ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17p08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 1308 bits (660), Expect = 0.0 Identities = 671/675 (99%) Strand = Plus / Minus Query: 1 atgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 60 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1391 atgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 1332 Query: 61 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1331 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 1272 Query: 121 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1271 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 1212 Query: 181 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1211 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacca 1152 Query: 241 gtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 gtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagca 1092 Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1032 Query: 361 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1031 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 972 Query: 421 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 971 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 912 Query: 481 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 911 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 852 Query: 541 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 600 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 851 tttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgata 792 Query: 601 cggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcagagga 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 791 cggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcagagga 732 Query: 661 gcgtagagcgtcgag 675 ||||||||||||||| Sbjct: 731 gcgtagagcgtcgag 717
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 878 bits (443), Expect = 0.0 Identities = 449/451 (99%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 1183 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1182 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 1123 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1122 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 1063 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1062 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 1003 Query: 645 atcacggatcagaggagcgtagagcgtcgag 675 ||||||||||||||||||||||||||||||| Sbjct: 1002 atcacggatcagaggagcgtagagcgtcgag 972 Score = 381 bits (192), Expect = e-102 Identities = 225/231 (97%), Gaps = 4/231 (1%) Strand = Plus / Minus Query: 1 atgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttgg 59 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1701 atgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttgg 1642 Query: 60 atgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaagg 118 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 atgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaagg 1582 Query: 119 tgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttgg 177 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 tgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1522 Query: 178 tcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 227 ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1521 tcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 753 bits (380), Expect = 0.0 Identities = 527/576 (91%) Strand = Plus / Minus Query: 99 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 158 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 159 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 218 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 219 tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 278 |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310 Query: 279 ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 338 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250 Query: 339 catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 398 |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190 Query: 399 cccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccca 458 ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccca 1130 Query: 459 cttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattg 518 |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct: 1129 cttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactg 1070 Query: 519 tcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaa 578 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1069 tcctgggaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaa 1010 Query: 579 gatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 638 ||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||| Sbjct: 1009 gatacccttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttctccat 950 Query: 639 acgaccatcacggatcagaggagcgtagagcgtcga 674 |||||| ||| | || || || ||||| |||||||| Sbjct: 949 acgaccgtcaggaataaggggggcgtacagcgtcga 914
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 751 bits (379), Expect = 0.0 Identities = 433/451 (96%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 253 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 193 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 192 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 133 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 132 cttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgacc 73 Query: 645 atcacggatcagaggagcgtagagcgtcgag 675 ||||||||||||||| ||||| | ||||||| Sbjct: 72 atcacggatcagaggggcgtacaacgtcgag 42 Score = 246 bits (124), Expect = 8e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 26 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 80 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 139 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 140 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 199 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 200 gcaaagtaccttgctgtgctcctttacc 227 ||||||||||||||||||| |||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 751 bits (379), Expect = 0.0 Identities = 433/451 (96%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 1103 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1102 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 1043 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1042 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 983 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 