ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal18e23 |
|---|---|
| Clone Library Name | barley_pub |
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 261 bits (668), Expect = 1e-69 Identities = 130/148 (87%), Positives = 139/148 (93%) Frame = -2 Query: 670 LFPQALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLI 491 LFPQALPNAST+AAG GNLD LRNNAQFR+LLSLVQANPQILQPLLQELGKQNPQILQLI Sbjct: 244 LFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLI 303 Query: 490 QDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLE 311 Q+NQAEFL LINEPAEGD++ENLL+QF E +PQTIAVTPEENEAILRLE MGFDRALVL+ Sbjct: 304 QENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLD 363 Query: 310 VYFACNKDETLAANYLLDHMNEFDDGAP 227 V+FACNKDE LAANYLLDHMNEFDD P Sbjct: 364 VFFACNKDEQLAANYLLDHMNEFDDEGP 391
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 203 bits (516), Expect = 4e-52 Identities = 100/145 (68%), Positives = 123/145 (84%) Frame = -2 Query: 670 LFPQALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLI 491 LFPQ +P A A G GNLD LRN+ QF++L ++VQANPQILQP+LQELGKQNPQ+++LI Sbjct: 236 LFPQGMPAADAGA-GAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLI 294 Query: 490 QDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLE 311 Q++QA+FLRLINEP EG +EN++EQ +PQ + VTPEE EAI RLEGMGFDRA+VLE Sbjct: 295 QEHQADFLRLINEPVEG--EENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLE 352 Query: 310 VYFACNKDETLAANYLLDHMNEFDD 236 V+FACNK+E LAANYLLDHM+EF+D Sbjct: 353 VFFACNKNEELAANYLLDHMHEFED 377
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 191 bits (485), Expect = 2e-48 Identities = 100/148 (67%), Positives = 119/148 (80%), Gaps = 3/148 (2%) Frame = -2 Query: 670 LFPQALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLI 491 LFPQ LPN N G G LD LRN+ QF++L ++VQANPQ+LQP+LQELGKQNP +++LI Sbjct: 273 LFPQGLPNVGGNP-GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLI 331 Query: 490 QDNQAEFLRLINEPAE-GDEDENLLEQFAEGV--PQTIAVTPEENEAILRLEGMGFDRAL 320 QD+QA+FLRLINEP E G E NLL Q A G+ PQ I VT EE EAI RLE MGF+RAL Sbjct: 332 QDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERAL 391 Query: 319 VLEVYFACNKDETLAANYLLDHMNEFDD 236 VLEV+FACNK+E LAANYLLDHM+EF++ Sbjct: 392 VLEVFFACNKNEELAANYLLDHMHEFEE 419
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 165 bits (417), Expect = 1e-40 Identities = 85/148 (57%), Positives = 115/148 (77%), Gaps = 3/148 (2%) Frame = -2 Query: 670 LFPQALPNASTNAAGE--GNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQ 497 LFPQ A ++AAG G L+ LR N QF+ L S+V +NPQILQP+LQELGKQNPQ+L+ Sbjct: 224 LFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLR 280 Query: 496 LIQDNQAEFLRLINEPAEG-DEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRAL 320 LIQ+NQAEFL+L+NEP EG D D ++ +Q + +P ++ VTPEE E+I RLE MGFDRA+ Sbjct: 281 LIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAI 340 Query: 319 VLEVYFACNKDETLAANYLLDHMNEFDD 236 V+E + +C+++E LAANYLL+H +F+D Sbjct: 341 VIEAFLSCDRNEELAANYLLEHSADFED 368
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 164 bits (415), Expect = 2e-40 Identities = 83/146 (56%), Positives = 111/146 (76%), Gaps = 1/146 (0%) Frame = -2 Query: 670 LFPQALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLI 491 LFPQ A+ + G L+ LRNN QF+ L ++V +NPQILQP+LQELGKQNPQ+L+LI Sbjct: 227 LFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLI 285 Query: 490 QDNQAEFLRLINEPAEGDEDE-NLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVL 314 Q+NQAEFL+L+NEP EG + E ++ +Q + +P I VTP E EAI RLE MGFDRALV+ Sbjct: 286 QENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVI 345 Query: 313 EVYFACNKDETLAANYLLDHMNEFDD 236 E + AC+++E LAANYLL++ +F+D Sbjct: 346 EAFLACDRNEELAANYLLENSGDFED 371
