ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17p22 |
|---|---|
| Clone Library Name | barley_pub |
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>PNR_DROME (P52168) GATA-binding factor-A (Transcription factor GATA-A)| (dGATA-A) (Protein pannier) Length = 540 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +3 Query: 480 GSRQGGSHAAVEGSHAAGEGIHAEEGTPVAE-GIHAAAGGTRGHQM-GTHDHHHEH 641 GS GG A+ SH+A E GTP H GGT GH + HHH H Sbjct: 416 GSSSGGGSASAYTSHSA-ETPALSNGTPSPHYQHHHHLGGTHGHHVTAAAAHHHFH 470
>SOX1_HUMAN (O00570) SOX-1 protein| Length = 387 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Frame = +3 Query: 474 SQGSRQGGSHAAVEG---------SHAAGEGIHAEEGTPVAEGIHAAAGGTRGHQMGTHD 626 S G GG++A V G AA + +A G H AGG H+ H Sbjct: 172 SPGGAAGGAYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHRTPAHP 231 Query: 627 H-HHEH 641 H HH H Sbjct: 232 HPHHPH 237
>TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin and yang 1)| (YY-1) (Delta transcription factor) (NF-E1) (UCR-motif DNA-binding protein) Length = 414 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 Query: 573 GIHAAAGGTRGHQMGTHDHHHEH 641 G H GG GH H HHH H Sbjct: 57 GDHGGGGGGHGHAGHHHHHHHHH 79
>MARCS_CHICK (P16527) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 280 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = +3 Query: 489 QGGSHAAVEGSH-----AAGEGIHAEEGTPVAEGIHAAAGGTR 602 +GG+ AA EG AA E EEG AE AAA G+R Sbjct: 149 EGGAAAAAEGGKEEAAAAAPEAAGGEEGKAAAEEASAAAAGSR 191
>SLYD_HAEIN (P44830) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) Length = 190 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 14/63 (22%) Frame = +3 Query: 495 GSHAAVEGSHA-AGEGIH-------AEEGTPV------AEGIHAAAGGTRGHQMGTHDHH 632 G V+G+H AG+ +H A E T G H+ GH G HH Sbjct: 114 GDEVVVDGNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDDDEEGHGCGCGGHH 173 Query: 633 HEH 641 HEH Sbjct: 174 HEH 176
>FANCG_HUMAN (O15287) Fanconi anemia group G protein (Protein FACG) (DNA-repair| protein XRCC9) Length = 622 Score = 29.6 bits (65), Expect = 7.9 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = -1 Query: 620 GTHLVATGTPRSSMDTLRNRGTLLS----MDTLPSSMATLHSSMATPLPATLAHLVTVVA 453 G + TG P ++ +L + L + + +++ + H M P A L V A Sbjct: 216 GLQELITGNPDKALSSLHEAASGLCPRPVLVQVYTALGSCHRKMGNPQRALL---YLVAA 272 Query: 452 TEEASAWAAC*LEAQQLLPPLTEHTRSL 369 +E SAW LEA +L L + T L Sbjct: 273 LKEGSAWGPPLLEASRLYQQLGDTTAEL 300
>Y101_UREPA (Q9PR43) Hypothetical protein UU101| Length = 188 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/50 (28%), Positives = 20/50 (40%) Frame = +3 Query: 492 GGSHAAVEGSHAAGEGIHAEEGTPVAEGIHAAAGGTRGHQMGTHDHHHEH 641 GG+ G H + + T +E GGT+ G H+H H H Sbjct: 133 GGAKDDCCGGHEHEHEVCCDSETKTSETQEECCGGTKDDCCGGHEHEHHH 182
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +3 Query: 474 SQGSRQGGSHAAVEGSHAAGEGIHAEEG--TPVAEGIHAAAGGTRGHQMGTHDHHHEH 641 S S +++ + S G + G T A G AAAG + HQ H HHH H Sbjct: 258 SNNSSSSSNNSFTKASSPNNNGARSVGGAATSAATGTTAAAG-SHHHQPHHHHHHHHH 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,555,556 Number of Sequences: 219361 Number of extensions: 803950 Number of successful extensions: 3936 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3838 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