982 cttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaacttctccatacgacc 923 Query: 645 atcacggatcagaggagcgtagagcgtcgag 675 ||||||||||||||| ||||| | ||||||| Sbjct: 922 atcacggatcagaggggcgtacaacgtcgag 892 Score = 246 bits (124), Expect = 8e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 26 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 80 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 139 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 140 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 199 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 200 gcaaagtaccttgctgtgctcctttacc 227 ||||||||||||||||||| |||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 603 bits (304), Expect = e-169 Identities = 414/451 (91%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1114 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1113 cacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1054 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1053 gaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 994 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 ||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 993 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtagaacttctccatacgacc 934 Query: 645 atcacggatcagaggagcgtagagcgtcgag 675 |||||||| || || ||||| ||||||||| Sbjct: 933 gtcacggatgaggggcgcgtacagcgtcgag 903 Score = 180 bits (91), Expect = 4e-42 Identities = 171/195 (87%), Gaps = 7/195 (3%) Strand = Plus / Minus Query: 40 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 93 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 94 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 152 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 153 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 212 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 213 ctgtgctcctttacc 227 |||||||||||||| Sbjct: 1413 ttgtgctcctttacc 1399
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 565 bits (285), Expect = e-158 Identities = 285/285 (100%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 7066 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7065 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 436 bits (220), Expect = e-119 Identities = 225/227 (99%) Strand = Plus / Minus Query: 1 atgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 60 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7751 atgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgga 7692 Query: 61 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7691 tgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtg 7632 Query: 121 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7631 taaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcg 7572 Query: 181 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 227 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7571 gtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525 Score = 331 bits (167), Expect = 2e-87 Identities = 167/167 (100%) Strand = Plus / Minus Query: 509 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 569 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 629 acttctccatacgaccatcacggatcagaggagcgtagagcgtcgag 675 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6760 acttctccatacgaccatcacggatcagaggagcgtagagcgtcgag 6714 Score = 163 bits (82), Expect = 9e-37 Identities = 190/226 (84%) Strand = Plus / Minus Query: 450 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 510 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 569 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 570 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 630 cttctccatacgaccatcacggatcagaggagcgtagagcgtcgag 675 ||||||||| || || ||||||||||| |||||||| ||||||||| Sbjct: 3632 cttctccatgcgcccgtcacggatcaggggagcgtacagcgtcgag 3587 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 361 ttctcgactgtcatctttggctgctcgaa 389 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 486 bits (245), Expect = e-134 Identities = 275/285 (96%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 47 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 46 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 236 bits (119), Expect = 8e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 168 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311 Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 901 tccatacgcccgtcacggatgagcggcgcgtacagcgt 864
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 236 bits (119), Expect = 8e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 168 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 224 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346 Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 936 tccatacgcccgtcacggatgagcggcgcgtacagcgt 899
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 906 tccatacgcccgtcacggatgagcggcgcgtacagcgt 869 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 155 tccatacgcccgtcacggatgagcggcgcgtacagcgt 118 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 949 tccatacgcccgtcacggatgagcggcgcgtacagcgt 912 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146 Score = 117 bits (59), Expect = 5e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 900 tccatacgcccgtcacggatgagcggcgcgtacagcgt 863 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 938 tccatacgcccgtcacggatgagcggcgcgtacagcgt 901 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 937 tccatacgcccgtcacggatgagcggcgcgtacagcgt 900 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 721 tccatacgcccgtcacggatgagcggcgcgtacagcgt 684 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 950 cctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 194 bits (98), Expect = 3e-46 Identities = 188/218 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Query: 634 tccatacgaccatcacggatcagaggagcgtagagcgt 671 |||||||| || |||||||| || || ||||| ||||| Sbjct: 942 tccatacgcccgtcacggatgagcggcgcgtacagcgt 905 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 180 bits (91), Expect = 4e-42 Identities = 304/375 (81%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 361 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 420 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 421 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 480 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 481 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 540 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 541 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 600 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 601 cggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcagagga 660 ||||| || |||||||| |||||||||||||||||||| || || || ||||| || || Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttctccatgcggccgtcccggatgaggggc 883 Query: 661 gcgtagagcgtcgag 675 ||||| ||||||||| Sbjct: 882 gcgtacagcgtcgag 868
