>ref|XM_467308.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2319

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 328  ctacgtcctcacttngactatatctccatccttgagctnagtttgaggcancacgagtag 387
            |||| |||||||||  |||||||| |||||||||||||  || || |||| ||| ||| |
Sbjct: 2319 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 2260

                                               
Query: 388  gccattgacccataggagcttcccatccacgccca 422
            |||||| ||||| || |||||||| || |||||||
Sbjct: 2259 gccattaacccaaagcagcttcccttcaacgccca 2225

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 328      ctacgtcctcacttngactatatctccatccttgagctnagtttgaggcancacgagtag 387
                |||| |||||||||  |||||||| |||||||||||||  || || |||| ||| ||| |
Sbjct: 28785400 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 28785341

                                                   
Query: 388      gccattgacccataggagcttcccatccacgccca 422
                |||||| ||||| || |||||||| || |||||||
Sbjct: 28785340 gccattaacccaaagcagcttcccttcaacgccca 28785306

>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 328    ctacgtcctcacttngactatatctccatccttgagctnagtttgaggcancacgagtag 387
              |||| |||||||||  |||||||| |||||||||||||  || || |||| ||| ||| |
Sbjct: 101973 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 101914

                                                 
Query: 388    gccattgacccataggagcttcccatccacgccca 422
              |||||| ||||| || |||||||| || |||||||
Sbjct: 101913 gccattaacccaaagcagcttcccttcaacgccca 101879

>gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, complete sequence
          Length = 170622

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ttttccatttccacagatgga 208
             |||||||||||||||||||||
Sbjct: 67154 ttttccatttccacagatgga 67134

>emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chromosome 10 Contains
            part of the gene for a novel protein (KIAA0934) and a
            novel gene, complete sequence
          Length = 29877

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  aatattcttttgcattttgca 265
            |||||||||||||||||||||
Sbjct: 9363 aatattcttttgcattttgca 9383

>dbj|AK042812.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730026I20
           product:unclassifiable, full insert sequence
          Length = 1292

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 188 ttttccatttccacagatgga 208
           |||||||||||||||||||||
Sbjct: 930 ttttccatttccacagatgga 910

>gb|AC079028.11|AC079028 Arabidopsis thaliana chromosome 1 BAC T32O22 genomic sequence, complete
             sequence
          Length = 50349

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   tattcttttgcattttgcatc 267
             |||||||||||||||||||||
Sbjct: 40605 tattcttttgcattttgcatc 40625

>gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, complete sequence
          Length = 183953

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   tattttccatttccacagatg 206
             |||||||||||||||||||||
Sbjct: 77721 tattttccatttccacagatg 77701

>gb|AC005574.1| Homo sapiens chromosome 5, BAC clone 120c13 (LBNL H171), complete
             sequence
          Length = 33740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tattactcttttttctttac 31
             ||||||||||||||||||||
Sbjct: 28777 tattactcttttttctttac 28796

>ref|NG_003849.1| Rattus norvegicus olfactory receptor pseudogene 1268 (Olr1268-ps)
           on chromosome 8
          Length = 1089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ttattttccatttccacaga 204
           ||||||||||||||||||||
Sbjct: 69  ttattttccatttccacaga 88

>gb|BC031509.1| Mus musculus ring finger protein 31, mRNA (cDNA clone IMAGE:3661778),
            with apparent retained intron
          Length = 2860

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1157 acaacaccttggttcctccctgcctgcttcct 1188

>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete
             sequence
          Length = 160805

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 150   acaacaccttg-ttactccctgcctgcttcct 180
             ||||||||||| || |||||||||||||||||
Sbjct: 29454 acaacaccttggttcctccctgcctgcttcct 29485

>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence
          Length = 186986

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   actccctgcctgcttccttc 182
             ||||||||||||||||||||
Sbjct: 75607 actccctgcctgcttccttc 75588

>gb|AC111647.10| Rattus norvegicus 4 BAC CH230-103E9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 232538

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 273   tatcaatgagccaatctgatcaat 296
             |||||||||||| |||||||||||
Sbjct: 41715 tatcaatgagcccatctgatcaat 41692

>emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 in linkage group 9,
              complete sequence
          Length = 169308

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    attttccatttccacagatg 206
              ||||||||||||||||||||
Sbjct: 124302 attttccatttccacagatg 124283

>gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, complete sequence
          Length = 171697

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    tattcttttgcattttgcat 266
              ||||||||||||||||||||
Sbjct: 168259 tattcttttgcattttgcat 168278

>gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete
             sequence
          Length = 79555

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    catattactcttttttcttt 29
             ||||||||||||||||||||
Sbjct: 70069 catattactcttttttcttt 70088

>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds
          Length = 34849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 150   acaacaccttg-ttactccctgcctgcttcct 180
             ||||||||||| || |||||||||||||||||
Sbjct: 23694 acaacaccttggttcctccctgcctgcttcct 23725

>gb|AC092502.2| Homo sapiens chromosome 3 clone RP11-204J18, complete sequence
          Length = 156583

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    gagtaggccattgacccata 401
              ||||||||||||||||||||
Sbjct: 130034 gagtaggccattgacccata 130015

>dbj|AK157962.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930012D15 product:ring finger protein 31,
            full insert sequence
          Length = 3294

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1506 acaacaccttggttcctccctgcctgcttcct 1537

>dbj|AK156320.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830016G16 product:ring finger protein 31,
            full insert sequence
          Length = 3466

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1545 acaacaccttggttcctccctgcctgcttcct 1576

>dbj|AK131160.1| Mus musculus premature mRNA for mFLJ00217 protein
          Length = 4939

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 996  acaacaccttggttcctccctgcctgcttcct 1027

>gb|BC057595.1| Mus musculus ring finger protein 31, mRNA (cDNA clone MGC:67171
            IMAGE:6811051), complete cds
          Length = 3443

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1462 acaacaccttggttcctccctgcctgcttcct 1493

>gb|AF060195.1|AF060195 Mus musculus proteasome regulator PA28 beta subunit gene, complete
            cds
          Length = 14089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1576 acaacaccttggttcctccctgcctgcttcct 1545

>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 150   acaacaccttg-ttactccctgcctgcttcct 180
             ||||||||||| || |||||||||||||||||
Sbjct: 65507 acaacaccttggttcctccctgcctgcttcct 65476

>ref|NM_194346.2| Mus musculus ring finger protein 31 (Rnf31), mRNA
          Length = 3443

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 150  acaacaccttg-ttactccctgcctgcttcct 180
            ||||||||||| || |||||||||||||||||
Sbjct: 1462 acaacaccttggttcctccctgcctgcttcct 1493

>emb|AL121819.6|CNS01DSL Human chromosome 14 DNA sequence BAC C-3201O4 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 143883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   atgagccaatctgatcaatt 297
             ||||||||||||||||||||
Sbjct: 45773 atgagccaatctgatcaatt 45792

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     ctcttttttctttacaggca 36
              ||||||||||||||||||||
Sbjct: 927211 ctcttttttctttacaggca 927192

>gb|AC134050.2| Homo sapiens chromosome 3 clone RP11-624D20, complete sequence
          Length = 41735

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tattcttttgcattttgcat 266
             ||||||||||||||||||||
Sbjct: 38173 tattcttttgcattttgcat 38154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,813,083
Number of Sequences: 3902068
Number of extensions: 3813083
Number of successful extensions: 82642
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 82591
Number of HSP's gapped (non-prelim): 61
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)