ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17p12 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 36.6 bits (83), Expect = 0.065 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = -3 Query: 535 RSSQEKRDEVFRSQEDRP-RCPSPLPRRHNRHHTLPRLEPRKQGEHLQGPCCFSKRRRRE 359 + S K EV R + P R SP PR+ + T PR++ G+ Q P S RRRR Sbjct: 506 KRSHVKNGEVGRRRRHSPSRSASPSPRKRQKE-TSPRMQ---MGKRWQSPVTKSSRRRRS 561 Query: 358 PAQQHARTLR 329 P+ AR R Sbjct: 562 PSPPPARRRR 571
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 34.3 bits (77), Expect = 0.32 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = -3 Query: 535 RSSQEKRDEVFRSQEDRP-RCPSPLPRRHNRHHTLPRLEPRKQGEHLQGPCCFSKRRRRE 359 + S K EV R + P R SP PR+ + T PR++ G+ Q P S RRRR Sbjct: 508 KRSHVKNGEVGRRRRHSPSRSASPSPRKRQKE-TSPRMQ---MGKRWQSPVTKSGRRRRS 563 Query: 358 PAQQHARTLR 329 P+ R R Sbjct: 564 PSPPPTRRRR 573
>PP2C2_YEAST (P39966) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 464 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 636 DGLWEHLTNQEAVDIVQSSPRSGSARRLIKSALLE 532 DG+W+ LT+Q+ VD+V R G I S +++ Sbjct: 234 DGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIID 268
>PP2C1_SCHPO (P40371) Protein phosphatase 2C homolog 1 (EC 3.1.3.16) (PP2C-1)| Length = 347 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/35 (51%), Positives = 27/35 (77%), Gaps = 2/35 (5%) Frame = -1 Query: 636 DGLWEHLTNQEAVDIVQS--SPRSGSARRLIKSAL 538 DGLW+ +++QEAVD V++ SPR +A RL++ AL Sbjct: 275 DGLWDVVSDQEAVDFVRNFVSPRE-AAVRLVEFAL 308
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = -3 Query: 502 RSQEDRPRCPSPLPRRH----NRHHTLPRLEPRKQGEHLQGPCCFSKRRRREPAQQHART 335 R + D+PR SP + H +RHH+ H P RR+R P+ + RT Sbjct: 308 REKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSP-----RRKRTPSPSYQRT 362 Query: 334 L 332 L Sbjct: 363 L 363
>CCNL1_RAT (Q9R1Q2) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 527 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = -3 Query: 532 SSQEKRDEVFRSQE-DRPRCPSPLPRRHNRHHTLPRLEPRKQGEHLQGPCCFSKRRRREP 356 +++ R + S+ R R S PRRH+ +H P L+ + E L+ +R++ Sbjct: 414 NNRRSRSGTYSSRSRSRSRSHSESPRRHH-NHGSPHLKAKHTREDLKSSNRHGHKRKKSR 472 Query: 355 AQQHARTLRVADVTGVSGVGHDHH 284 ++ ++T +DVT HH Sbjct: 473 SRSQSKTRDHSDVTKKHRHERGHH 496
>CCNL1_MOUSE (Q52KE7) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 532 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = -3 Query: 532 SSQEKRDEVFRSQE-DRPRCPSPLPRRHNRHHTLPRLEPRKQGEHLQGPCCFSKRRRREP 356 +++ R + S+ R R S PRRH+ +H P L+ + E L+ +R++ Sbjct: 419 NNRRSRSGTYSSRSRSRSRSHSESPRRHH-NHGSPHLKAKHTREDLKSSNRHGHKRKKSR 477 Query: 355 AQQHARTLRVADVTGVSGVGHDHH 284 ++ ++T +DVT HH Sbjct: 478 SRSQSKTRDHSDVTKKHRHERGHH 501
>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein| homolog) Length = 708 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 499 SQEDRPRCPSPLPRRHNRHHTLPRLEPRKQGEHL 398 SQ PR PLPRR R LPRL+P ++G L Sbjct: 451 SQAPIPRA-DPLPRRTRRPLLLPRLDPGQRGNKL 483
>YQM4_SCHPO (Q9UU83) Protein P1E11.04c in chromosome III| Length = 425 Score = 30.0 bits (66), Expect = 6.1 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 2/95 (2%) Frame = -3 Query: 550 KISFARSSQEKRDEVFRSQEDRPRCPSPLPRRHNRHHTLPRLEPRKQGEHLQGPCCFSKR 371 KI+ ARS+ RS PS +R ++ R + ++G H G R Sbjct: 102 KIARARSTHVASSSRHRSPSHNDSSPSTQSSLKSRG-SIRRYKSVREGSHRPG------R 154 Query: 370 RRREPAQQHARTLRVADVTGVSGVGHDHH--PLDS 272 +EP Q R DVTG+ G G HH P D+ Sbjct: 155 SSKEPLDQIDRL----DVTGLYGSGSFHHDGPFDA 185
>Y1765_STAAR (Q6GG20) UPF0168 protein SAR1765| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1733_STAAC (Q5HF87) UPF0168 protein SACOL1733| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1686_STAAM (P67315) UPF0168 protein SAV1686| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1629_STAAW (P67317) UPF0168 protein MW1629| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1614_STAAS (Q6G8P0) UPF0168 protein SAS1614| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1545_STAAB (Q2YTA4) UPF0168 protein SAB1545c| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1509_STAAN (P67316) UPF0168 protein SA1509| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R +R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEVSQLIVVKKDGTREQFSREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDE 98
>Y1079_STAS1 (Q49YB7) UPF0168 protein SSP1079| Length = 156 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/58 (24%), Positives = 27/58 (46%) Frame = -1 Query: 627 WEHLTNQEAVDIVQSSPRSGSARRLIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDD 454 +EH+ + + + + R R I + L+ + +KR +RY L+ I V D+ Sbjct: 41 FEHIEKRPLIVVKKDGTREQFLREKILNGLVRSCEKRPVRYEQLEDITNNVEWKLRDE 98
>Y1712_CAMJR (Q5HSP5) UPF0271 protein CJE1712| Length = 255 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Frame = -1 Query: 555 LIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILYLDSSLVSRAS--------- 403 L SA+ EAAKK+ +RY++ DR ++DD T++ L+ +L+ + Sbjct: 145 LSNSAMNEAAKKKGLRYANEVFADRA----YNDDGTLVSRKLEGALIHDENLAIKRVIKM 200 Query: 402 TYRGPAVSLRGAGVSLRSSTLAPYG 328 S+ G + L++ ++ +G Sbjct: 201 IKESKVTSINGKEIDLKADSICVHG 225
>Y1541_CAMJE (Q9PMC8) UPF0271 protein Cj1541| Length = 255 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Frame = -1 Query: 555 LIKSALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILYLDSSLVSRAS--------- 403 L SA+ EAAKK+ +RY++ DR ++DD T++ L+ +L+ + Sbjct: 145 LSNSAMNEAAKKKGLRYANEVFADRA----YNDDGTLVSRKLEGALIHDENLAIKRVIKM 200 Query: 402 TYRGPAVSLRGAGVSLRSSTLAPYG 328 S+ G + L++ ++ +G Sbjct: 201 IKESKVTSINGKEIDLKADSICVHG 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,575,094 Number of Sequences: 219361 Number of extensions: 1499983 Number of successful extensions: 5010 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5000 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
