ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7d01 |
|---|---|
| Clone Library Name | barley_pub |
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 33.5 bits (75), Expect = 0.60 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Frame = +3 Query: 303 ISALLPR-PRDIWVLACRASRVHRP*SVRLQDADLVVHIFD---DQMELPKKP 449 IS+ LP P DIW +A SR H+ + LQ++ +++ I +++ELP P Sbjct: 465 ISSPLPAAPLDIWTVATNGSRFHKLLFIALQESTMILKIAAGTVEELELPHNP 517
>OSBL6_HUMAN (Q9BZF3) Oxysterol-binding protein-related protein 6 (OSBP-related| protein 6) (ORP-6) Length = 934 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/84 (22%), Positives = 26/84 (30%) Frame = +3 Query: 330 DIWVLACRASRVHRP*SVRLQDADLVVHIFDDQMELPKKPCKQVGTFRLRKVTNGYLANN 509 D WV R R++R + D HIF P V + N + + Sbjct: 170 DAWVSKLRHHRLYRQNEIVRSPRDASFHIFPSTSTAESSPAANVSVMDGKMQPNSFPWQS 229 Query: 510 SLPCXXXXXXXXXXXXXXTSRWLQ 581 LPC + WLQ Sbjct: 230 PLPCSNSLPATCTTGQSKVAAWLQ 253
>SYT_THET8 (P56881) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 659 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -3 Query: 668 DMPVGLSEGWPGRQAGTKLSAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAV 507 D+ L EGW R G A+VDG+LY L P G K+++ K+ ++ + Sbjct: 21 DVARALGEGWERRAVG----AIVDGELYDLLKP-LPQGAKVRLLTEKDPEFQTL 69
>SYT_THET2 (Q72HH1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 659 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -3 Query: 668 DMPVGLSEGWPGRQAGTKLSAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAV 507 D+ L EGW R G A+VDG+LY L P G K+++ K+ ++ + Sbjct: 21 DVARALGEGWERRAVG----AIVDGELYDLLKP-LPQGAKVRLLTEKDPEFQTL 69
>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)| Length = 372 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -3 Query: 674 WSDMPVGLSEGWPGRQAGTKLSAVVDGDLYALEPPTCSDGG--KIKIYDPKEDTWKAVVS 501 W +M G+ EGW G +S V+ L+ + S+ G +K+Y +DTW+ V Sbjct: 255 WREMSGGMKEGWTG------VSVVIRDRLFVI-----SEHGDFPMKVYCSDDDTWRYVSG 303 Query: 500 EVPVGD 483 E G+ Sbjct: 304 EKLQGE 309
>OSBL6_MOUSE (Q8BXR9) Oxysterol-binding protein-related protein 6 (OSBP-related| protein 6) (ORP-6) Length = 959 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/84 (22%), Positives = 26/84 (30%) Frame = +3 Query: 330 DIWVLACRASRVHRP*SVRLQDADLVVHIFDDQMELPKKPCKQVGTFRLRKVTNGYLANN 509 D WV R R++R + D HIF P V + N + + Sbjct: 170 DAWVSKLRHHRLYRQNEIVRSPRDASFHIFPATSTAESSPAANVSVVDGKMQPNSFPWQS 229 Query: 510 SLPCXXXXXXXXXXXXXXTSRWLQ 581 LPC + WLQ Sbjct: 230 PLPCSNSLPATCTTGQSKVAAWLQ 253
>Y148_HAEIN (P44544) Protein HI0148 precursor| Length = 379 Score = 30.8 bits (68), Expect = 3.9 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = -3 Query: 641 WPGRQAGTKLSAVVDGDLYALEPPTCSDGGKIKI------YDPKEDTWKAVVSEVPVG 486 +PG + ++A VDG LY ++ G++++ Y+P ++TW + + P G Sbjct: 77 FPGGERNQPVAAAVDGKLYVFGGLQKNEKGELQLVNDAYRYNPSDNTWMKLPTRSPRG 134
>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog| Length = 775 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 547 IFPPSEQVGGSRAYRSPSTTALNFVPACLPGQPSLRPT 660 + PP +GGSR +P+ PACL G P + T Sbjct: 250 VLPPPHGLGGSRGPPTPAPPGAPGGPACLGGPPGVSAT 287
