ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17p15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14)... 66 8e-11
2MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15)... 32 1.2
3MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein) 31 2.7
4FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2... 29 7.9
5LOZEN_DROME (Q9W349) Protein lozenge 29 7.9

>MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14) (Protein|
           APETALA1-like B) (Protein AGAMOUS-like 10) (FDRMADS6)
           (RMADS211)
          Length = 246

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 38/77 (49%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -1

Query: 556 KELVEKQKXXXXXXXXXXXX--XXXXXXSFMMRDAPPVADTSNHPAAAGERAEDVAVQPQ 383
           KELVEKQK                    SFMMR+A P  + SN+PAAAGER EDVA    
Sbjct: 170 KELVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAGQP 229

Query: 382 VPLRTALPLWMVSHING 332
             +R  LP WM+SHING
Sbjct: 230 QHVRIGLPPWMLSHING 246



to top

>MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15) (Protein|
           APETALA1-like A) (FDRMADS3) (RMADS215)
          Length = 267

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 457 PPVADTSNHPAAAGERAEDVAVQPQVPLRTA-LPLWMVSHIN 335
           PPV     + AAA   A  VA Q QV LR   LP WM+SH+N
Sbjct: 228 PPVMMGERNDAAA---AAAVAAQGQVQLRIGGLPPWMLSHLN 266



to top

>MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein)|
          Length = 717

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
 Frame = +3

Query: 33  IHRNNTQEQRVSSKVENSSL-MLHINYMVDYSYSHL-----------SPGGKETEVDEVK 176
           I  NN      ++K++N+S  MLH+ ++ D+SY+             +P   + E+D V 
Sbjct: 358 ITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDGPNLETPSDSDEEIDVVS 417

Query: 177 YT 182
           YT
Sbjct: 418 YT 419



to top

>FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2.8.3.16)|
           (Formyl-CoA transferase)
          Length = 409

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
 Frame = +1

Query: 265 PGWPVQLVTR-TE*YAYM-----GWKPFSR*CGSPSTVEAPSGVGPEA 390
           PGW V+        Y Y+     GWKP S   G P   + P    PEA
Sbjct: 245 PGWAVKCAPGGPNDYVYVIVQPVGWKPLSELIGRPELADDPEWATPEA 292



to top

>LOZEN_DROME (Q9W349) Protein lozenge|
          Length = 826

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 454 PVADTSNHPAAAGERAEDVAVQPQVPLRTALPL 356
           P A  S H  AAGE   D+A Q +  L+  LPL
Sbjct: 23  PSASPSGHTGAAGESQLDLASQTESQLQLGLPL 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,141,740
Number of Sequences: 219361
Number of extensions: 1670768
Number of successful extensions: 4000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3999
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top