ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
2dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
3dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
4dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
5ref|NM_190005.1| Oryza sativa (japonica cultivar-group), predic... 252 1e-63
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
7dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
8dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
9gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome... 78 4e-11
10gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome... 78 4e-11
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
12gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, com... 42 2.2
13gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 2.2
14gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, co... 42 2.2
15gb|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416... 42 2.2
16gb|AC016710.7| Homo sapiens BAC clone RP11-241E11 from 2, comple... 42 2.2
17dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.2
18emb|BX088535.6| Zebrafish DNA sequence from clone DKEY-18F5 in l... 42 2.2
19emb|AL807786.6| Mouse DNA sequence from clone RP23-320I1 on chro... 42 2.2
20emb|AL645968.6| Mouse DNA sequence from clone DN-25M4 on chromos... 42 2.2
21dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.2
22ref|XM_515113.1| PREDICTED: Pan troglodytes similar to FLJ00017 ... 40 8.5
23ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4... 40 8.5
24gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosom... 40 8.5
25gb|AC125043.4| Mus musculus BAC clone RP23-342M4 from chromosome... 40 8.5
26gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosom... 40 8.5
27gb|AF106577.2| Caenorhabditis elegans cosmid F46F5, complete seq... 40 8.5
28emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 40 8.5
29emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on ch... 40 8.5
30gb|CP000088.1| Thermobifida fusca YX, complete genome 40 8.5
31emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 8.5
32emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 8.5
33emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 8.5
34emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chro... 40 8.5
35gb|AF454964.1| Rattus norvegicus prostaglandin E2 receptor type ... 40 8.5
36gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21... 40 8.5
37gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 8.5
38gb|AC159003.2| Mus musculus BAC clone RP23-190L16 from chromosom... 40 8.5
39gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence 40 8.5
40emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43... 40 8.5
41emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in... 40 8.5
42gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 8.5 
>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full
           insert sequence
          Length = 967

 Score =  408 bits (206), Expect = e-111
 Identities = 338/382 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 561

                                                                       
Query: 285 ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
           || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 560 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 501

                                                                       
Query: 345 ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
           |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 500 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 441

                                                                       
Query: 405 gatagccgccccaatgtaaaggtactcccccggcacatcgaaagccatgccgaggatgac 464
            |  || || || ||||| |||||||||||||| |||| ||| |||||||| ||||||| 
Sbjct: 440 cactgctgcgccgatgtagaggtactcccccggaacattgaaggccatgccaaggatgat 381

                                                                       
Query: 465 cgcggggggaaatgaccaggagatgagcgcttggaaaccctgaggaggctcagcttcttg 524
            || || |||||  |||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 380 tgcaggaggaaacaaccaggagatcagtgcttggaagccctgaggaggttcagcttcttg 321

                                                                       
Query: 525 gtaccactcggagacatcctcccagaagcccttcttttcttggccttcatcataggtgtg 584
           ||||||||| |||||||||||||| ||||||||||| ||||||  ||||| ||| |||||
Sbjct: 320 gtaccactcagagacatcctcccaaaagcccttcttatcttgggtttcattatatgtgtg 261

                                 
Query: 585 gtggccgtcatacactccatac 606
           ||| || |||||||||||||||
Sbjct: 260 gtgaccatcatacactccatac 239
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>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full
           insert sequence
          Length = 1092

 Score =  408 bits (206), Expect = e-111
 Identities = 338/382 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 645

                                                                       
Query: 285 ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
           || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 644 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 585

                                                                       
Query: 345 ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
           |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 584 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 525

                                                                       
Query: 405 gatagccgccccaatgtaaaggtactcccccggcacatcgaaagccatgccgaggatgac 464
            |  || || || ||||| |||||||||||||| |||| ||| |||||||| ||||||| 
Sbjct: 524 cactgctgcgccgatgtagaggtactcccccggaacattgaaggccatgccaaggatgat 465

