ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal18d21 |
|---|---|
| Clone Library Name | barley_pub |
>UBXD1_HUMAN (Q9BZV1) UBX domain-containing protein 1| Length = 441 Score = 54.7 bits (130), Expect = 8e-08 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Frame = -2 Query: 410 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGI-EFLELCGFEKPEGE 234 +VK T+ Y+ N+ +P+EEK+RKI+L N FQER+ L G EF E GF+K Sbjct: 170 RVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK---- 225 Query: 233 EILFLARDKVD 201 +L A+D+ D Sbjct: 226 -VLLPAQDQED 235
>UBXD1_MOUSE (Q99PL6) UBX domain-containing protein 1| Length = 442 Score = 52.0 bits (123), Expect = 5e-07 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 8/111 (7%) Frame = -2 Query: 410 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASL-GGIEFLELCGFEK---- 246 +VK T+ Y+ N+ +P+EEK++KI+L N FQER+ L G EF E GF+K Sbjct: 170 RVKLGVDTIAKYLDNIHLHPEEEKYQKIKLQNKVFQERINCLEGSHEFFEAIGFKKVTLP 229 Query: 245 ---PEGEEILFLARDKVDKAVLNVAGAELNSAITNPFFGVL*NREIPVVAP 102 EG+E ++ + N+A + P L +R++ V P Sbjct: 230 VPDQEGQEEFYVLGEDARAQPQNLARHKQQLLDAEPVRATL-DRQLRVFRP 279
>RS15A_SCHPO (O94715) 40S ribosomal protein S15-A| Length = 153 Score = 34.7 bits (78), Expect = 0.089 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +1 Query: 73 HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 210 H+R RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 46 HARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNM 91
>RS15B_SCHPO (Q9UTQ6) 40S ribosomal protein S15-B| Length = 154 Score = 33.9 bits (76), Expect = 0.15 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +1 Query: 73 HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 210 H+R RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 47 HARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNM 92
>RNY1_DEBHA (Q6BHB1) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase| T2-like) Length = 403 Score = 30.4 bits (67), Expect = 1.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 105 GYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQ 221 GY GNF+ D+E + GDG+ I DG + P Q Sbjct: 361 GYGGNFAWCLDTEHKHGDGKTAQTPIKISDGQCDSFPVQ 399
>DNAK_RHOS4 (Q3IYM7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 636 Score = 29.3 bits (64), Expect = 3.7 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Frame = +3 Query: 129 LEDSEERIGDGRVELGSSY---IQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYASKARNS 299 L+ +E ++EL SS I F+++ Q L L A+L+ L + S Sbjct: 253 LQRLKEAAEKAKIELSSSQQTEINQPFISMDRNTGQPLHMVMKLTRAKLESLVGDLIKKS 312 Query: 300 LLECS-------IGKSDLSEFLLVGVFNHVSDVGKE 386 L C + KSD+ E +LVG + V +E Sbjct: 313 LKPCEAALKDAGVSKSDIDEVVLVGGMTRMPRVVEE 348
>TEA1_SCHPO (P87061) Tip elongation aberrant protein 1 (Cell polarity protein| tea1) Length = 1147 Score = 29.3 bits (64), Expect = 3.7 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -2 Query: 362 VKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEEILFLARDKVDKAV--L 189 VK DE K R+T+ T + V + ++ + K + EIL + K+D L Sbjct: 571 VKTVDERKSLDGRITSVTLETLVEKYSELSKQQIVEWFKSKLYEILRDSASKIDSLTEKL 630 Query: 188 NVAGAELNSAI 156 VA AE N+A+ Sbjct: 631 KVANAEKNAAL 641
>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro| aminopeptidase 2) (Membrane-bound aminopeptidase P) (Membrane-bound APP) (Membrane-bound AmP) (mAmP) (Aminoacylproline aminopeptidase) Length = 674 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 117 NFSVLEDSEER--IGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYASKA 290 ++S + DS + +GD R+ +G+SY G ++P +K T+ P + K + Sbjct: 304 DYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTY---SPVMMTKAVKNSK 360 Query: 291 RNSLLECS 314 +LL+ S Sbjct: 361 EQALLKAS 368
>NCAP_IBVBU (P69598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +3 Query: 102 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 281 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 282 SKARNSLLEC 311 +++ C Sbjct: 299 RFEFTTVVPC 308
