ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TES_PIG (Q2QLE3) Testin 31 2.7
2FOLR2_MOUSE (Q05685) Folate receptor beta precursor (FR-beta) (F... 31 3.5
3TES_CALMO (Q2QLC3) Testin 30 6.0
4TES_PANTR (Q2QLF4) Testin 30 7.9
5TES_HUMAN (Q9UGI8) Testin (TESS) 30 7.9
6LCK_SAISC (Q95KR7) Proto-oncogene tyrosine-protein kinase LCK (E... 30 7.9

>TES_PIG (Q2QLE3) Testin|
          Length = 421

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 262 HPPTMLISEAHEMVHNPQSHWKKSPDDQIPASASPQFDDNLPFGYHHCGSHKP*CSSLDQ 441
           HP   + S  HE++ +    WK               +D L  G H+C S KP C+  D+
Sbjct: 262 HPACFVCSTCHELLVDMIYFWK---------------NDKLYCGRHYCDSEKPRCAGCDE 306



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>FOLR2_MOUSE (Q05685) Folate receptor beta precursor (FR-beta) (Folate receptor|
           2) (Folate-binding protein 2)
          Length = 251

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = +1

Query: 238 TGWGR-RTDHPPTMLISEAH-------EMVHNPQSHWKKSPDDQIPASAS-PQFDDNLPF 390
           TG GR RTD     + ++ H       + +H+  S WKK+    +  S    + D  L F
Sbjct: 17  TGSGRDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCSVNTSQELHKADSRLYF 76

Query: 391 GYHHCGSHKP*CSS 432
            + HCG  +P C S
Sbjct: 77  NWDHCGKMEPACKS 90



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>TES_CALMO (Q2QLC3) Testin|
          Length = 421

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 262 HPPTMLISEAHEMVHNPQSHWKKSPDDQIPASASPQFDDNLPFGYHHCGSHKP*CSSLDQ 441
           HP   L S  HE++ +    WK               ++ L  G H+C S KP C+  D+
Sbjct: 262 HPACFLCSICHELLVDMIYFWK---------------NEKLYCGRHYCDSEKPRCAGCDE 306



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>TES_PANTR (Q2QLF4) Testin|
          Length = 421

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 262 HPPTMLISEAHEMVHNPQSHWKKSPDDQIPASASPQFDDNLPFGYHHCGSHKP*CSSLDQ 441
           HP   + S  HE++ +    WK               ++ L  G H+C S KP C+  D+
Sbjct: 262 HPACFVCSTCHELLVDMIYFWK---------------NEKLYCGRHYCDSEKPRCAGCDE 306



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>TES_HUMAN (Q9UGI8) Testin (TESS)|
          Length = 421

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 262 HPPTMLISEAHEMVHNPQSHWKKSPDDQIPASASPQFDDNLPFGYHHCGSHKP*CSSLDQ 441
           HP   + S  HE++ +    WK               ++ L  G H+C S KP C+  D+
Sbjct: 262 HPACFVCSTCHELLVDMIYFWK---------------NEKLYCGRHYCDSEKPRCAGCDE 306



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>LCK_SAISC (Q95KR7) Proto-oncogene tyrosine-protein kinase LCK (EC 2.7.10.2)|
           (p56-LCK) (Lymphocyte cell-specific protein-tyrosine
           kinase)
          Length = 508

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 415 YESHSDGSQ--KEGYHQTEVTQKPVFDHQDSFSNDSEGYAPSHVPQRSTSLEDDPFSYPN 242
           YE   DG    ++G H   + Q   +    S +   EG+ P +   ++ SLE +P+ + N
Sbjct: 71  YEPSHDGDLGFEKGEHLRILEQNGEWWKAQSLTTGQEGFVPFNFVAKANSLEPEPWFFKN 130

Query: 241 L 239
           L
Sbjct: 131 L 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,450,516
Number of Sequences: 219361
Number of extensions: 1650473
Number of successful extensions: 5011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5004
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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