                                                                       
Query: 465 cgcggggggaaatgaccaggagatgagcgcttggaaaccctgaggaggctcagcttcttg 524
            || || |||||  |||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 464 tgcaggaggaaacaaccaggagatcagtgcttggaagccctgaggaggttcagcttcttg 405

                                                                       
Query: 525 gtaccactcggagacatcctcccagaagcccttcttttcttggccttcatcataggtgtg 584
           ||||||||| |||||||||||||| ||||||||||| ||||||  ||||| ||| |||||
Sbjct: 404 gtaccactcagagacatcctcccaaaagcccttcttatcttgggtttcattatatgtgtg 345

                                 
Query: 585 gtggccgtcatacactccatac 606
           ||| || |||||||||||||||
Sbjct: 344 gtgaccatcatacactccatac 323
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>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full
           insert sequence
          Length = 1077

 Score =  408 bits (206), Expect = e-111
 Identities = 338/382 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 652

                                                                       
Query: 285 ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
           || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 651 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 592

                                                                       
Query: 345 ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
           |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 591 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 532

                                                                       
Query: 405 gatagccgccccaatgtaaaggtactcccccggcacatcgaaagccatgccgaggatgac 464
            |  || || || ||||| |||||||||||||| |||| ||| |||||||| ||||||| 
Sbjct: 531 cactgctgcgccgatgtagaggtactcccccggaacattgaaggccatgccaaggatgat 472

                                                                       
Query: 465 cgcggggggaaatgaccaggagatgagcgcttggaaaccctgaggaggctcagcttcttg 524
            || || |||||  |||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 471 tgcaggaggaaacaaccaggagatcagtgcttggaagccctgaggaggttcagcttcttg 412

                                                                       
Query: 525 gtaccactcggagacatcctcccagaagcccttcttttcttggccttcatcataggtgtg 584
           ||||||||| |||||||||||||| ||||||||||| ||||||  ||||| ||| |||||
Sbjct: 411 gtaccactcagagacatcctcccaaaagcccttcttatcttgggtttcattatatgtgtg 352

                                 
Query: 585 gtggccgtcatacactccatac 606
           ||| || |||||||||||||||
Sbjct: 351 gtgaccatcatacactccatac 330
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>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full
           insert sequence
          Length = 876

 Score =  408 bits (206), Expect = e-111
 Identities = 338/382 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 652

                                                                       
Query: 285 ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
           || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 651 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 592

                                                                       
Query: 345 ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
           |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 591 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 532

                                                                       
Query: 405 gatagccgccccaatgtaaaggtactcccccggcacatcgaaagccatgccgaggatgac 464
            |  || || || ||||| |||||||||||||| |||| ||| |||||||| ||||||| 
Sbjct: 531 cactgctgcgccgatgtagaggtactcccccggaacattgaaggccatgccaaggatgat 472

                                                                       
Query: 465 cgcggggggaaatgaccaggagatgagcgcttggaaaccctgaggaggctcagcttcttg 524
            || || |||||  |||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 471 tgcaggaggaaacaaccaggagatcagtgcttggaagccctgaggaggttcagcttcttg 412

                                                                       
Query: 525 gtaccactcggagacatcctcccagaagcccttcttttcttggccttcatcataggtgtg 584
           ||||||||| |||||||||||||| ||||||||||| ||||||  ||||| ||| |||||
Sbjct: 411 gtaccactcagagacatcctcccaaaagcccttcttatcttgggtttcattatatgtgtg 352

                                 
Query: 585 gtggccgtcatacactccatac 606
           ||| || |||||||||||||||
Sbjct: 351 gtgaccatcatacactccatac 330
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>ref|NM_190005.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Minus

                                                                        
Query: 225  tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 2050

                                                                        
Query: 285  ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
            || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 2049 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 1990

                                                                        
Query: 345  ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
            |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 1989 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 1930

                                           
Query: 405  gatagccgccccaatgtaaaggtactccccc 435
             |  || || || ||||| ||||||||||||
Sbjct: 1929 cactgctgcgccgatgtagaggtactccccc 1899



