ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18f19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480332.1| Oryza sativa (japonica cultivar-group), mRNA 139 1e-29
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
3dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
4dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
5dbj|AK119224.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
6dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
7gb|AY104573.1| Zea mays PCO144645 mRNA sequence 100 1e-17
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.56
9gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genom... 44 0.56
10gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Can... 44 0.56
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
12gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Canc... 44 0.56
13emb|CR974475.12| Zebrafish DNA sequence from clone CH73-27E22 in... 44 0.56
14gb|AC146894.4| X. tropicalis BAC clone containing gene for egr, ... 42 2.2
15ref|XM_783132.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.2
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Can... 42 2.2
18gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 2.2
19dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map nea... 42 2.2
21ref|XM_362692.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.7
22ref|XM_611658.2| PREDICTED: Bos taurus similar to AP2 associated... 40 8.7
23gb|BC050887.1| Mus musculus solute carrier family 25 (mitochondr... 40 8.7
24gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 40 8.7
25gb|AC102547.8| Mus musculus chromosome 7, clone RP23-134L4, comp... 40 8.7
26gb|AC121804.3| Mus musculus BAC clone RP23-442I5 from chromosome... 40 8.7
27emb|AL109956.19|HSBG98H19 Human DNA sequence from clone GS1-98H1... 40 8.7
28gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, com... 40 8.7
29gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, c... 40 8.7
30gb|AF390547.1| Mus musculus cystin cilia-associated protein gene... 40 8.7
31gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, com... 40 8.7
32gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Can... 40 8.7
33gb|AC020703.7| Homo sapiens BAC clone RP11-259G7 from 4, complet... 40 8.7
34dbj|AK158985.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 8.7
35ref|NG_002716.1| Homo sapiens calmodulin 2 pseudogene 1 (CALM2P1... 40 8.7
36dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
37gb|AC158224.6| Mus musculus chromosome 7, clone RP23-103H3, comp... 40 8.7
38gb|AC131340.4| Mus musculus BAC clone RP23-472G22 from chromosom... 40 8.7
39gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome... 40 8.7
40gb|AY106377.1| Zea mays PCO111367 mRNA sequence 40 8.7
41gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromos... 40 8.7
42gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, com... 40 8.7
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
44gb|AC005242.1|AC005242 Homo sapiens chromosome 17, clone hRPK.11... 40 8.7
45emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561... 40 8.7
46gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, comple... 40 8.7
47emb|X13907.1|HSCALP Human calmodulin pseudogene 40 8.7 
>ref|XM_480332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2091

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 220  ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
            ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 1796 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 1737

                                                                        
Query: 277  ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
              || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 1736 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 1677

                                                                        
Query: 337  gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
            | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 1676 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 1617

                                                                        
Query: 397  catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
              ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 1616 tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 1557

                                                                        
Query: 457  caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
            ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 1556 caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 1497

                        
Query: 517  gcgcagctgaaa 528
            | ||||| ||||
Sbjct: 1496 gggcagcagaaa 1485



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   gtatcaacttagcatacacagaat 113
            ||||||||| ||||||||||||||
Sbjct: 1921 gtatcaactcagcatacacagaat 1898
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Plus

                                                                           
Query: 220     ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
               ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 4379721 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 4379780

                                                                           
Query: 277     ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
                 || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 4379781 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 4379840

                                                                           
Query: 337     gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
               | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 4379841 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 4379900

                                                                           
Query: 397     catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
                 ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 4379901 tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 4379960

                                                                           
Query: 457     caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
               ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 4379961 caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 4380020

                           
Query: 517     gcgcagctgaaa 528
               | ||||| ||||
Sbjct: 4380021 gggcagcagaaa 4380032



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      gtatcaacttagcatacacagaat 113
               ||||||||| ||||||||||||||
Sbjct: 4379596 gtatcaactcagcatacacagaat 4379619
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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0054L03
          Length = 183623

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Plus

                                                                          
Query: 220    ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
              ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 142515 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 142574

                                                                          
Query: 277    ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
                || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 142575 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 142634

                                                                          
Query: 337    gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
              | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 142635 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 142694

                                                                          
Query: 397    catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
                ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 142695 tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 142754

                                                                          
Query: 457    caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
              ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 142755 caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 142814

                          
Query: 517    gcgcagctgaaa 528
              | ||||| ||||
Sbjct: 142815 gggcagcagaaa 142826



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     gtatcaacttagcatacacagaat 113
              ||||||||| ||||||||||||||
Sbjct: 142390 gtatcaactcagcatacacagaat 142413
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>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Plus