>NCAP_IBVBC (P69597) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +3 Query: 102 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 281 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 282 SKARNSLLEC 311 +++ C Sbjct: 299 RFEFTTVVPC 308
>NCAP_IBVB (P69596) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +3 Query: 102 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 281 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 282 SKARNSLLEC 311 +++ C Sbjct: 299 RFEFTTVVPC 308
>MSRA_THEVU (Q9AJF7) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 123 Score = 28.9 bits (63), Expect = 4.9 Identities = 27/103 (26%), Positives = 44/103 (42%) Frame = -2 Query: 410 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEE 231 +V T + Y+G +NP E+ T+ T V +E+ E+ EE Sbjct: 18 QVPGVIDTAVGYMGGTTENPTYEEV----CTDKTGHAEVVQ---VEYDP----EQVSYEE 66 Query: 230 ILFLARDKVDKAVLNVAGAELNSAITNPFFGVL*NREIPVVAP 102 +L + D + LN G ++ + I FF L ++EIP P Sbjct: 67 LLNVFWDNHNPTTLNRQGPDVGTNIARLFFTTLKSKEIPQKNP 109
>FTSZ3_PYRAB (Q9V0H5) Cell division protein ftsZ homolog 3| Length = 365 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/80 (22%), Positives = 38/80 (47%) Frame = -2 Query: 410 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEE 231 K+ + +++ N +K DE+ + N T ER+ASL + +++ G + + + Sbjct: 150 KLSKVVDSIIAIDNNKLKESDEDISQAYERINYTIVERIASL--LALIDVPGEQTLDASD 207 Query: 230 ILFLARDKVDKAVLNVAGAE 171 + F+ R A + A A+ Sbjct: 208 LKFVLRAMGSFATVGYAKAD 227
>ARL11_HUMAN (Q969Q4) ADP-ribosylation factor-like protein 11 (ADP-ribosylation| factor-like tumor suppressor protein 1) Length = 196 Score = 28.5 bits (62), Expect = 6.4 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -2 Query: 242 EGEEILFLARDKVDKAVLNVAGAELNSAITN------PFFGVL*NREIPVVAP-LKIR-R 87 EG +IL D D+A L + AEL + + PF + +E P P LKIR R Sbjct: 79 EGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNR 138 Query: 86 LNRECVTNSC 57 L+ E + C Sbjct: 139 LSLERFQDHC 148
>SYE_BACSK (Q5WLT5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 485 Score = 28.5 bits (62), Expect = 6.4 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Frame = -2 Query: 368 NVVKNPDEEKFRKIRLTNATFQERVASLGG-----IEFLELCGFEKPEGEEILFLARDKV 204 +++ NPD +K K + F E+ SLG + FL L G+ P GEE +F + Sbjct: 244 SLILNPDRQKMSKRDESIIQFVEQYKSLGYMPEAIVNFLALLGW-SPVGEEEIFSLEELC 302 Query: 203 DKAVLN 186 ++ L+ Sbjct: 303 EQFTLD 308
>LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)| (Lysosomal phospholipase A2) (Lysophospholipase 3) (LCAT-like lysophospholipase) (LLPL) Length = 412 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 128 NREIPVVAPLKIRRLNRECVTNS 60 N IPV+ PLKIR R V+ S Sbjct: 245 NNRIPVIGPLKIREQQRSAVSTS 267
>LYPA3_HUMAN (Q8NCC3) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)| (Lysosomal phospholipase A2) (Lysophospholipase 3) (LPLA2) (LCAT-like lysophospholipase) (LLPL) Length = 412 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 128 NREIPVVAPLKIRRLNRECVTNS 60 N IPV+ PLKIR R V+ S Sbjct: 245 NNRIPVIGPLKIREQQRSAVSTS 267
>FMO2_MOUSE (Q8K2I3) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) Length = 534 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = +3 Query: 36 TILQFNSTTVRHTFPIQTTDFQRGYNGNFSVLEDSEERIGDGRVEL 173 T + F TV I F GY +FS LEDS ++ D RV L Sbjct: 308 TAVVFEDGTVEEDVDIIV--FATGYTFSFSFLEDSLVKVEDNRVSL 351
>RNC_SPICI (Q53844) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 248 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 296 VASLGGIEFLELCGFEKPEGEEILFLARDKVDK 198 VA +GGI + E CG+ E E++ ARD + K Sbjct: 207 VAEIGGIRYGEGCGYTHKEAEQL--AARDALQK 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,124,456 Number of Sequences: 219361 Number of extensions: 1160945 Number of successful extensions: 3602 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3602 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
