>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)|
          Length = 464

 Score = 56.2 bits (134), Expect(2) = 1e-10
 Identities = 23/67 (34%), Positives = 44/67 (65%)
 Frame = -2

Query: 582 DLCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCTAE 403
           +LC++P+G +DY  + + FHT+ +  VP+     ++   RF+TL+D +Y+N+ R++ +AE
Sbjct: 334 ELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVISAE 393

Query: 402 AEPIELF 382
               +LF
Sbjct: 394 VPLDQLF 400



 Score = 28.9 bits (63), Expect(2) = 1e-10
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 278 FAKDRTISRLTELNSREYLEDF 213
           FA DRTISRL E+  +EY E +
Sbjct: 439 FAFDRTISRLYEMQKKEYWEQW 460

>AFG1_YEAST (P32317) Protein AFG1|
          Length = 509

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -2

Query: 579 LCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCTAEA 400
           LC +P+ A DY  L K F    V  +P    + R    RF+T +D +Y++ G+L  T  A
Sbjct: 367 LCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDEVRRFITFLDAVYDSGGKLATTGAA 426

Query: 399 EPIELF 382
           +   LF
Sbjct: 427 DFSSLF 432

>YHCM_ECOLI (P64612) Hypothetical protein yhcM|
          Length = 375

 Score = 40.0 bits (92), Expect(2) = 2e-04
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -2

Query: 579 LCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCTAEA 400
           LC       DY  L + FHT+ +  VP       + A RF+ LVD  YE   +L+ +AE 
Sbjct: 278 LCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEV 337

Query: 399 EPIELFE 379
              E+++
Sbjct: 338 PLYEIYQ 344



 Score = 24.3 bits (51), Expect(2) = 2e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 290 NELGFAKDRTISRLTELNSREYLE 219
           + L F   R +SRL E+ S EYL+
Sbjct: 346 DRLKFEFQRCLSRLQEMQSEEYLK 369

>YHCM_ECO57 (P64613) Hypothetical protein yhcM|
          Length = 375

 Score = 40.0 bits (92), Expect(2) = 2e-04
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -2

Query: 579 LCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCTAEA 400
           LC       DY  L + FHT+ +  VP       + A RF+ LVD  YE   +L+ +AE 
Sbjct: 278 LCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEV 337

Query: 399 EPIELFE 379
              E+++
Sbjct: 338 PLYEIYQ 344



 Score = 24.3 bits (51), Expect(2) = 2e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 290 NELGFAKDRTISRLTELNSREYLE 219
           + L F   R +SRL E+ S EYL+
Sbjct: 346 DRLKFEFQRCLSRLQEMQSEEYLK 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,702,316
Number of Sequences: 219361
Number of extensions: 1471564
Number of successful extensions: 2988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2988
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)