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 120 bits (300), Expect = 5e-27 Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 6/148 (4%) Frame = -2 Query: 661 QALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDN 482 Q +T AAGE L+ LR+ QF+++ ++Q NP +L LLQ+LG++NPQ+LQ I + Sbjct: 217 QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 276 Query: 481 QAEFLRLINEP----AEGDEDENLLEQFAEGVPQT--IAVTPEENEAILRLEGMGFDRAL 320 Q +F++++NEP A+ + E + E PQ I VTP+E EAI RL+ +GF +L Sbjct: 277 QEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 336 Query: 319 VLEVYFACNKDETLAANYLLDHMNEFDD 236 V++ YFAC K+E LAAN+LL FDD Sbjct: 337 VIQAYFACEKNENLAANFLLS--QNFDD 362
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 120 bits (300), Expect = 5e-27 Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 6/148 (4%) Frame = -2 Query: 661 QALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDN 482 Q +T AAGE L+ LR+ QF+++ ++Q NP +L LLQ+LG++NPQ+LQ I + Sbjct: 217 QVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 276 Query: 481 QAEFLRLINEP----AEGDEDENLLEQFAEGVPQT--IAVTPEENEAILRLEGMGFDRAL 320 Q +F++++NEP A+ + E + E PQ I VTP+E EAI RL+ +GF +L Sbjct: 277 QEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 336 Query: 319 VLEVYFACNKDETLAANYLLDHMNEFDD 236 V++ YFAC K+E LAAN+LL FDD Sbjct: 337 VIQAYFACEKNENLAANFLLS--QNFDD 362
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 111 bits (278), Expect = 2e-24 Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 8/144 (5%) Frame = -2 Query: 643 STNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLR 464 +T ++G L+ LRN QF+ + ++Q NP +L LLQ++G++NPQ+LQ I +Q F++ Sbjct: 267 TTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQ 326 Query: 463 LINEPAE--------GDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEV 308 ++NEP + G + + G I VTP+E EAI RL+ +GF LV++ Sbjct: 327 MLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQA 386 Query: 307 YFACNKDETLAANYLLDHMNEFDD 236 YFAC K+E LAAN+LL FD+ Sbjct: 387 YFACEKNENLAANFLL--QQNFDE 408
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 107 bits (268), Expect = 2e-23 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 15/151 (9%) Frame = -2 Query: 643 STNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLR 464 +T +G L+ LRN QF+ + ++Q NP +L LLQ++G++NPQ+LQ I +Q F++ Sbjct: 267 TTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQ 326 Query: 463 LINEPAE---------------GDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFD 329 ++NEP + G + + G I VTP+E EAI RL+ +GF Sbjct: 327 MLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFP 386 Query: 328 RALVLEVYFACNKDETLAANYLLDHMNEFDD 236 LV++ YFAC K+E LAAN+LL FD+ Sbjct: 387 EGLVIQAYFACEKNENLAANFLL--QQNFDE 415
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 103 bits (257), Expect = 5e-22 Identities = 57/135 (42%), Positives = 85/135 (62%) Frame = -2 Query: 640 TNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRL 461 +N G+ L LR+ QF+ L +VQ NPQ+L+ +LQ++G+ +P + Q I N FL+L Sbjct: 239 SNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQL 298 Query: 460 INEPAEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVYFACNKDET 281 + E AEG+ G Q I +T EE+E+I RL +GFDR +V++ Y AC+K+E Sbjct: 299 LAEGAEGES------ALPSGGIQ-IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEE 351 Query: 280 LAANYLLDHMNEFDD 236 LAANYL +H +E +D Sbjct: 352 LAANYLFEHGHESED 366
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 72.0 bits (175), Expect = 2e-12 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 23/133 (17%) Frame = -2 Query: 583 SLLSLVQANPQILQPLLQELGKQNPQI---------------LQLIQDNQAEFLRLINEP 449 SL +V NP+ L PLL+ + + PQ+ L+ + DN + + ++ Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323 Query: 448 AEGDEDENLLEQFAEGVPQ-------TIAVTPEENEAILRLEGMGFDRALVLEVYFACNK 290 EG++ E E A G+ Q + TPE+++AI RL +GF+R LV++VYFAC+K Sbjct: 324 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 383 Query: 289 DETLAANYLL-DH 254 +E AAN L DH Sbjct: 384 NEEAAANILFSDH 396