                                                                         
Query: 220   ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
             ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 26897 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 26956

                                                                         
Query: 277   ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
               || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 26957 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 27016

                                                                         
Query: 337   gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
             | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 27017 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 27076

                                                                         
Query: 397   catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
               ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 27077 tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 27136

                                                                         
Query: 457   caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
             ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 27137 caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 27196

                         
Query: 517   gcgcagctgaaa 528
             | ||||| ||||
Sbjct: 27197 gggcagcagaaa 27208



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    gtatcaacttagcatacacagaat 113
             ||||||||| ||||||||||||||
Sbjct: 26772 gtatcaactcagcatacacagaat 26795
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>dbj|AK119224.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G08, full
            insert sequence
          Length = 1463

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 220  ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
            ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 1167 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 1108

                                                                        
Query: 277  ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
              || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 1107 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 1048

                                                                        
Query: 337  gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
            | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 1047 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 988

                                                                        
Query: 397  catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
              ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 987  tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 928

                                                                        
Query: 457  caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
            ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 927  caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 868

                        
Query: 517  gcgcagctgaaa 528
            | ||||| ||||
Sbjct: 867  gggcagcagaaa 856



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   gtatcaacttagcatacacagaat 113
            ||||||||| ||||||||||||||
Sbjct: 1292 gtatcaactcagcatacacagaat 1269
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>dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075K04, full
            insert sequence
          Length = 2090

 Score =  139 bits (70), Expect = 1e-29
 Identities = 252/312 (80%), Gaps = 3/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 220  ctcaaggcttcgacgagaacaggttggggtaggagaa---cggatcatcctccaacgatg 276
            ||||||| || ||||||||||| ||||| ||||||||   |||||||||||||| | |||
Sbjct: 1795 ctcaaggttttgacgagaacagattgggataggagaaatacggatcatcctccatcaatg 1736

                                                                        
Query: 277  ttgatctctgaggcacatgagatggtgcataaccctcagagtcattggaaaaagagtcct 336
              || ||||| |||| |||||| ||  |||||||||  | |||| ||||||| || || |
Sbjct: 1735 gcgacctctggggcaaatgagaaggcacataaccctgtgtgtcactggaaaaggaatctt 1676

                                                                        
Query: 337  gatgatcaaataccggcttctgcgtcacctcagtttgatgataaccttccttttggctac 396
            | ||||||||||| || ||||| ||||| || | |||| |||  | ||||||| ||  ||
Sbjct: 1675 ggtgatcaaatactggtttctgtgtcacttcggattgaggatggctttcctttcggacac 1616

                                                                        
Query: 397  catcactgtggctctcataaaccctagtgttcttctttagatcagcaatgcacagtttcg 456
              ||||||| | |||||||| || || | |||||||| ||||| || |||| |||||  |
Sbjct: 1615 tgtcactgtagttctcataagccttactattcttcttcagatctgcgatgcgcagttgtg 1556

                                                                        
Query: 457  caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
            ||||||||||||||||||| ||||| |||||||||||||||||||  || |||||||| |
Sbjct: 1555 caaggtttgcagcagcacgggctgctgatgcagctcgctctgctgtttcggcagctgtct 1496

                        
Query: 517  gcgcagctgaaa 528
            | ||||| ||||
Sbjct: 1495 gggcagcagaaa 1484



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   gtatcaacttagcatacacagaat 113
            ||||||||| ||||||||||||||
Sbjct: 1920 gtatcaactcagcatacacagaat 1897
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>gb|AY104573.1| Zea mays PCO144645 mRNA sequence
          Length = 1433

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Minus

                                                                        
Query: 457  caaggtttgcagcagcacgtgctgccgatgcagctcgctctgctgagtcagcagctgttt 516
            ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 1433 caaggtttgcagcagcacgggctgctgatgcagctcgctcagctgattcagcagctgtct 1374

                                                          
Query: 517  gcgcagctgaaaccacgtcatccatatcaatattttccctactctc 562
            ||||||| || |  ||||| ||||  ||||||||| ||| ||||||
Sbjct: 1373 gcgcagcagataaaacgtcgtccaagtcaatatttgccccactctc 1328
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 263      atcctccaacgatgttgatctc 284
                ||||||||||||||||||||||
Sbjct: 17905488 atcctccaacgatgttgatctc 17905509
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>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete
              sequence
          Length = 142896

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 263    atcctccaacgatgttgatctc 284
              ||||||||||||||||||||||
Sbjct: 116804 atcctccaacgatgttgatctc 116783
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>gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 233155

