtga 1035

                                                                        
Query: 388  tcatgcccattgatgtagaagtcgatgccgttaaccttgaggaccggaagaagcaattgc 447
            || || ||||||||||||||||||| ||| ||  |||||||||| ||||| || |||| |
Sbjct: 1034 tcgtgtccattgatgtagaagtcgacgccattgtccttgaggactggaagtagtaattcc 975

                               
Query: 448  aggagctcctcggtgtccc 466
            || ||||||||||||||||
Sbjct: 974  agaagctcctcggtgtccc 956



to top

>ref|NM_194612.1| Oryza sativa (japonica cultivar-group) putative purple acid
           phosphatase (OSJNBa0023I19.10), mRNA
          Length = 1008

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                       
Query: 247 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
           |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 878 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 819

                                                                       
Query: 307 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctg 366
           || |||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 818 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactgtttctgctg 759

                                                                       
Query: 367 ctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgttaaccttg 426
           || ||||| ||||||||||| |||||||||||||||||||| ||||  |||||  |||||
Sbjct: 758 ctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcgacaccgttttccttg 699

                                                        
Query: 427 aggaccggaagaagcaattgcaggagctcctcggtgtccccatgg 471
           ||||| ||||| || |  |  |||||||||| |||||| ||||||
Sbjct: 698 aggacaggaaggagaagctcaaggagctcctgggtgtctccatgg 654



to top

>dbj|AK110804.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E10, full
           insert sequence
          Length = 1195

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                       
Query: 247 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
           |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 885 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 826

                                                                       
Query: 307 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctg 366
           || |||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 825 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactgtttctgctg 766

                                                                       
Query: 367 ctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgccgttaaccttg 426
           || ||||| ||||||||||| |||||||||||||||||||| ||||  |||||  |||||
Sbjct: 765 ctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcgacaccgttttccttg 706

                                                        
Query: 427 aggaccggaagaagcaattgcaggagctcctcggtgtccccatgg 471
           ||||| ||||| || |  |  |||||||||| |||||| ||||||
Sbjct: 705 aggacaggaaggagaagctcaaggagctcctgggtgtctccatgg 661



to top

>gb|AY108047.1| Zea mays PCO103710 mRNA sequence
          Length = 1513

 Score =  157 bits (79), Expect = 4e-35
 Identities = 199/239 (83%)
 Strand = Plus / Minus

                                                                        
Query: 237  tagctggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttgg 296
            |||||||||||||||||| |||||||| || || ||||||| ||| | ||| ||  | ||
Sbjct: 1039 tagctggagggacatgaagccttgcccgtcgtagaagaacttgaggtcatcttcggtggg 980

                                                                        
Query: 297  ctggtagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggact 356
             |  |  ||||| |||||||| || ||||||||||| || |||||||| |||||||| ||
Sbjct: 979  gttctgcactcctctccatgccttggaaccgcctccgcttgtgaagtactggattgggct 920

                                                                        
Query: 357  gtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcgatgcc 416
            || ||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct: 919  gtctctgctgctgatgtgttccaggcagtggtcatgcccgttgatgtagaaatcgacgcc 860

                                                                       
Query: 417  gttaaccttgaggaccggaagaagcaattgcaggagctcctcggtgtccccatggtcac 475
            |||  ||| |||||| ||||| || |  ||||| ||||||| |||||| ||||| ||||
Sbjct: 859  gttggcctggaggactggaagcagtagctgcagtagctccttggtgtcaccatgatcac 801



to top

>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 355     ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcga 412
               |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1063495 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcga 1063438



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                           
Query: 247     gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
               |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 1063682 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063623

                                                                  
Query: 307     cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 357
               || |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 1063622 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063572



to top

>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 355   ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcga 412
             |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 60948 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcga 60891



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                         
Query: 247   gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
             |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 61135 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 61076

                                                                
Query: 307   cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 357
             || |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 61075 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 61025



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 355     ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcga 412
               |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1063495 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcga 1063438



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                           
Query: 247     gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
               |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 1063682 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063623

                                                                  
Query: 307     cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 357
               || |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 1063622 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063572



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 355     ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtagaagtcga 412
               |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1063492 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtagaaatcga 1063435



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                           
Query: 247     gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 306
               |||| ||||||||| |||||||| |||||||||||||| || || ||| | ||  | |  
Sbjct: 1063679 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063620

                                                                  
Query: 307     cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 357
               || |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct: 1063619 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063569



to top

>gb|AF236109.1|AF236109 Phaseolus vulgaris putative purple acid phosphatase (PAP) mRNA,
           complete cds
          Length = 996

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 311 tccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctgctaa 370
           ||||||| |||||||| || ||||| || ||| |||||||| | ||| || |||| || |
Sbjct: 805 tccatgcctttgaacctccaccactggttaagaattggatttggctgcttgtgctactta 746