>ARCA_STAEQ (Q5HKU2) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 34.3 bits (77), Expect = 0.35 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Frame = -2 Query: 541 PLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGV-PQTIAVTPEEN 365 P L+ +++ Q++QD E L L A+ ED N+ EQF + V ++ Sbjct: 44 PFLKVAQQEHDHFAQVLQDEGIEVLYLEKLAAQSIEDSNVREQFIDDVLAESRKTILGHE 103 Query: 364 EAILRLEGMGFDRALVLEVYFACNKDE-TLAANYLLDHMNE 245 + I +L ++AL+ ++ K+E L + +L+++M++ Sbjct: 104 KEIKKLFSTLSNQALINKIMAGVRKEEIQLESTHLVEYMDD 144
>ARCA2_STAES (Q8CMW1) Arginine deiminase 2 (EC 3.5.3.6) (ADI 2) (Arginine| dihydrolase 2) (AD 2) Length = 411 Score = 34.3 bits (77), Expect = 0.35 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Frame = -2 Query: 541 PLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGV-PQTIAVTPEEN 365 P L+ +++ Q++QD E L L A+ ED N+ EQF + V ++ Sbjct: 44 PFLKVAQQEHDHFAQVLQDEGIEVLYLEKLAAQSIEDSNVREQFIDDVLAESRKTILGHE 103 Query: 364 EAILRLEGMGFDRALVLEVYFACNKDE-TLAANYLLDHMNE 245 + I +L ++AL+ ++ K+E L + +L+++M++ Sbjct: 104 KEIKKLFSTLSNQALINKIMAGVRKEEIQLESTHLVEYMDD 144
>PFLA_HAEIN (P43751) Pyruvate formate-lyase 1-activating enzyme (EC 1.97.1.4)| (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 1) Length = 245 Score = 33.1 bits (74), Expect = 0.78 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Frame = -2 Query: 580 LLSLVQANPQILQPLLQELGKQNPQILQLIQD-NQAEFLRLINEPA--EGDEDENLLEQF 410 LL L + N Q+ Q L+ K+ + + +Q NQ ++R + P + D D +LL QF Sbjct: 127 LLDLKELNDQVHQNLIGVPNKRTLEFAKYLQKRNQHTWIRYVVVPGYTDSDHDVHLLGQF 186 Query: 409 AEGVP--QTIAVTPEENEAILRLEGMGFDRAL 320 EG+ + + + P + + + +G D L Sbjct: 187 IEGMTNIEKVELLPYHRLGVHKWKTLGLDYEL 218
>FOXP4_HUMAN (Q8IVH2) Forkhead box protein P4 (Fork head-related protein-like A)| Length = 680 Score = 33.1 bits (74), Expect = 0.78 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = -2 Query: 661 QALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDN 482 Q L ++ + GN D ++ + + +S+ +PQ+L P + PQ+ L+Q Sbjct: 75 QFLLQQASGLSSPGNNDSKQSASAVQVPVSVAMMSPQMLTPQQMQQILSPPQLQALLQQQ 134 Query: 481 QAEFLRLINEPAEGDEDE---NLLEQFAEGVPQ 392 QA L+ + E + +++ LL Q G PQ Sbjct: 135 QALMLQQLQEYYKKQQEQLHLQLLTQQQAGKPQ 167
>RIR1_HHV23 (P09853) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1144 Score = 32.7 bits (73), Expect = 1.0 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 403 GVPQTIAVTPEENEAILRLEGMGFDR--ALVLEVYFACNKDET 281 G P + +TPE EA+ R G DR AL+LE + C ++E+ Sbjct: 318 GYPVPLELTPENAEAVARFLGDAVDREPALMLEYFCRCAREES 360
>YBE7_YEAST (P34216) Protein YBL047C| Length = 1381 Score = 31.6 bits (70), Expect = 2.3 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 16/135 (11%) Frame = -2 Query: 613 DVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNP---------QILQLIQDNQAEFLRL 461 D L+ NA +L S +NP I +P +Q+ +P +I +++AE ++ Sbjct: 1248 DELQMNAFTGTLTS--SSNPTIPKPQVQQQSTSDPAQVSNDEWDEIFAGFGNSKAEPTKV 1305 Query: 460 IN-----EPAEGDEDENLLEQFAEG--VPQTIAVTPEENEAILRLEGMGFDRALVLEVYF 302 +P D + ++G V + +A TP+ + A+ L GMGF Sbjct: 1306 ATPSIPQQPIPLKNDPIVDASLSKGPIVNRGVATTPK-SLAVEELSGMGFTEEEAHNALE 1364 Query: 301 ACNKDETLAANYLLD 257 CN D A N+LLD Sbjct: 1365 KCNWDLEAATNFLLD 1379
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -2 Query: 454 EPAEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDR--ALVLEVYFACNKDET 281 + AEG D P + +TPE EA+ R G +R AL+LE + C ++ET Sbjct: 294 DDAEGLSDPRPRLGTGTAYPVPLELTPENAEAVARFLGDAVNREPALMLEYFCRCAREET 353
>ENVR_ECOLI (P0ACT2) Probable acrEF/envCD operon repressor| Length = 220 Score = 30.8 bits (68), Expect = 3.9 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 18/121 (14%) Frame = -2 Query: 538 LLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQTIAVTPEENEA 359 L E+ Q P + +LIQ++ L E D + L E+ G+ Q IA P + +A Sbjct: 58 LFNEMWLQQPSLRELIQEHLTAGL-------EHDPFQQLREKLIVGL-QYIAKIPRQ-QA 108 Query: 358 ILRL------------------EGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDDG 233 +L++ E MGF+ + EV AC + +A N LD + DG Sbjct: 109 LLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDG 168 Query: 232 A 230 A Sbjct: 169 A 169
