ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18g13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 geno... 101 1e-18
2ref|XM_469455.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-18
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 1e-18
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
5dbj|AK065804.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
6gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, p... 92 1e-15
7gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome... 44 0.30
8gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosom... 44 0.30
9gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosom... 44 0.30
10gb|AC101931.8| Mus musculus chromosome 1, clone RP24-63O23, comp... 44 0.30
11gb|AC087871.9| Genomic sequence for Mus musculus, clone RP23-334... 42 1.2
12gb|AC127361.4| Mus musculus BAC clone RP23-125M8 from chromosome... 40 4.6
13gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome... 40 4.6
14gb|AC009930.7| Homo sapiens chromosome 8, clone RP11-114O8, comp... 40 4.6
15emb|CR338865.2| Gallus gallus finished cDNA, clone ChEST1020f23 40 4.6
16gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, com... 40 4.6
17gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosom... 40 4.6 
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete
              sequence
          Length = 139074

 Score =  101 bits (51), Expect = 1e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                          
Query: 250    cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 308
              ||||||||||||||||||||||||||||  || |||||||||||||||| | |||||| |
Sbjct: 109136 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 109195

                                                     
Query: 309    gaagttgtccgaaaatgtcagggcagccttcccagctgc 347
              ||| ||||||||| || || || ||||||||||||||||
Sbjct: 109196 gaacttgtccgaagatatctggacagccttcccagctgc 109234
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>ref|XM_469455.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2735

 Score =  101 bits (51), Expect = 1e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 250  cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 308
            ||||||||||||||||||||||||||||  || |||||||||||||||| | |||||| |
Sbjct: 2467 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 2408

                                                   
Query: 309  gaagttgtccgaaaatgtcagggcagccttcccagctgc 347
            ||| ||||||||| || || || ||||||||||||||||
Sbjct: 2407 gaacttgtccgaagatatctggacagccttcccagctgc 2369
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 1e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 250      cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 308
                ||||||||||||||||||||||||||||  || |||||||||||||||| | |||||| |
Sbjct: 28043971 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 28043912

                                                       
Query: 309      gaagttgtccgaaaatgtcagggcagccttcccagctgc 347
                ||| ||||||||| || || || ||||||||||||||||
Sbjct: 28043911 gaacttgtccgaagatatctggacagccttcccagctgc 28043873
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 1e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 250      cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 308
                ||||||||||||||||||||||||||||  || |||||||||||||||| | |||||| |
Sbjct: 28135295 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 28135236

                                                       
Query: 309      gaagttgtccgaaaatgtcagggcagccttcccagctgc 347
                ||| ||||||||| || || || ||||||||||||||||
Sbjct: 28135235 gaacttgtccgaagatatctggacagccttcccagctgc 28135197
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>dbj|AK065804.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037L05, full
            insert sequence
          Length = 2353

 Score =  101 bits (51), Expect = 1e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 250  cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 308
            ||||||||||||||||||||||||||||  || |||||||||||||||| | |||||| |
Sbjct: 2085 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 2026

                                                   
Query: 309  gaagttgtccgaaaatgtcagggcagccttcccagctgc 347
            ||| ||||||||| || || || ||||||||||||||||
Sbjct: 2025 gaacttgtccgaagatatctggacagccttcccagctgc 1987
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>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds;
             glycyl-tRNA synthetase (Z195D10.2), ornithine
             carbamoyltransferase (Z195D10.3), putative gag protein
             (Z195D10.5), putative SET-domain transcriptional regulator
             (Z195D10.7), putative oxysterol-binding protein
             (Z195D10.8), putative polyprotein (Z195D10.9), putative
             oxysterol-binding protein (Z195D10.10), putative gag-pol
             polyprotein (Z195D10.11), putative
             phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12),
             hypothetical protein (Z195D10.15), putative gag-pol
             polyprotein (Z195D10.16), putative polyprotein
             (Z195D10.17), putative retrotransposon protein
             (Z195D10.18), and prpol (Z195D10.19) genes, complete cds;
             and putative teosinte branched2 (Z195D10.20) gene, partial
             cds
          Length = 141939

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 251   agagaaccagaagacctgtaacctacttgaacctagtcagttatcattagatcgtttgga 310
             ||||||||| ||||||| |||||||||  ||||||||||| |||||| |||||||| || 
Sbjct: 63865 agagaaccaaaagacctataacctactcaaacctagtcagctatcatcagatcgttaggg 63806

                                                   
Query: 311   agttgtccgaaaatgtcagggcagccttcccagctgct 348
               ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 63805 tcttgcccgaagatgtcggggcagccttcccagctgct 63768
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>gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome 14, complete sequence
          Length = 223142

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 235   attccaaaagaagaacagagaa 256
             ||||||||||||||||||||||
Sbjct: 67515 attccaaaagaagaacagagaa 67536
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>gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosome 14, complete sequence
          Length = 186860

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 235    attccaaaagaagaacagagaa 256
              ||||||||||||||||||||||
Sbjct: 160217 attccaaaagaagaacagagaa 160238
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>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence
          Length = 179032

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 235    attccaaaagaagaacagagaa 256
              ||||||||||||||||||||||
Sbjct: 121756 attccaaaagaagaacagagaa 121735
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>gb|AC101931.8| Mus musculus chromosome 1, clone RP24-63O23, complete sequence
          Length = 209705

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 235   attccaaaagaagaacagagaa 256
             ||||||||||||||||||||||
Sbjct: 63050 attccaaaagaagaacagagaa 63071
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>gb|AC087871.9| Genomic sequence for Mus musculus, clone RP23-334N23, complete sequence
          Length = 117000

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   tctagtataaaccactaaaaa 222
             |||||||||||||||||||||
Sbjct: 50376 tctagtataaaccactaaaaa 50396
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>gb|AC127361.4| Mus musculus BAC clone RP23-125M8 from chromosome 17, complete sequence
          Length = 201331

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    attccaaaagaagaacagag 254
              ||||||||||||||||||||
Sbjct: 155743 attccaaaagaagaacagag 155762
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>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence
          Length = 191050

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   attccaaaagaagaacagag 254
             ||||||||||||||||||||
Sbjct: 68557 attccaaaagaagaacagag 68576
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>gb|AC009930.7| Homo sapiens chromosome 8, clone RP11-114O8, complete sequence
          Length = 165662

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   attccaaaagaagaacagag 254
             ||||||||||||||||||||
Sbjct: 83042 attccaaaagaagaacagag 83023
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>emb|CR338865.2| Gallus gallus finished cDNA, clone ChEST1020f23
          Length = 893

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  acacaaatggcctatataac 51
           ||||||||||||||||||||
Sbjct: 281 acacaaatggcctatataac 300
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>gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, complete sequence
          Length = 200292

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  attccaaaagaagaacagag 254
            ||||||||||||||||||||
Sbjct: 4786 attccaaaagaagaacagag 4767
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>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence
          Length = 195034

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    attccaaaagaagaacagag 254
              ||||||||||||||||||||
Sbjct: 103656 attccaaaagaagaacagag 103637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,581,651
Number of Sequences: 3902068
Number of extensions: 2581651
Number of successful extensions: 41572
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41506
Number of HSP's gapped (non-prelim): 61
length of query: 348
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 326
effective length of database: 17,147,199,772
effective search space: 5589987125672
effective search space used: 5589987125672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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