ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal17p07 |
|---|---|
| Clone Library Name | barley_pub |
>IF2A_RAT (P68101) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 +KI L+APP YV+TT TL++ +G+SVL A+ +IE+ +G V+ P+ V++ ++ Sbjct: 224 IKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDET 283 Query: 459 LLNAQLDTLVEQNAEV 412 L QL+ L +NAEV Sbjct: 284 ELARQLERLERENAEV 299
>IF2A_MOUSE (Q6ZWX6) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 +KI L+APP YV+TT TL++ +G+SVL A+ +IE+ +G V+ P+ V++ ++ Sbjct: 224 IKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDET 283 Query: 459 LLNAQLDTLVEQNAEV 412 L QL+ L +NAEV Sbjct: 284 ELARQLERLERENAEV 299
>IF2A_BOVIN (P68102) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 +KI L+APP YV+TT TL++ +G+SVL A+ +IE+ +G V+ P+ V++ ++ Sbjct: 224 IKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDET 283 Query: 459 LLNAQLDTLVEQNAEV 412 L QL+ L +NAEV Sbjct: 284 ELARQLERLERENAEV 299
>IF2A_HUMAN (P05198) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 64.3 bits (155), Expect = 3e-10 Identities = 30/76 (39%), Positives = 51/76 (67%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 +KI L+APP YV+TT TL++ +G+SVL+ A+ +IE+ +G V+ P+ V++ ++ Sbjct: 224 IKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDET 283 Query: 459 LLNAQLDTLVEQNAEV 412 L Q++ L +NAEV Sbjct: 284 ELARQMERLERENAEV 299
>IF2A_SCHPO (P56286) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 306 Score = 61.6 bits (148), Expect = 2e-09 Identities = 32/77 (41%), Positives = 45/77 (58%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 +K+KLVAPPLYVL T LDK G+ L +A+ A I G VK P+AVSE ++ Sbjct: 219 IKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSITASNGTCTVKMKPKAVSETDEL 278 Query: 459 LLNAQLDTLVEQNAEVA 409 L + ++NAE++ Sbjct: 279 ELADLMKKFEKENAEIS 295
>IF2A_YEAST (P20459) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 304 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/68 (48%), Positives = 43/68 (63%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 VK+KLVA PLYVLTTQ LDK +GI L A++ T I K+ G + P+AV+ ED Sbjct: 218 VKVKLVAAPLYVLTTQALDKQKGIEQLESAIEKITEVITKYGGVCNITMPPKAVTATEDA 277 Query: 459 LLNAQLDT 436 L A L++ Sbjct: 278 ELQALLES 285
>IF2A_DROME (P41374) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 341 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/77 (35%), Positives = 46/77 (59%) Frame = -3 Query: 639 VKIKLVAPPLYVLTTQTLDKDQGISVLTDAVKACTAEIEKHKGKLVVKEAPRAVSEREDK 460 ++I L+APPLYV+TT T K G+ L A++ A+ ++ G+ V AP+ V+ ++ Sbjct: 223 IRINLIAPPLYVMTTSTTKKTDGLKALEVAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEA 282 Query: 459 LLNAQLDTLVEQNAEVA 409 L +L+ +NA+VA Sbjct: 283 DLARRLERAEAENAQVA 299
>SYV_VIBF1 (Q5E7U0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 957 Score = 34.7 bits (78), Expect = 0.25 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDTLVEQN 421 +DKD ++ L VK EI++ +GKL V +AP AV +E + L +TLV+ Sbjct: 889 IDKDAELARLAGEVKKTQGEIKRIEGKLGNEGFVAKAPEAVIAKEREKLEGYQETLVKLE 948 Query: 420 AE 415 A+ Sbjct: 949 AQ 950
>SYV_VIBVY (Q7MHG1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 951 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDTLV--- 430 +DKD ++ L V EI++ +GKL V +AP AV +E + L +TL Sbjct: 883 IDKDAELARLDKEVAKTQGEIKRIEGKLGNEGFVAKAPEAVIAKEREKLEGYQETLAKLE 942 Query: 429 EQNAEVA 409 EQ A +A Sbjct: 943 EQKATIA 949
>SYV_VIBVU (Q8DCE7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 951 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDTLV--- 430 +DKD ++ L V EI++ +GKL V +AP AV +E + L +TL Sbjct: 883 IDKDAELARLDKEVAKTQGEIKRIEGKLGNEGFVAKAPEAVIAKEREKLEGYQETLAKLE 942 Query: 429 EQNAEVA 409 EQ A +A Sbjct: 943 EQKATIA 949
>SYV_VIBPA (Q87LG6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 952 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDTLVE 427 +DKD ++ L +K EI++ +GKL V +AP AV +E + L +TL + Sbjct: 884 IDKDAELARLDGEIKKTHGEIKRIEGKLGNEGFVAKAPEAVVAKEREKLEGYKETLAK 941
>SYV_PHOPR (Q6LUW1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 953 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDTLVEQN 421 +DKD ++ L V EI++ +GKL V +AP V +E + L +TLV+ Sbjct: 885 IDKDAELARLDKEVAKTQGEIKRIEGKLNNQGFVAKAPEVVITKEREKLEGYQETLVKLE 944 Query: 420 AE 415 A+ Sbjct: 945 AQ 946
>SYV_YERPS (Q66F11) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 965 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDT---LV 430 +DK + L V AEIE+ +GKL V AP AV +E + L A + L+ Sbjct: 897 IDKATELDRLAKEVAKLDAEIERIEGKLGNEGFVARAPEAVVAKERERLAACAEAKQKLI 956 Query: 429 EQNAEVA 409 EQ A +A Sbjct: 957 EQQATIA 963
>SYV_YERPE (Q8ZBH1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 965 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = -3 Query: 588 LDKDQGISVLTDAVKACTAEIEKHKGKL----VVKEAPRAVSEREDKLLNAQLDT---LV 430 +DK + L V AEIE+ +GKL V AP AV +E + L A + L+ Sbjct: 897 IDKATELDRLAKEVAKLDAEIERIEGKLGNEGFVARAPEAVVAKERERLAACAEAKQKLI 956 Query: 429 EQNAEVA 409 EQ A +A Sbjct: 957 EQQATIA 963
>PLTP_MOUSE (P55065) Phospholipid transfer protein precursor (Lipid transfer| protein II) Length = 493 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +1 Query: 304 SSKSTNVDSVRMDARVRKVNIAHSCIFL----IFTIIITSNLRVLLNQGI 441 SS V +V +A V K+N+A F F+ ITS +R LLNQ I Sbjct: 135 SSGRIKVSNVSCEASVSKMNMAFGGTFRRMYNFFSTFITSGMRFLLNQQI 184
>TLR2_DROME (P30975) Tachykinin-like peptides receptor 99D (dTKR)| Length = 519 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%) Frame = -2 Query: 67 FCWCSL---YACKMLLRWCXFVRI 5 +CW + Y KM+ RWC FVR+ Sbjct: 381 YCWMNSRFRYGFKMVFRWCLFVRV 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,034,588 Number of Sequences: 219361 Number of extensions: 1388786 Number of successful extensions: 3541 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3539 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