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 37   ataaattataaacaaagaaagc 58
            ||||||||||||||||||||||
Sbjct: 2305 ataaattataaacaaagaaagc 2326
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 263      atcctccaacgatgttgatctc 284
                ||||||||||||||||||||||
Sbjct: 17899029 atcctccaacgatgttgatctc 17899050
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>gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172497

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 37     ataaattataaacaaagaaagc 58
              ||||||||||||||||||||||
Sbjct: 168600 ataaattataaacaaagaaagc 168621
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>emb|CR974475.12| Zebrafish DNA sequence from clone CH73-27E22 in linkage group 22,
             complete sequence
          Length = 126320

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    acataaattataaacaaagaaa 56
             ||||||||||||||||||||||
Sbjct: 32439 acataaattataaacaaagaaa 32460
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>gb|AC146894.4| X. tropicalis BAC clone containing gene for egr, complete sequence
          Length = 96960

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   acatggggtaccaaacaaggc 154
             |||||||||||||||||||||
Sbjct: 42570 acatggggtaccaaacaaggc 42550
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>ref|XM_783132.1| PREDICTED: Strongylocentrotus purpuratus similar to lin-9 homolog
           (LOC583212), mRNA
          Length = 725

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 426 ttcttctttagatcagcaatg 446
           |||||||||||||||||||||
Sbjct: 601 ttcttctttagatcagcaatg 581
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 12       caacatccacgcatttacaat 32
                |||||||||||||||||||||
Sbjct: 29778943 caacatccacgcatttacaat 29778923
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>gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 161533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   tagtgttcttctttagatcag 441
             |||||||||||||||||||||
Sbjct: 88821 tagtgttcttctttagatcag 88801
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>gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-168o8, complete
             sequence
          Length = 200124

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   tagtgttcttctttagatcag 441
             |||||||||||||||||||||
Sbjct: 28376 tagtgttcttctttagatcag 28356
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>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_F03
          Length = 110783

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    caacatccacgcatttacaat 32
             |||||||||||||||||||||
Sbjct: 77073 caacatccacgcatttacaat 77053
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>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
          Length = 110684

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 545   aatattttccctactctctat 565
             |||||||||||||||||||||
Sbjct: 99770 aatattttccctactctctat 99750
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>ref|XM_362692.1| Magnaporthe grisea 70-15 hypothetical protein (MG08356.4) partial
            mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  agcagctgtttgcgcagctg 525
            ||||||||||||||||||||
Sbjct: 1383 agcagctgtttgcgcagctg 1364
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>ref|XM_611658.2| PREDICTED: Bos taurus similar to AP2 associated kinase 1 (LOC532546),
            mRNA
          Length = 2924

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ctgctgagtcagcagctgtt 515
            ||||||||||||||||||||
Sbjct: 2027 ctgctgagtcagcagctgtt 2008
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>gb|BC050887.1| Mus musculus solute carrier family 25 (mitochondrial carrier,
           glutamate), member 22, mRNA (cDNA clone IMAGE:5708744),
           complete cds
          Length = 3281

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 ctgctgagtcagcagctgtt 515
           ||||||||||||||||||||
Sbjct: 908 ctgctgagtcagcagctgtt 927
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>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   tgttcttctttagatcagca 443
             ||||||||||||||||||||
Sbjct: 93418 tgttcttctttagatcagca 93437
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>gb|AC102547.8| Mus musculus chromosome 7, clone RP23-134L4, complete sequence
          Length = 220452

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   ctgctgagtcagcagctgtt 515
             ||||||||||||||||||||
Sbjct: 42293 ctgctgagtcagcagctgtt 42312
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>gb|AC121804.3| Mus musculus BAC clone RP23-442I5 from chromosome 12, complete sequence
          Length = 199938

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   tgcacctgttctggatgctt 598
             ||||||||||||||||||||
Sbjct: 13101 tgcacctgttctggatgctt 13120
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>emb|AL109956.19|HSBG98H19 Human DNA sequence from clone GS1-98H19 on chromosome 1q25.3-31.2
             Contains part of the C1orf24 gene for chromosome 1 open
             reading frame 24, complete sequence
          Length = 84574

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tttttctgtatcaacttagc 102
             ||||||||||||||||||||
Sbjct: 32880 tttttctgtatcaacttagc 32899
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>gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   ttctccaagaaatacccaaa 132
             ||||||||||||||||||||
Sbjct: 41395 ttctccaagaaatacccaaa 41414
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>gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, complete sequence
          Length = 167843