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 163 bits (82), Expect = 9e-37 Identities = 190/226 (84%) Strand = Plus / Minus Query: 450 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 510 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 569 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 570 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 630 cttctccatacgaccatcacggatcagaggagcgtagagcgtcgag 675 ||||||||| || || ||||||||||| |||||||| ||||||||| Sbjct: 1063 cttctccatgcgcccgtcacggatcaggggagcgtacagcgtcgag 1018 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 361 ttctcgactgtcatctttggctgctcgaa 389 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 631 ttctccatacgaccatcacggatcagaggagcgtagagcgt 671 ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 108808 ttctccatacgcccgtcacggatgagcggcgcgtacagcgt 108848 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 112515 Query: 635 ccat 638 |||| Sbjct: 112516 ccat 112519 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 126 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 186 accttccggcacggg 200 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 631 ttctccatacgaccatcacggatcagaggagcgtagagcgt 671 ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 30685 ttctccatacgcccgtcacggatgagcggcgcgtacagcgt 30725 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 34392 Query: 635 ccat 638 |||| Sbjct: 34393 ccat 34396 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 126 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 186 accttccggcacggg 200 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 631 ttctccatacgaccatcacggatcagaggagcgtagagcgt 671 ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 28303947 ttctccatacgcccgtcacggatgagcggcgcgtacagcgt 28303987 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28307654 Query: 635 ccat 638 |||| Sbjct: 28307655 ccat 28307658 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 126 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 186 accttccggcacggg 200 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 631 ttctccatacgaccatcacggatcagaggagcgtagagcgt 671 ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 28286396 ttctccatacgcccgtcacggatgagcggcgcgtacagcgt 28286436 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 121 bits (61), Expect = 3e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077 Query: 405 ccgcgagttcaccagcctcttgccaatgttctc 437 || |||||||||||||||||||||||||||||| Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28290103 Query: 635 ccat 638 |||| Sbjct: 28290104 ccat 28290107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 126 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 185 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 186 accttccggcacggg 200 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 1074 catacgtccatcacggatgagaggagcgta 1045
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 1074 catacgtccatcacggatgagaggagcgta 1045
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 1103 catacgtccatcacggatgagaggagcgta 1074
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 985 catacgtccatcacggatgagaggagcgta 956
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Minus Query: 496 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 555 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 556 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 615 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 616 ggagcccagtagaacttctccatacgaccatcacggatcagaggagcgta 665 |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1044 ggagcccagtagaacttctccatacgaccatcacggataaggggagcgta 995
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 901 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 900 catacgtccatcacggatgagaggagcgta 871
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 14213 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 14214 catacgtccatcacggatgagaggagcgta 14243
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 988 catacgtccatcacggatgagaggagcgta 959
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 978 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 977 catacgtccatcacggatgagaggagcgta 948
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 985 catacgtccatcacggatgagaggagcgta 956
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 988 catacgtccatcacggatgagaggagcgta 959
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 1103 catacgtccatcacggatgagaggagcgta 1074
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 3070 Query: 636 catacgaccatcacggatcagaggagcgta 665 |||||| ||||||||||| ||||||||||| Sbjct: 3069 catacgtccatcacggatgagaggagcgta 3040
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 895 Query: 636 catacgaccatcacggatcagaggagcgtagag 668 ||||||||| |||||||| || || |||||||| Sbjct: 894 catacgaccgtcacggatgaggggggcgtagag 862 Score = 97.6 bits (49), Expect = 5e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122 Query: 409 gagttcaccagcctctt 425 ||||||||||||||||| Sbjct: 1121 gagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 118 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 178 tcggtgcaaccttc 191 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 758 Query: 636 catacgaccatcacggatcagaggagcgtagag 668 ||||||||| |||||||| || || |||||||| Sbjct: 757 catacgaccgtcacggatgaggggggcgtagag 725 Score = 97.6 bits (49), Expect = 5e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 409 gagttcaccagcctctt 425 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 118 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 178 tcggtgcaaccttc 191 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 594 Query: 636 catacgaccatcacggatcagaggagcgtagag 668 ||||||||| |||||||| || || |||||||| Sbjct: 593 catacgaccgtcacggatgaggggggcgtagag 561 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 940 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 880 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821 Query: 409 gagttcaccagcctcttgcc 428 |||||||||||||||||||| Sbjct: 820 gagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 118 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 178 tcggtgcaaccttc 191 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 788 Query: 636 catacgaccatcacggatcagaggagcgtagag 668 ||||||||| |||||||| || || |||||||| Sbjct: 787 catacgaccgtcacggatgaggggggcgtagag 755 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 409 gagttcaccagcctcttgcc 428 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 118 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 177 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 178 tcggtgcaaccttc 191 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 648 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 2754 Query: 649 cggatcagaggagcgta 665 ||||| || |||||||| Sbjct: 2753 cggataaggggagcgta 2737
