>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)|
          Length = 392

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLLDXMNEXXXGAP 172
           MGFDRALV+ V+FACNKDE LAANYLLD MNE     P
Sbjct: 354 MGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDEGP 391

>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)|
           (AtRAD23-4)
          Length = 378

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 25/33 (75%), Positives = 31/33 (93%)
 Frame = -3

Query: 288 GMGFDRALVVKVYFACNKDETLAANYLLDXMNE 190
           GMGFDRA+V++V+FACNK+E LAANYLLD M+E
Sbjct: 342 GMGFDRAMVLEVFFACNKNEELAANYLLDHMHE 374

>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)|
           (AtRAD23-3)
          Length = 419

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 24/32 (75%), Positives = 30/32 (93%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLLDXMNE 190
           MGF+RALV++V+FACNK+E LAANYLLD M+E
Sbjct: 385 MGFERALVLEVFFACNKNEELAANYLLDHMHE 416

>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)|
           (AtRAD23-1)
          Length = 371

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 25/28 (89%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLLD 202
           MGFDRALV++ + AC+++E LAANYLL+
Sbjct: 337 MGFDRALVIEAFLACDRNEELAANYLLE 364

>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)|
           (AtRAD23-2)
          Length = 368

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/28 (57%), Positives = 25/28 (89%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLLD 202
           MGFDRA+V++ + +C+++E LAANYLL+
Sbjct: 334 MGFDRAIVIEAFLSCDRNEELAANYLLE 361

>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)|
          Length = 368

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 25/32 (78%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLLDXMNE 190
           +GFDR +V++ Y AC+K+E LAANYL +  +E
Sbjct: 332 LGFDRNIVIQAYLACDKNEELAANYLFEHGHE 363

>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)|
          Length = 363

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLL 205
           +GF  +LV++ YFAC K+E LAAN+LL
Sbjct: 330 LGFPESLVIQAYFACEKNENLAANFLL 356

>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)|
          Length = 363

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLL 205
           +GF  +LV++ YFAC K+E LAAN+LL
Sbjct: 330 LGFPESLVIQAYFACEKNENLAANFLL 356

>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C|
           repair-complementing complex 58 kDa protein) (p58)
          Length = 409

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLL 205
           +GF   LV++ YFAC K+E LAAN+LL
Sbjct: 376 LGFPEGLVIQAYFACEKNENLAANFLL 402

>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C|
           repair-complementing complex 58 kDa protein) (p58)
          Length = 416

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYLL 205
           +GF   LV++ YFAC K+E LAAN+LL
Sbjct: 383 LGFPEGLVIQAYFACEKNENLAANFLL 409

>RAD23_YEAST (P32628) UV excision repair protein RAD23|
          Length = 398

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = -3

Query: 285 MGFDRALVVKVYFACNKDETLAANYL 208
           +GF+R LV++VYFAC+K+E  AAN L
Sbjct: 367 LGFERDLVIQVYFACDKNEEAAANIL 392

>MMAC_MOUSE (Q9CZD0) Methylmalonic aciduria and homocystinuria type C homolog|
          Length = 279

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 105 IDTPALXGQALEIFLRXCHF 46
           + TPA+  +AL+ FL+ CHF
Sbjct: 53  LSTPAMFDRALKPFLKSCHF 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,821,022
Number of Sequences: 219361
Number of extensions: 435789
Number of successful extensions: 921
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)