ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196054.1| Oryza sativa (japonica cultivar-group) putative... 135 2e-28
2gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 gen... 135 2e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4dbj|AK111523.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
6ref|XM_783449.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 44 0.59
7gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 42 2.3
8gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 42 2.3
9emb|AJ294539.1|MMU294539 Mus musculus partial NFKBIL2 gene for I... 42 2.3
10gb|AY508536.1| Enodia portlandia voucher DNA96-018 cytochrome ox... 40 9.2
11gb|AC101921.8| Mus musculus chromosome 15, clone RP24-176G17, co... 40 9.2
12gb|AC099594.6| Mus musculus chromosome 15, clone RP23-458G7, com... 40 9.2
13gb|AC141478.3| Mus musculus BAC clone RP24-82N16 from chromosome... 40 9.2
14gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 40 9.2
15gb|AC128671.4| Mus musculus BAC clone RP23-247F12 from 18, compl... 40 9.2
16gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complet... 40 9.2
17gb|AC123043.2| Mus musculus BAC clone RP24-547G7 from 13, comple... 40 9.2
18emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4,... 40 9.2
19emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in ... 40 9.2
20gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromos... 40 9.2
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
22gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis tha... 40 9.2
23gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete ... 40 9.2
24emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, com... 40 9.2
25emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4,... 40 9.2
26gb|AC154259.1| Mus musculus BAC clone RP24-220E4 from 14, comple... 40 9.2
27gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome... 40 9.2
28emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chr... 40 9.2
29emb|AL713853.6| Mouse DNA sequence from clone RP23-63C10 on chro... 40 9.2 
>ref|NM_196054.1| Oryza sativa (japonica cultivar-group) putative kelch-containing
            protein (OSJNBa0073L01.3), mRNA
          Length = 1796

 Score =  135 bits (68), Expect = 2e-28
 Identities = 194/236 (82%)
 Strand = Plus / Minus

                                                                        
Query: 414  atctttgatgaccaaatggagcttcccaagaagccctgcaagcaagtagggacttttcga 473
            ||||||||||| ||||| |||||| |||||||  |||||||| ||||| |||| || |||
Sbjct: 1366 atctttgatgatcaaattgagcttgccaagaaatcctgcaagtaagtatggacattccga 1307

                                                                        
Query: 474  ctccgcaaagtcaccaacgggtacctcgctaacaacagccttccatgtatcctccttagg 533
            ||| ||||||||||| || ||||||| || ||   || ||||||| | |||||||| |||
Sbjct: 1306 ctctgcaaagtcacccactggtacctggccaatggcaaccttccaagcatcctcctgagg 1247

                                                                        
Query: 534  atcatatatctttatctttcctccatcagaacaagtcggtggctccagagcatacaggtc 593
            |||||| ||||| ||||| |||| ||||||| |||| | |||||||| |||||||| |||
Sbjct: 1246 atcataaatcttgatcttacctctatcagaagaagttgatggctccaaagcatacaagtc 1187

                                                                    
Query: 594  cccgtccacaacagcacttaattttgtcccggcttgcctcccaggccaaccctcgc 649
            ||| || |  ||||||||||| || || || || |||||| | ||||| |||||||
Sbjct: 1186 cccatctatgacagcacttaacttcgtaccagcctgcctcgctggccagccctcgc 1131
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>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
              sequence
          Length = 179199

 Score =  135 bits (68), Expect = 2e-28
 Identities = 194/236 (82%)
 Strand = Plus / Minus

                                                                          
Query: 414    atctttgatgaccaaatggagcttcccaagaagccctgcaagcaagtagggacttttcga 473
              ||||||||||| ||||| |||||| |||||||  |||||||| ||||| |||| || |||
Sbjct: 118619 atctttgatgatcaaattgagcttgccaagaaatcctgcaagtaagtatggacattccga 118560

                                                                          
Query: 474    ctccgcaaagtcaccaacgggtacctcgctaacaacagccttccatgtatcctccttagg 533
              ||| ||||||||||| || ||||||| || ||   || ||||||| | |||||||| |||
Sbjct: 118559 ctctgcaaagtcacccactggtacctggccaatggcaaccttccaagcatcctcctgagg 118500

                                                                          
Query: 534    atcatatatctttatctttcctccatcagaacaagtcggtggctccagagcatacaggtc 593
              |||||| ||||| ||||| |||| ||||||| |||| | |||||||| |||||||| |||
Sbjct: 118499 atcataaatcttgatcttacctctatcagaagaagttgatggctccaaagcatacaagtc 118440

                                                                      
Query: 594    cccgtccacaacagcacttaattttgtcccggcttgcctcccaggccaaccctcgc 649
              ||| || |  ||||||||||| || || || || |||||| | ||||| |||||||
Sbjct: 118439 cccatctatgacagcacttaacttcgtaccagcctgcctcgctggccagccctcgc 118384
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  135 bits (68), Expect = 2e-28
 Identities = 194/236 (82%)
 Strand = Plus / Minus