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 114 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 173 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 174 ttggtcggtgcaaccttccggcacgggca 202 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 648 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 1126 Query: 649 cggatcagaggagcgta 665 ||||| || |||||||| Sbjct: 1125 cggataaggggagcgta 1109 Score = 44.1 bits (22), Expect = 0.59 Identities = 58/70 (82%) Strand = Plus / Minus Query: 469 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 528 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 529 gtgtcgacga 538 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 562 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 621 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 622 cagtagaacttctccatacgaccatcacggatcagaggagcgta 665 |||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 983 cagtagaatttttccatacgaccatcacggataagaggagcgta 940 Score = 44.1 bits (22), Expect = 0.59 Identities = 43/50 (86%) Strand = Plus / Minus Query: 250 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 299 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 107 bits (54), Expect = 5e-20 Identities = 168/206 (81%) Strand = Plus / Minus Query: 466 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 525 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 526 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 585 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 645 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccatgcggccg 504 Query: 646 tcacggatcagaggagcgtagagcgt 671 || ||||| || || ||||||||||| Sbjct: 503 tcgcggatgagcggcgcgtagagcgt 478 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 107 bits (54), Expect = 5e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 561 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 620 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 188 ccagtagaatttctccatacgaccatcacggatgagaggagc 147
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 101 bits (51), Expect = 3e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 587 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 646 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttctccatacgaccgt 975 Query: 647 cacggatcagaggagcgta 665 ||||||| ||||||||||| Sbjct: 974 cacggatgagaggagcgta 956 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 258 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 317 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 318 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 377 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 378 tggctgctcgaa 389 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 44.1 bits (22), Expect = 0.59 Identities = 64/78 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 516 ttgtcctgggaaggtgtc 533 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 99.6 bits (50), Expect = 1e-17 Identities = 167/206 (81%) Strand = Plus / Minus Query: 466 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 525 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 526 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 585 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 645 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccatgcggccg 899 Query: 646 tcacggatcagaggagcgtagagcgt 671 || ||||| || || ||||||||||| Sbjct: 898 tcgcggatgagcggcgcgtagagcgt 873 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 99.6 bits (50), Expect = 1e-17 Identities = 161/198 (81%) Strand = Plus / Minus Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 342 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 283 Query: 645 atcacggatcagaggagc 662 ||||||||| |||||||| Sbjct: 282 atcacggataagaggagc 265
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttct 910 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||||||||| Sbjct: 909 ccatgcggccgtcgcggatgagcggcgcgtagagcgt 873
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 813 Query: 636 catacgaccatcacggatcagaggagcgta 665 ||||||||||||||| || ||||||||||| Sbjct: 812 catacgaccatcacgaatgagaggagcgta 783
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 635 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 986 Query: 636 catacgaccatcacggatcagaggagcgta 665 ||||||||||||||| || ||||||||||| Sbjct: 985 catacgaccatcacgaatgagaggagcgta 956
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 587 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 646 |||||||||| ||||| || || | || ||||||||||||||||||||||||||||||| Sbjct: 456 tgcagacaccaatacgatcttctctagtaggagcccagtagaacttctccatacgaccat 397 Query: 647 cacggatcagaggagc 662 ||||||| |||||||| Sbjct: 396 cacggatgagaggagc 381 Score = 48.1 bits (24), Expect = 0.038 Identities = 75/92 (81%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 514 gattgtcctgggaaggtgtcgacgatcttgac 545 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 587 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 646 |||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaatttctccatacgaccat 84 Query: 647 cacggatcagaggagc 662 ||||||| || ||||| Sbjct: 83 cacggataaggggagc 68
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 532 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 591 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 592 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 638 || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgtccat 452