                                             
Query: 371 tgtgttccaggcagtggtcatgcccattgatgta 404
           ||||||||| |||||||||||||||||| |||||
Sbjct: 745 tgtgttccaagcagtggtcatgcccattaatgta 712



to top

>gb|AC154757.2| Mus musculus BAC clone RP23-116J1 from chromosome 14, complete sequence
          Length = 202303

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 355   ctgtttctgctgctaatgtgttcca 379
             |||||| ||||||||||||||||||
Sbjct: 20173 ctgtttttgctgctaatgtgttcca 20149



to top

>gb|AF236107.1|AF236107 Ipomoea batatas putative purple acid phosphatase precursor (PAP)
           mRNA, complete cds
          Length = 939

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 247 gacatgaacccttgcccatcataaaagaa 275
           |||||||| |||||||||||||| |||||
Sbjct: 890 gacatgaatccttgcccatcatagaagaa 862



to top

>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete
             sequence
          Length = 73587

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cacattcaattttttcacaa 77
             ||||||||||||||||||||
Sbjct: 38746 cacattcaattttttcacaa 38727



to top

>gb|AY757038.1| Macrohasseltia macroterantha trnL-trnF intergenic spacer, partial
          sequence; chloroplast
          Length = 307

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 cattcaattttttcacaaat 79
          ||||||||||||||||||||
Sbjct: 60 cattcaattttttcacaaat 79



to top

>gb|AY756988.1| Azara salicifolia trnL-trnF intergenic spacer, partial sequence;
          chloroplast
          Length = 111

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 cattcaattttttcacaaat 79
          ||||||||||||||||||||
Sbjct: 63 cattcaattttttcacaaat 82



to top

>gb|AC003986.2| Homo sapiens BAC clone CTA-370M10 from 7, complete sequence
          Length = 188205

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    tgcatgtccctcattctgcagtga 136
              ||||||||||||||||||| ||||
Sbjct: 122569 tgcatgtccctcattctgctgtga 122546



to top

>emb|AJ318884.1|TTU318884 Triticum turgidum subsp. durum xip-II gene for putative xylanase
            inhibitor protein
          Length = 2143

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  gatgtagaagtcgatgccgt 418
            ||||||||||||||||||||
Sbjct: 1473 gatgtagaagtcgatgccgt 1454



to top

>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence
          Length = 222398

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ggaagaagcaattgcaggag 452
             ||||||||||||||||||||
Sbjct: 87512 ggaagaagcaattgcaggag 87493



to top

>gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, complete sequence
          Length = 127953

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    agtgacataaatggagggctggaa 155
              ||||||| ||||||||||||||||
Sbjct: 117361 agtgacagaaatggagggctggaa 117384



to top

>gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, complete sequence
          Length = 217151

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 198    agaaacatcataaaagatgaagtcagct 225
              ||||||| ||||||| ||||||||||||
Sbjct: 177012 agaaacaacataaaacatgaagtcagct 177039



to top

>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence
          Length = 212484

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ggaagaagcaattgcaggag 452
              ||||||||||||||||||||
Sbjct: 160914 ggaagaagcaattgcaggag 160895



to top

>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence
          Length = 186751

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    ttctgctgctaatgtgttcc 378
              ||||||||||||||||||||
Sbjct: 159102 ttctgctgctaatgtgttcc 159083



to top

>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
              sequence
          Length = 190267

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    gggctggaagtggtttgttt 166
              ||||||||||||||||||||
Sbjct: 137014 gggctggaagtggtttgttt 136995



to top

>emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in linkage group 22,
              complete sequence
          Length = 209223

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    atggagggctggaagtggtt 161
              ||||||||||||||||||||
Sbjct: 125635 atggagggctggaagtggtt 125616



to top

>emb|CT823560.2| Human DNA sequence from clone XX-HCC1954_31G13, complete sequence
          Length = 134950

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ttctgctgctaatgtgttcc 378
             ||||||||||||||||||||
Sbjct: 83657 ttctgctgctaatgtgttcc 83638



to top

>gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complete sequence
          Length = 210223

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 198  agaaacatcataaaagatgaagtcagct 225
            ||||||| ||||||| ||||||||||||
Sbjct: 9356 agaaacaacataaaacatgaagtcagct 9383



to top

>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8
          Length = 159490

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ttctgctgctaatgtgttcc 378
             ||||||||||||||||||||
Sbjct: 35833 ttctgctgctaatgtgttcc 35814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,274,586
Number of Sequences: 3902068
Number of extensions: 4274586
Number of successful extensions: 83728
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83552
Number of HSP's gapped (non-prelim): 176
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top