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    gacgagaacaggttggggtaggag 254
              |||||||||||||| |||||||||
Sbjct: 151136 gacgagaacaggtttgggtaggag 151159
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>gb|AF390547.1| Mus musculus cystin cilia-associated protein gene, complete cds
          Length = 110391

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 579    tgcacctgttctggatgctt 598
              ||||||||||||||||||||
Sbjct: 107276 tgcacctgttctggatgctt 107295
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>gb|AC103833.2| Homo sapiens chromosome 8, clone RP11-1057N3, complete sequence
          Length = 204508

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 539    catatcaatattttccctactctc 562
              |||||||||||||| |||||||||
Sbjct: 146265 catatcaatattttgcctactctc 146288
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>gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75385

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    caattcacataaattataaa 48
             ||||||||||||||||||||
Sbjct: 35389 caattcacataaattataaa 35408
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>gb|AC020703.7| Homo sapiens BAC clone RP11-259G7 from 4, complete sequence
          Length = 201105

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    acacagaattctccaagaaa 124
              ||||||||||||||||||||
Sbjct: 159989 acacagaattctccaagaaa 160008
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>dbj|AK158985.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530024H12 product:unclassifiable, full insert
            sequence
          Length = 5591

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  ctgctgagtcagcagctgtt 515
            ||||||||||||||||||||
Sbjct: 2882 ctgctgagtcagcagctgtt 2901
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>ref|NG_002716.1| Homo sapiens calmodulin 2 pseudogene 1 (CALM2P1) on chromosome 17
          Length = 518

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  ataaattataaacaaagaaa 56
           ||||||||||||||||||||
Sbjct: 493 ataaattataaacaaagaaa 474
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 437     atcagcaatgcacagtttcgcaag 460
               |||||||||||||||||| |||||
Sbjct: 4960077 atcagcaatgcacagttttgcaag 4960054
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>gb|AC158224.6| Mus musculus chromosome 7, clone RP23-103H3, complete sequence
          Length = 224545

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   ctgctgagtcagcagctgtt 515
             ||||||||||||||||||||
Sbjct: 81690 ctgctgagtcagcagctgtt 81671
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>gb|AC131340.4| Mus musculus BAC clone RP23-472G22 from chromosome 6, complete sequence
          Length = 194040

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ataaattataaacaaagaaa 56
             ||||||||||||||||||||
Sbjct: 77395 ataaattataaacaaagaaa 77414
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>gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome 12, complete sequence
          Length = 179484

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 579    tgcacctgttctggatgctt 598
              ||||||||||||||||||||
Sbjct: 139768 tgcacctgttctggatgctt 139787
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>gb|AY106377.1| Zea mays PCO111367 mRNA sequence
          Length = 1086

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 448 acagtttcgcaaggtttgcagcag 471
           ||||||||||||||||| ||||||
Sbjct: 944 acagtttcgcaaggtttccagcag 921
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>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete
              sequence
          Length = 203278

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tattttccctactctctata 566
              ||||||||||||||||||||
Sbjct: 127121 tattttccctactctctata 127102
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>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence
          Length = 231380

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    tgttcttctttagatcagca 443
              ||||||||||||||||||||
Sbjct: 220664 tgttcttctttagatcagca 220645
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 437     atcagcaatgcacagtttcgcaag 460
               |||||||||||||||||| |||||
Sbjct: 4960059 atcagcaatgcacagttttgcaag 4960036
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>gb|AC005242.1|AC005242 Homo sapiens chromosome 17, clone hRPK.118_F_13, complete sequence
          Length = 160262

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ataaattataaacaaagaaa 56
             ||||||||||||||||||||
Sbjct: 95819 ataaattataaacaaagaaa 95800
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>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 91053

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 437  atcagcaatgcacagtttcgcaag 460
            |||||||||||||||||| |||||
Sbjct: 3451 atcagcaatgcacagttttgcaag 3428
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>gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, complete sequence
          Length = 201846

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    ttctgtatcaacttagcatacaca 109
             |||||||| |||||||||||||||
Sbjct: 68338 ttctgtataaacttagcatacaca 68361
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>emb|X13907.1|HSCALP Human calmodulin pseudogene
          Length = 1099

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  ataaattataaacaaagaaa 56
           ||||||||||||||||||||
Sbjct: 493 ataaattataaacaaagaaa 474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,220,769
Number of Sequences: 3902068
Number of extensions: 6220769
Number of successful extensions: 117673
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117415
Number of HSP's gapped (non-prelim): 246
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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