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 568 tcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtag 627 |||||| |||| || |||||||| ||||| || ||||| || | || || ||||||||| Sbjct: 1042 tcggtccggaaaattcccttgcaaacaccaatgcggtcttcccttgttggtgcccagtag 983 Query: 628 aacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||||||||||| |||||||| Sbjct: 982 aacttctccatacgaccatcacggatgagaggagc 948
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 645 ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||| ||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaatttctccatacggcca 960 Query: 646 tcacggatcagagg 659 |||||||| ||||| Sbjct: 959 tcacggataagagg 946 Score = 40.1 bits (20), Expect = 9.2 Identities = 68/84 (80%) Strand = Plus / Minus Query: 259 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 318 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 319 ttgtcctgctcctggacgagcatg 342 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 83.8 bits (42), Expect = 7e-13 Identities = 159/198 (80%) Strand = Plus / Minus Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 1106 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 1047 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||| ||||| ||||| | || | || ||| || ||||||||| ||| ||||| Sbjct: 1046 gaaggtatcgacaatctttataacggcttcctcaggcacgttgtcggtcctgaaaatacc 987 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 644 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 986 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 927 Query: 645 atcacggatcagaggagc 662 ||||||||| |||||||| Sbjct: 926 atcacggataagaggagc 909
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 469 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 433
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 435
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 475 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 439
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 435
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 435
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 435
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 435
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 81.8 bits (41), Expect = 3e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || |||||||| || || ||||| ||||| Sbjct: 473 ccatgcgcccgtcacggatgagcggcgcgtacagcgt 437
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 79.8 bits (40), Expect = 1e-11 Identities = 160/200 (80%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 532 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 591 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 592 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacgg 651 || ||||| ||||| || |||||||| |||||||||||||| ||||| || || || ||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaacttgtccatgcgcccgtcgcgg 447 Query: 652 atcagaggagcgtagagcgt 671 || || || ||||| ||||| Sbjct: 446 atgagcggcgcgtacagcgt 427
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 567 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 626 ||||||| ||| ||||| ||||| ||||||||||||||||| | || || |||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtccctagttggtgcccagta 794 Query: 627 gaacttctccatacgaccatcacggatcagaggagc 662 || |||||||||||||| |||||||| |||||||| Sbjct: 793 aaatttctccatacgaccgtcacggatgagaggagc 758 Score = 48.1 bits (24), Expect = 0.038 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 534 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 535 acga 538 |||| Sbjct: 885 acga 882
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 247 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 306 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 307 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 362 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 963 gcccagtagaacttctccatacgaccatcacggataagaggagc 920
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 108 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 167 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 168 ggcattttggtcggtgcaaccttccggcacgggca 202 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 75.8 bits (38), Expect = 2e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 562 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 621 |||||||||||| ||| ||||| |||| |||||||| | || || | |||||| ||| Sbjct: 1043 acattgtcggtcctgaaaatacctgtgcaaacaccgatcctatcttccctggtgggtgcc 984 Query: 622 cagtagaacttctccatacgaccatcacggatcagaggagcgtagagcgtcgag 675 ||||| ||||||||||||||||| |||||||| || || ||||| ||||||||| Sbjct: 983 cagtaaaacttctccatacgaccgtcacggatgagcggcgcgtacagcgtcgag 930 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 492 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 533 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 473 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 437
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 435
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 469 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 433
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 469 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 433
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 471 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 435
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 634 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 635 ccatacgaccatcacggatcagaggagcgtagagcgt 671 |||| || || || ||||| || || ||||| ||||| Sbjct: 475 ccatgcgcccgtcgcggatgagcggcgcgtacagcgt 439
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 71.9 bits (36), Expect = 3e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 567 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 626 ||||||| ||| ||||| ||||| ||||||| ||||||||| | || || |||||||| Sbjct: 852 gtcggtcctgaaaatacctttgcaaacaccgacacggtcgtccctagttggtgcccagta 793 Query: 627 gaacttctccatacgaccatcacggatcagaggagc 662 || |||||||||||||| |||||||| |||||||| Sbjct: 792 aaatttctccatacgaccgtcacggatgagaggagc 757 Score = 48.1 bits (24), Expect = 0.038 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 534 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 535 acga 538 |||| Sbjct: 884 acga 881
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 222 gcccagtagaacttctccatacgaccatcacggataagtggagc 179 Score = 44.1 bits (22), Expect = 0.59 Identities = 43/50 (86%) Strand = Plus / Minus Query: 496 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 545 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 982 gcccagtagaacttctccatacgaccatcacggataagtggagc 939