 Score =  101 bits (51), Expect = 3e-18
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                        
Query: 494  cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
            ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1899 cttggaagccctgaggaggttcagcttcttggtaccactcagagacatcctcccaaaagc 1840

                   
Query: 554  ccttctt 560
            |||||||
Sbjct: 1839 ccttctt 1833
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Minus

                                                                            
Query: 225      tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40778735 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 40778676

                                                                            
Query: 285      ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
                || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 40778675 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 40778616

                                                                            
Query: 345      ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
                |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 40778615 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 40778556

                                               
Query: 405      gatagccgccccaatgtaaaggtactccccc 435
                 |  || || || ||||| ||||||||||||
Sbjct: 40778555 cactgctgcgccgatgtagaggtactccccc 40778525



 Score =  103 bits (52), Expect = 7e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                            
Query: 494      cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
                ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 40778222 cttggaagccctgaggaggttcagcttcttggtaccactcagagacatcctcccaaaagc 40778163

                            
Query: 554      ccttcttttctt 565
                ||||||| ||||
Sbjct: 40778162 ccttcttatctt 40778151



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 570      ttcatcataggtgtggtggccgtcatacactccatac 606
                ||||| ||| |||||||| || |||||||||||||||
Sbjct: 40778018 ttcattatatgtgtggtgaccatcatacactccatac 40777982
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0052O12
          Length = 167881

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Minus

                                                                         
Query: 225   tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81381 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 81322

                                                                         
Query: 285   ggagttgtagtccgcgatgagcttgtcgcgcttggacctctccatcatgtagatctccgg 344
             || ||||||||| |||||||||||||||||    || |||||||||||||||||||||||
Sbjct: 81321 ggtgttgtagtcggcgatgagcttgtcgcgagccgatctctccatcatgtagatctccgg 81262

                                                                         
Query: 345   ctcaaagttgtgcggtttgtccggcttgtccatctcgatgatgcagaacacgacgatgaa 404
             |||||||||||| || |||||||| |||||||||||||| | |||||||||||||| |||
Sbjct: 81261 ctcaaagttgtgtggcttgtccggtttgtccatctcgataacgcagaacacgacgacgaa 81202

                                            
Query: 405   gatagccgccccaatgtaaaggtactccccc 435
              |  || || || ||||| ||||||||||||
Sbjct: 81201 cactgctgcgccgatgtagaggtactccccc 81171



 Score =  103 bits (52), Expect = 7e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                         
Query: 494   cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
             ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 80868 cttggaagccctgaggaggttcagcttcttggtaccactcagagacatcctcccaaaagc 80809

                         
Query: 554   ccttcttttctt 565
             ||||||| ||||
Sbjct: 80808 ccttcttatctt 80797



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 570   ttcatcataggtgtggtggccgtcatacactccatac 606
             ||||| ||| |||||||| || |||||||||||||||
Sbjct: 80664 ttcattatatgtgtggtgaccatcatacactccatac 80628
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>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full
           insert sequence
          Length = 255

 Score =  155 bits (78), Expect = 2e-34
 Identities = 87/90 (96%)
 Strand = Plus / Minus

                                                                       
Query: 225 tctgttgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 284
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtcccagatgtccat 31

                                         
Query: 285 ggagttgtagtccgcgatgagcttgtcgcg 314
           || ||||||||| |||||||||||||||||
Sbjct: 30  ggtgttgtagtcggcgatgagcttgtcgcg 1
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>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0059G01, complete sequence
          Length = 141661

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                         
Query: 494   cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
             ||||||| ||||||||||| |||| |||||| ||||| || |||||||||||||||||| 
Sbjct: 24789 cttggaagccctgaggaggttcagtttcttgataccattcagagacatcctcccagaaga 24848

                    
Query: 554   ccttctt 560
             |||||||
Sbjct: 24849 ccttctt 24855
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>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16,
              complete sequence
          Length = 159525

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                          
Query: 494    cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
              ||||||| ||||||||||| |||| |||||| ||||| || |||||||||||||||||| 
Sbjct: 131561 cttggaagccctgaggaggttcagtttcttgataccattcagagacatcctcccagaaga 131620