>ENVR_ECO57 (P0ACT3) Probable acrEF/envCD operon repressor| Length = 220 Score = 30.8 bits (68), Expect = 3.9 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 18/121 (14%) Frame = -2 Query: 538 LLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQTIAVTPEENEA 359 L E+ Q P + +LIQ++ L E D + L E+ G+ Q IA P + +A Sbjct: 58 LFNEMWLQQPSLRELIQEHLTAGL-------EHDPFQQLREKLIVGL-QYIAKIPRQ-QA 108 Query: 358 ILRL------------------EGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDDG 233 +L++ E MGF+ + EV AC + +A N LD + DG Sbjct: 109 LLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDG 168 Query: 232 A 230 A Sbjct: 169 A 169
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 30.8 bits (68), Expect = 3.9 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Frame = -2 Query: 601 NNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENL 422 N +R + S++ + +++Q +L KQNP+ I++ F+ +IN + D + Sbjct: 24 NAGLWRKIKSMLDKDAELVQLSDVDLEKQNPEAATAIREADCVFMSMINFKEQIDWFKEQ 83 Query: 421 LEQ--------FAEGVPQTIAVT 377 L+Q E +P+ +A+T Sbjct: 84 LDQAINEKTIFIFESMPEAMALT 106
>YOPM_YERPE (P17778) Outer membrane protein yopM| Length = 409 Score = 30.4 bits (67), Expect = 5.1 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Frame = -2 Query: 664 PQALPNASTNAAGEGNLDVLRNNAQFRSLLSLVQANPQI-----LQPLLQELGKQNPQIL 500 P+ P+ + A +L L Q SL SL+ N + L PLL+ LG N Q+ Sbjct: 87 PELPPHLESLVASCNSLTELPELPQ--SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144 Query: 499 QLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGVP--QTIAVTPEENEAILRLEGMGFDR 326 +L + + FL++I D D N L++ + P + IA + E + L+ + F Sbjct: 145 KLPELQNSSFLKII------DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT 198 Query: 325 AL 320 A+ Sbjct: 199 AI 200
>GOGA2_HUMAN (Q08379) Golgin subfamily A member 2 (Cis-Golgi matrix protein| GM130) (Gm130 autoantigen) (Golgin-95) Length = 990 Score = 30.0 bits (66), Expect = 6.6 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Frame = -2 Query: 604 RNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGD---- 437 + AQ +++ + + Q Q L+ +QN Q+ +A+ L L+ P EGD Sbjct: 640 QQEAQGKAVAEMARQELQETQERLEAATQQNQQL-------RAQ-LSLMAHPGEGDGLDR 691 Query: 436 ---EDENLLEQFAEGVPQTIAVTPEENEA 359 EDE E+ A VPQ + PE+ E+ Sbjct: 692 EEEEDEEEEEEEAVAVPQPMPSIPEDLES 720
>MAON_MOUSE (Q8BMF3) NADP-dependent malic enzyme, mitochondrial precursor (EC| 1.1.1.40) (NADP-ME) (Malic enzyme 3) Length = 604 Score = 30.0 bits (66), Expect = 6.6 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = -2 Query: 559 NPQILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQTIAV 380 NPQ P+L ++G N ++L+ ++ L ++ G+E ++LL++F + V + Sbjct: 219 NPQQCLPVLLDVGTNNEELLR-----DPLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGI 273
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 29.6 bits (65), Expect = 8.7 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Frame = -2 Query: 580 LLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEG 401 LL + + LQP +EL +P I+ + D++ + + +P++ DE Sbjct: 608 LLDINHLRARGLQPGEEELPDISPPIV-IPDDSKDRLMNQLIDPSDIDES---------- 656 Query: 400 VPQTIAVTPEENEAILRLEGMGFD-RALVLEVYFACNKDETLAANYLLDHMNEFDDGAP 227 ++++L MGF A VYF N +A N+++ HM E D P Sbjct: 657 -------------SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEP 702
>AL2S3_HUMAN (O60296) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 3 protein (Trafficking protein, kinesin-binding 2) Length = 914 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = -2 Query: 448 AEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVYFACNKDETLAAN 269 AE D D L + + + + V E+NE++ G FD+ L+ + C KDE L Sbjct: 120 AERDRDLELAARIGQALLKRNHVLSEQNESLEEQLGQAFDQVNQLQ-HELCKKDELLRIV 178 Query: 268 YLLDHMNEFD 239 + +E D Sbjct: 179 SIASEESETD 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,706,257 Number of Sequences: 219361 Number of extensions: 1662674 Number of successful extensions: 5568 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5548 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