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagagg 659 ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 999 gcccagtagaatttctccatacgaccatcacggataagagg 959 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 492 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 545 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagcgtagagcgt 671 ||||||||||||||||||||||| |||||||| || |||||||| || ||||| Sbjct: 995 gcccagtagaacttctccatacgcccatcacgaatgagaggagcatacagcgt 943
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 573 ctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggggttccagtagtactt 1802 Query: 633 ctccatacgaccatcacggat 653 |||||| || || |||||||| Sbjct: 1801 ctccatgcggccgtcacggat 1781 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctc 329 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 616 ggagcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 419 ggagcccagtagaacttttccatacgaccatcgcggataaggggagc 373
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 532 tc 533 || Sbjct: 2663 tc 2662
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 532 tc 533 || Sbjct: 973 tc 972
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/79 (86%), Gaps = 4/79 (5%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagt--agaacttctccatacgaccat 646 ||||||||||||||||| |||||||| || ||||| |||||||||||||||| |||| Sbjct: 1016 cagacaccgatacggtcttcacgggtcggg--ccagtcaagaacttctccatacgtccat 959 Query: 647 cacggatcagaggagcgta 665 || |||| |||||| |||| Sbjct: 958 caaggatgagaggaccgta 940
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatca 655 ||||||||||||||||||||| |||||||| |||| Sbjct: 678 ccagtagaacttctccatacgcccatcacgaatca 644
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 455 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 514 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 515 attgtcctgggaaggtgtcgac 536 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 598 atacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcaga 657 ||||| || ||||| || |||||||||||||| || ||||| ||||||||||| || ||| Sbjct: 1018 atacgatcttcacgagttggagcccagtagaatttatccatccgaccatcacgaatgaga 959 Query: 658 gg 659 || Sbjct: 958 gg 957
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Plus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 103825 gcccaatagaatttctccatacgaccgtcacgaataagaggagc 103868
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Plus Query: 619 gcccagtagaacttctccatacgaccatcacggatcagaggagc 662 ||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 82850 gcccaatagaatttctccatacgaccgtcacgaataagaggagc 82893
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 604 tcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 650 |||||||| || || ||||||||||| || |||||||| |||||||| Sbjct: 6892 tcgtcacgagtaggtgcccagtagaatttttccatacgtccatcacg 6938
>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcagtggagc 929
>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1299 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 936 ccagtagaacttctccattcttccttcacggatcagtggagc 895
>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcagtggagc 929
>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 998 ccagtagaacttctccattcttccttcacggatcagtggagc 957
>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 944 ccagtagaacttctccattcttccttcacggatcagtggagc 903
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 catcacccagagctgcctggct 284 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete cds, clone: RAFL21-28-D21 Length = 1447 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 957 ccagtagaacttctccattcttccttcacggatcagtggagc 916
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Plus Query: 621 ccagtagaacttctccatacgaccatcacggatcagaggagc 662 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 97615 ccagtagaacttctccattcttccttcacggatcagtggagc 97656
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 aatatatttagagatatattaa 34 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 tatatttagagatatattaac 35 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 gggaaggtgtcgacgatcttg 543 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 tatatttagagatatattaac 35 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 aaacatcagatattaaaagtg 104 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 aaacatcagatattaaaagtg 104 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 aaacatcagatattaaaagtg 104 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 tatatttagagatatattaac 35 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 573 ctggaagatacccttgcagacacc 596 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gtcagcaagctgcacacgct 313 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 ttgacgacagactcgtcact 560 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcagatattaaaagtggcat 108 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcagatattaaaagtggcat 108 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcagatattaaaagtggcat 108 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aatatatttagagatatatt 32 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ttgacattgtcctgctcctg 332 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 ggtgtaaaggcagctgccgtcgtcgctc 144 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 aaacatgcccagcaatcgcttgga 60 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tggcatgcttaaaaggtgta 122 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 acaccgatacggtcgtcacg 611 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ttgacattgtcctgctcctg 332 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 593 Score = 40.1 bits (20), Expect = 9.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 621 ccagtagaacttctccatacgaccatcacggatcag 656 |||||||||||||||||| | || ||||||||||| Sbjct: 208 ccagtagaacttctccattcttccttcacggatcag 173
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aatatatttagagatatatt 32 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 atcagatattaaaagtggcatgct 111 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,174,649 Number of Sequences: 3902068 Number of extensions: 4174649 Number of successful extensions: 75691 Number of sequences better than 10.0: 135 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75186 Number of HSP's gapped (non-prelim): 444 length of query: 675 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 652 effective length of database: 17,143,297,704 effective search space: 11177430103008 effective search space used: 11177430103008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