                                                                            
Query: 414      atctttgatgaccaaatggagcttcccaagaagccctgcaagcaagtagggacttttcga 473
                ||||||||||| ||||| |||||| |||||||  |||||||| ||||| |||| || |||
Sbjct: 10787851 atctttgatgatcaaattgagcttgccaagaaatcctgcaagtaagtatggacattccga 10787792

                                                                            
Query: 474      ctccgcaaagtcaccaacgggtacctcgctaacaacagccttccatgtatcctccttagg 533
                ||| ||||||||||| || ||||||| || ||   || ||||||| | |||||||| |||
Sbjct: 10787791 ctctgcaaagtcacccactggtacctggccaatggcaaccttccaagcatcctcctgagg 10787732

                                                                            
Query: 534      atcatatatctttatctttcctccatcagaacaagtcggtggctccagagcatacaggtc 593
                |||||| ||||| ||||| |||| ||||||| |||| | |||||||| |||||||| |||
Sbjct: 10787731 atcataaatcttgatcttacctctatcagaagaagttgatggctccaaagcatacaagtc 10787672

                                                                        
Query: 594      cccgtccacaacagcacttaattttgtcccggcttgcctcccaggccaaccctcgc 649
                ||| || |  ||||||||||| || || || || |||||| | ||||| |||||||
Sbjct: 10787671 cccatctatgacagcacttaacttcgtaccagcctgcctcgctggccagccctcgc 10787616
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>dbj|AK111523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P06, full
            insert sequence
          Length = 1803

 Score =  135 bits (68), Expect = 2e-28
 Identities = 194/236 (82%)
 Strand = Plus / Minus

                                                                        
Query: 414  atctttgatgaccaaatggagcttcccaagaagccctgcaagcaagtagggacttttcga 473
            ||||||||||| ||||| |||||| |||||||  |||||||| ||||| |||| || |||
Sbjct: 1380 atctttgatgatcaaattgagcttgccaagaaatcctgcaagtaagtatggacattccga 1321

                                                                        
Query: 474  ctccgcaaagtcaccaacgggtacctcgctaacaacagccttccatgtatcctccttagg 533
            ||| ||||||||||| || ||||||| || ||   || ||||||| | |||||||| |||
Sbjct: 1320 ctctgcaaagtcacccactggtacctggccaatggcaaccttccaagcatcctcctgagg 1261

                                                                        
Query: 534  atcatatatctttatctttcctccatcagaacaagtcggtggctccagagcatacaggtc 593
            |||||| ||||| ||||| |||| ||||||| |||| | |||||||| |||||||| |||
Sbjct: 1260 atcataaatcttgatcttacctctatcagaagaagttgatggctccaaagcatacaagtc 1201

                                                                    
Query: 594  cccgtccacaacagcacttaattttgtcccggcttgcctcccaggccaaccctcgc 649
            ||| || |  ||||||||||| || || || || |||||| | ||||| |||||||
Sbjct: 1200 cccatctatgacagcacttaacttcgtaccagcctgcctcgctggccagccctcgc 1145
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  135 bits (68), Expect = 2e-28
 Identities = 194/236 (82%)
 Strand = Plus / Minus

                                                                            
Query: 414      atctttgatgaccaaatggagcttcccaagaagccctgcaagcaagtagggacttttcga 473
                ||||||||||| ||||| |||||| |||||||  |||||||| ||||| |||| || |||
Sbjct: 10793890 atctttgatgatcaaattgagcttgccaagaaatcctgcaagtaagtatggacattccga 10793831

                                                                            
Query: 474      ctccgcaaagtcaccaacgggtacctcgctaacaacagccttccatgtatcctccttagg 533
                ||| ||||||||||| || ||||||| || ||   || ||||||| | |||||||| |||
Sbjct: 10793830 ctctgcaaagtcacccactggtacctggccaatggcaaccttccaagcatcctcctgagg 10793771

                                                                            
Query: 534      atcatatatctttatctttcctccatcagaacaagtcggtggctccagagcatacaggtc 593
                |||||| ||||| ||||| |||| ||||||| |||| | |||||||| |||||||| |||
Sbjct: 10793770 atcataaatcttgatcttacctctatcagaagaagttgatggctccaaagcatacaagtc 10793711

                                                                        
Query: 594      cccgtccacaacagcacttaattttgtcccggcttgcctcccaggccaaccctcgc 649
                ||| || |  ||||||||||| || || || || |||||| | ||||| |||||||
Sbjct: 10793710 cccatctatgacagcacttaacttcgtaccagcctgcctcgctggccagccctcgc 10793655
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>ref|XM_783449.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC583545 (LOC583545), mRNA
          Length = 861

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 294 tctccaaacatcagtgccttgc 315
           ||||||||||||||||||||||
Sbjct: 383 tctccaaacatcagtgccttgc 362
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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   ctttgagcccaccattctcca 299
             |||||||||||||||||||||
Sbjct: 68453 ctttgagcccaccattctcca 68473
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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 279   ctttgagcccaccattctcca 299
             |||||||||||||||||||||
Sbjct: 13980 ctttgagcccaccattctcca 13960
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>emb|AJ294539.1|MMU294539 Mus musculus partial NFKBIL2 gene for IkappaB related protein, exons
            2-8
          Length = 3447