>NU1C_MARPO (P06255) NAD(P)H-quinone oxidoreductase chain 1, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 1) (NADH-plastoquinone oxidoreductase chain 1) Length = 368 Score = 30.4 bits (67), Expect = 5.1 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +1 Query: 367 IGLRASVCRMLILLFISLMTKWSFPR 444 IG+ ++ + + LFIS+MT+W+ PR Sbjct: 310 IGIVITLVKSYLFLFISIMTRWTLPR 335
>YSR3_CAEEL (Q09951) Hypothetical protein F59B10.3| Length = 233 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +1 Query: 313 CSQGPETSGFWHVEPVASIGLRASVCRMLILLFISLMTKWSFPRS 447 C+ G +G+WH ++ L C ++I+ F+ + W F RS Sbjct: 140 CADGCCKNGYWHNRYGWAVALIVIFCILVIVAFVIWLVVWLFNRS 184
>BTBD5_HUMAN (Q9NXS3) BTB/POZ domain-containing protein 5| Length = 571 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -3 Query: 611 SAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAVVS 501 +AV+DG +YA+ + ++ YDP +D+W+ V S Sbjct: 428 AAVLDGMIYAIGGYGPAHMNSVERYDPSKDSWEMVAS 464
>YJHT_ECOLI (P39371) Hypothetical protein yjhT precursor| Length = 368 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Frame = -3 Query: 641 WPGRQAGTKLSAVVDGDLYALEPPTCSDGGKIKI------YDPKEDTWKAVVSEVPVG 486 +PG SA +DG+LY + G ++ Y+PK ++W ++S P+G Sbjct: 70 FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG 127
>NU1C_SYNY3 (P26522) NAD(P)H-quinone oxidoreductase chain 1 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 1) (NDH-1, chain 1) Length = 372 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +1 Query: 325 PETSGFWHVEPVASIGLRASVCRMLILLFISLMTKWSFPR 444 P TS W +A++G+ +V + L+FI+++ +W+ PR Sbjct: 297 PTTS--WLQVLMAALGITMTVLKSYFLIFIAILLRWTVPR 334
>KBTBB_MOUSE (Q8BNW9) Kelch repeat and BTB domain-containing protein 11| Length = 633 Score = 30.0 bits (66), Expect = 6.7 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = -3 Query: 638 PGRQAGTKLSAV-VDGDLYALEPPTCSDGGK----IKIYDPKEDTWKAVVSEVPVGDFA 477 P RQA +++ + +DG LYA+ GG+ ++ YDP+ D W A V+ +P G FA Sbjct: 403 PLRQARSQVQLLALDGHLYAV-------GGECLLSVERYDPRADRWTA-VAPLPRGAFA 453
>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513| Length = 479 Score = 29.6 bits (65), Expect = 8.7 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -1 Query: 403 RSASCKRTL*GLWTRLARHAKTQMSLGLGSKALMFGEWWAQRNLQPPNLLAVR 245 R A+C T G W RH K G G L E WA + PP++L+ R Sbjct: 411 RCATCAYTT-GHWDNYKRHQKVYGHGGAGGPGLSASEGWAPPH-SPPSVLSSR 461
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/59 (35%), Positives = 24/59 (40%) Frame = +1 Query: 484 SPTGTSLTTAFHVSSLGSYIFIFPPSEQVGGSRAYRSPSTTALNFVPACLPGQPSLRPT 660 SPT S T + S S + PSEQ G S Y S T P P PS P+ Sbjct: 1786 SPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPS 1844
>BTBD5_MOUSE (Q9CR40) BTB/POZ domain-containing protein 5| Length = 571 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 611 SAVVDGDLYALEPPTCSDGGKIKIYDPKEDTWKAV 507 +AV+DG LYA+ + ++ YDP +D+W+ V Sbjct: 428 AAVLDGMLYAIGGYGPAHMNSVERYDPSKDSWEMV 462 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,236,185 Number of Sequences: 219361 Number of extensions: 2366259 Number of successful extensions: 5719 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5718 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