                     
Query: 554    ccttctt 560
              |||||||
Sbjct: 131621 ccttctt 131627
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                           
Query: 494     cttggaaaccctgaggaggctcagcttcttggtaccactcggagacatcctcccagaagc 553
               ||||||| ||||||||||| |||| |||||| ||||| || |||||||||||||||||| 
Sbjct: 3037545 cttggaagccctgaggaggttcagtttcttgataccattcagagacatcctcccagaaga 3037604

                      
Query: 554     ccttctt 560
               |||||||
Sbjct: 3037605 ccttctt 3037611
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>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence
          Length = 188326

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   atccctggtttccttagagtg 129
             |||||||||||||||||||||
Sbjct: 42455 atccctggtttccttagagtg 42435
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 443    cgaaagccatgccgaggatga 463
              |||||||||||||||||||||
Sbjct: 444488 cgaaagccatgccgaggatga 444468
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>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence
          Length = 166093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   atccctggtttccttagagtg 129
             |||||||||||||||||||||
Sbjct: 50021 atccctggtttccttagagtg 50041
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>gb|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416K5 map 15q21.1, complete
              sequence
          Length = 158405

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 546    ccagaagcccttcttttcttg 566
              |||||||||||||||||||||
Sbjct: 116380 ccagaagcccttcttttcttg 116360
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>gb|AC016710.7| Homo sapiens BAC clone RP11-241E11 from 2, complete sequence
          Length = 95836

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     tatatattctctacaatttta 26
             |||||||||||||||||||||
Sbjct: 64993 tatatattctctacaatttta 65013
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>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete
             sequence
          Length = 151880

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   atccctggtttccttagagtg 129
             |||||||||||||||||||||
Sbjct: 11203 atccctggtttccttagagtg 11223
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>emb|BX088535.6| Zebrafish DNA sequence from clone DKEY-18F5 in linkage group 14, complete
              sequence
          Length = 197465

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 369    cttgtccatctcgatgatgca 389
              |||||||||||||||||||||
Sbjct: 187082 cttgtccatctcgatgatgca 187102
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>emb|AL807786.6| Mouse DNA sequence from clone RP23-320I1 on chromosome 4, complete
              sequence
          Length = 206324

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     tctacaattttagactattac 35
              |||||||||||||||||||||
Sbjct: 196922 tctacaattttagactattac 196902
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>emb|AL645968.6| Mouse DNA sequence from clone DN-25M4 on chromosome 3, complete
             sequence
          Length = 161821

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tattctctacaattttagact 30
             |||||||||||||||||||||
Sbjct: 38616 tattctctacaattttagact 38596
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>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11
          Length = 156200

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 109    atccctggtttccttagagtg 129
              |||||||||||||||||||||
Sbjct: 143078 atccctggtttccttagagtg 143098
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>ref|XM_515113.1| PREDICTED: Pan troglodytes similar to FLJ00017 protein (LOC458809),
            mRNA
          Length = 3629

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  ccctgaggaggctcagcttc 521
            ||||||||||||||||||||
Sbjct: 2395 ccctgaggaggctcagcttc 2414
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>ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4 precursor
           (LOC515082), partial mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 218 ggtcatctctgttgacggtgaagt 241
           |||||||||||||| |||||||||
Sbjct: 306 ggtcatctctgttgccggtgaagt 283
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>gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosome 5, complete sequence
          Length = 145348

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   gcttggacctctccatcatg 333
             ||||||||||||||||||||
Sbjct: 20168 gcttggacctctccatcatg 20187
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>gb|AC125043.4| Mus musculus BAC clone RP23-342M4 from chromosome 5, complete sequence
          Length = 199287

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    gcttggacctctccatcatg 333
              ||||||||||||||||||||
Sbjct: 189306 gcttggacctctccatcatg 189325
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>gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosome 15, complete sequence
          Length = 188928

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     attttagactattactgttt 40
              ||||||||||||||||||||
Sbjct: 174326 attttagactattactgttt 174345
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>gb|AF106577.2| Caenorhabditis elegans cosmid F46F5, complete sequence
          Length = 41482