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 279  ctttgagcccaccattctcca 299
            |||||||||||||||||||||
Sbjct: 2333 ctttgagcccaccattctcca 2353
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>gb|AY508536.1| Enodia portlandia voucher DNA96-018 cytochrome oxidase subunit I
            (COI) gene, partial cds; mitochondrial
          Length = 1268

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  tcctccttaggatcatatat 542
            ||||||||||||||||||||
Sbjct: 1096 tcctccttaggatcatatat 1115
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>gb|AC101921.8| Mus musculus chromosome 15, clone RP24-176G17, complete sequence
          Length = 166654

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   gagcccaccattctccaaac 302
             ||||||||||||||||||||
Sbjct: 93054 gagcccaccattctccaaac 93073
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>gb|AC099594.6| Mus musculus chromosome 15, clone RP23-458G7, complete sequence
          Length = 220242

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gagcccaccattctccaaac 302
              ||||||||||||||||||||
Sbjct: 204338 gagcccaccattctccaaac 204357
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>gb|AC141478.3| Mus musculus BAC clone RP24-82N16 from chromosome 18, complete sequence
          Length = 184122

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    gttgttcatatctttgatga 424
              ||||||||||||||||||||
Sbjct: 123113 gttgttcatatctttgatga 123094
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>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 386   tttgcaggatgctgatcttgttgt 409
             |||||||||| |||||||||||||
Sbjct: 13881 tttgcaggatcctgatcttgttgt 13858
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>gb|AC128671.4| Mus musculus BAC clone RP23-247F12 from 18, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    gttgttcatatctttgatga 424
              ||||||||||||||||||||
Sbjct: 167468 gttgttcatatctttgatga 167487
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>gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complete sequence
          Length = 135317

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   catcagtgccttgctcccaa 321
             ||||||||||||||||||||
Sbjct: 44615 catcagtgccttgctcccaa 44634
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>gb|AC123043.2| Mus musculus BAC clone RP24-547G7 from 13, complete sequence
          Length = 230940

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    caagaagccctgcaagcaag 459
              ||||||||||||||||||||
Sbjct: 132499 caagaagccctgcaagcaag 132480
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>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07,
             complete sequence
          Length = 129198

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   atatatctttatctttcctc 556
             ||||||||||||||||||||
Sbjct: 23722 atatatctttatctttcctc 23741
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>emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in linkage group 13,
              complete sequence
          Length = 192818

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    acaaaagacacaatgattca 188
              ||||||||||||||||||||
Sbjct: 149600 acaaaagacacaatgattca 149581
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>gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromosome unknown, complete
              sequence
          Length = 224272

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    ccaaggcccagagacatctg 337
              ||||||||||||||||||||
Sbjct: 200968 ccaaggcccagagacatctg 200949
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 537      atatatctttatctttcctc 556
                ||||||||||||||||||||
Sbjct: 17933443 atatatctttatctttcctc 17933462
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>gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 74316

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   ttgttgttcatatctttgat 422
             ||||||||||||||||||||
Sbjct: 59363 ttgttgttcatatctttgat 59344
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>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence
          Length = 217034

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 148    tgataggaagtaatctactttaca 171
              |||||||||||||||| |||||||
Sbjct: 123757 tgataggaagtaatctcctttaca 123734
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>emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, complete sequence
          Length = 207797

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   acaaaagacacaatgattca 188
             ||||||||||||||||||||
Sbjct: 71217 acaaaagacacaatgattca 71236
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>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04,
              complete sequence
          Length = 164645

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 537    atatatctttatctttcctc 556
              ||||||||||||||||||||
Sbjct: 130198 atatatctttatctttcctc 130217
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>gb|AC154259.1| Mus musculus BAC clone RP24-220E4 from 14, complete sequence
          Length = 162752

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    caaacatcagtgccttgctc 317
              ||||||||||||||||||||
Sbjct: 121040 caaacatcagtgccttgctc 121021
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>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete
              sequence
          Length = 231341

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    ccaaggcccagagacatctg 337
              ||||||||||||||||||||
Sbjct: 193302 ccaaggcccagagacatctg 193321
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>emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chromosome 2, complete
             sequence
          Length = 81950

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   catcagtgccttgctcccaa 321
             ||||||||||||||||||||
Sbjct: 59026 catcagtgccttgctcccaa 59007
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>emb|AL713853.6| Mouse DNA sequence from clone RP23-63C10 on chromosome 2, complete
             sequence
          Length = 178652

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   tccaaacatcagtgccttgc 315
             ||||||||||||||||||||
Sbjct: 56475 tccaaacatcagtgccttgc 56456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,116,523
Number of Sequences: 3902068
Number of extensions: 6116523
Number of successful extensions: 120774
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120594
Number of HSP's gapped (non-prelim): 175
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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