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ttacaaggttgctttatttg 83
             ||||||||||||||||||||
Sbjct: 10254 ttacaaggttgctttatttg 10235
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>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 196    aatggcacctatggttggatgagg 219
              |||||||||| |||||||||||||
Sbjct: 233529 aatggcacctctggttggatgagg 233552
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>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1,
             complete sequence
          Length = 97585

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   ccctgaggaggctcagcttc 521
             ||||||||||||||||||||
Sbjct: 62344 ccctgaggaggctcagcttc 62363
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 369     cttgtccatctcgatgatgc 388
               ||||||||||||||||||||
Sbjct: 2473775 cttgtccatctcgatgatgc 2473756
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gttttatatattctctacaa 21
             ||||||||||||||||||||
Sbjct: 46537 gttttatatattctctacaa 46518
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gttttatatattctctacaa 21
             ||||||||||||||||||||
Sbjct: 46340 gttttatatattctctacaa 46321
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gttttatatattctctacaa 21
             ||||||||||||||||||||
Sbjct: 65871 gttttatatattctctacaa 65852
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>emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chromosome 11 Contains the
             5' end of the Tcn2 gene for transcobalamin 2, two novel
             genes, a glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, the Pes1 gene for BRCT domain containing
             pescadillo homolog 1 (zebrafish), the Gcst gene for
             galactosylceramide sulfotransferase, a
             ubiquitin-conjugating enzyme E2L 3 (Ube2l3) pseuogene, the
             Sec14l4 and Sec14l2 genes for SEC14-like 4 (S. cerevisiae)
             and 2, the ortholog of human and rat SEC14-like 3 (S.
             cerevisiae) SEC14L3, a ribosomal protein L29 (Rpl29)
             pseudogene, a transformer 2 alpha homolog (Drosophila)
             (Tra2a) pseudogene and a CpG island, complete sequence
          Length = 201238

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   gggggaaatgaccaggagat 488
             ||||||||||||||||||||
Sbjct: 38470 gggggaaatgaccaggagat 38489
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>gb|AF454964.1| Rattus norvegicus prostaglandin E2 receptor type 2 (Ptger-ep2) gene,
             complete cds
          Length = 15008

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   gtttgtccggcttgtccatc 378
             ||||||||||||||||||||
Sbjct: 10070 gtttgtccggcttgtccatc 10089
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>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete
             sequence
          Length = 145861

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   aatggcacctatggttggatgagg 219
             |||||||||| |||||||||||||
Sbjct: 79367 aatggcacctctggttggatgagg 79390
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 448     gccatgccgaggatgaccgc 467
               ||||||||||||||||||||
Sbjct: 2587444 gccatgccgaggatgaccgc 2587425
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>gb|AC159003.2| Mus musculus BAC clone RP23-190L16 from chromosome 15, complete sequence
          Length = 205425

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     attttagactattactgttt 40
              ||||||||||||||||||||
Sbjct: 143177 attttagactattactgttt 143158
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>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence
          Length = 168703

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   actgacctccaactgcatctagcc 176
             |||||||||||||||| |||||||
Sbjct: 74325 actgacctccaactgcttctagcc 74302
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>emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43-035C13, complete sequence
          Length = 157305

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 196  aatggcacctatggttggatgagg 219
            |||||||||| |||||||||||||
Sbjct: 5916 aatggcacctctggttggatgagg 5939
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>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12,
              complete sequence
          Length = 211571

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tggatgaggtcatctctgtt 230
              ||||||||||||||||||||
Sbjct: 195682 tggatgaggtcatctctgtt 195663
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ggaaaccctgaggaggctca 516
               ||||||||||||||||||||
Sbjct: 1409095 ggaaaccctgaggaggctca 1409076


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,205,405
Number of Sequences: 3902068
Number of extensions: 5205405
Number of successful extensions: 85519
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85251
Number of HSP's gapped (non-prelim): 261
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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