>ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precursor|
          Length = 345

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVA 391
           RS+S  HSL V +L  +L+RFTL+LPE V+R++V+
Sbjct: 224 RSHSTGHSL-VQQLGENLDRFTLQLPEEVQRQLVS 257

>ATL2F_ARATH (O64762) Putative RING-H2 finger protein ATL2F|
          Length = 302

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREM-------VAAGEQSAHRRAQR---AGR 346
           RS+S  HS+ V  LD +L+RFTLRLPE VRR++       VA  +  + RR  R   AG 
Sbjct: 197 RSHSTGHSV-VQPLD-NLDRFTLRLPEEVRRQLTKKTVDNVAFSQARSSRRGYRSRSAGS 254

Query: 345 WPSFLRYTRTL 313
             S   Y R +
Sbjct: 255 ERSVFSYQRRM 265

>ATL2G_ARATH (O64763) RING-H2 finger protein ATL2G precursor (RING-H2 finger|
           protein ATL9)
          Length = 378

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVAAGEQSAH 370
           RS+S  HSL  ++   +L+RFTLRLP+ VRR+++       H
Sbjct: 254 RSHSTGHSL--IQPAGNLDRFTLRLPDDVRRQLMKTSRTMGH 293

>ATL1H_ARATH (Q9C7I1) Putative RING-H2 finger protein ATL1H precursor|
          Length = 327

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREM 397
           RS+S  HSL V R++ +L+RFTL+LPE VRR++
Sbjct: 250 RSHSTGHSL-VPRVE-NLDRFTLQLPEEVRRQL 280

>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor|
          Length = 357

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/35 (48%), Positives = 28/35 (80%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVA 391
           RS+S  HSL  V+  ++++RFTL+LPE V+R++V+
Sbjct: 234 RSHSTGHSL--VQPCQNIDRFTLQLPEEVQRQLVS 266

>ATL4B_ARATH (Q9M0R6) Putative RING-H2 finger protein ATL4B precursor|
          Length = 302

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/30 (46%), Positives = 25/30 (83%)
 Frame = -2

Query: 480 DHSLXVVRLDRDLERFTLRLPEHVRREMVA 391
           +HSL  ++L  +L+RFTL+LPE ++R++V+
Sbjct: 192 EHSL--LQLGTNLDRFTLQLPEEMQRQLVS 219

>ATL3B_ARATH (Q8RXX9) RING-H2 finger protein ATL3B precursor (RING-H2 finger|
           protein ATL6)
          Length = 398

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMV 394
           RS++  HS  VV+     ERFTLRLPE VR+ ++
Sbjct: 237 RSHTTGHS--VVQPGECTERFTLRLPEDVRKRIM 268

>CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2)|
          Length = 1662

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
 Frame = -3

Query: 257  CPLHR------RRGLEGSAWPPCISSNAAACPVPK--SALWRSMWTRTRQLAGRFERRKG 102
            CPL R      R   +G ++P  I S+  +C   K  S  WR + T  R+ +GRF     
Sbjct: 1414 CPLPRAELEQHRADFKGGSFPLSIVSSYNSCSKKKGESGAWRKVNTSPRRKSGRFSLPTW 1473

Query: 101  TRLLNLQSGVLPTHAGSLCCTINSKRDRNQSL 6
             +      G+       L C  N+   +  SL
Sbjct: 1474 NKPDLSTEGIKNKTLSQLNCNRNASLSKQMSL 1505

>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)|
          Length = 1655

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
 Frame = -3

Query: 257  CPLHRRR------GLEGSAWPPCISSNAAACPVPK-SALWRSMWTRTRQLAGRFERRKGT 99
            CPL R          +G ++P  + S+  +C   K S  WR + T  R+ +GRF      
Sbjct: 1407 CPLPRAELDQHTADFKGGSFPLSLVSSYNSCSKKKESGAWRKVNTSPRRKSGRFSSPTWN 1466

Query: 98   RLLNLQSGVLPTHAGSLCCTINSKRDRNQSL 6
            +      G+       L C  N+   + +SL
Sbjct: 1467 KADPSSEGLKNKTISQLNCNKNASLSKQKSL 1497

>ATL4I_ARATH (O49691) Putative RING-H2 finger protein ATL4I|
          Length = 289

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVAAGEQS 376
           RS+S  HS+ V     + +++TLRLPEHV+ ++     Q+
Sbjct: 220 RSHSTGHSI-VRNKPEEEDKYTLRLPEHVKIKVTRGHSQT 258

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 33   VNSTAQTPRMRWKDTAL*VQKSCSFSTFEPAG*LPCPCP-HRPPQSXXXXXXXXXXXXXX 209
            +N+ A TPR +WK T L      +++T E    LP   P   PP +              
Sbjct: 886  LNTGAVTPRAKWKGTWL-AAALWAYATLEQ---LPAAAPTPPPPPASAAAASTAPRAAES 941

Query: 210  XXXXASL*SSSTMKRTPLL--PRSSP 281
                A   + +T  RTPLL  P+ +P
Sbjct: 942  RPAAAPAPAEATATRTPLLTAPQLAP 967

>ATL5H_ARATH (Q8LGA5) RING-H2 finger protein ATL5H precursor|
          Length = 368

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVA 391
           RS++  HS  VV      +RFTLR+PE +R++++A
Sbjct: 206 RSHTTGHS--VVLPGESTDRFTLRVPEELRKKIMA 238

>EME1_SCHPO (Q9C103) Crossover junction endonuclease eme1 (EC 3.1.22.-)|
           (Essential meiotic endonuclease 1)
          Length = 738

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 182 DTPPRSTKCTAATR-FPLILVDDEEDTSPPSELSVLLGVEKNLPDSVLVYL 331
           DTP RST+C +  + F   LV   ED  P    ++ +  +K++ D++L+ L
Sbjct: 47  DTPQRSTQCDSLLKSFSTPLVSGSEDVLPSPRDALNITNKKSVTDNLLLSL 97

>ATL4O_ARATH (Q8W571) RING-H2 finger protein ATL4O precursor|
          Length = 322

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 495 RSYSADHSLXVVRLDRDLERFTLRLPEHVRREMVA 391
           RS S  HS+   R     ERFTLRLP+ V+  ++A
Sbjct: 218 RSNSTGHSMD--RFSDGTERFTLRLPDDVKMRLMA 250

>Y4DW_RHISN (P55422) Hypothetical 22.9 kDa protein y4dW|
          Length = 204

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 289 RRRKEPSRQRPGVPQERWPSAGSLCAAMRALLP 387
           ++RK   R RP +P+E+WP+     +A  A +P
Sbjct: 154 QKRKRGYRPRPSLPKEKWPAEAEHESATSAPVP 186

>YD73_SCHPO (Q10328) Putative homeobox protein C32A11.03c in chromosome I|
          Length = 942

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 191 PRSTKCT-AATRFPLILVDDEEDTSPPSELSVLLGVEKNLPD-SVLVYLRNDGHLPALCA 364
           P+S K    A +   +L +  +DT+PP  +   +G E N+P+ SV ++ +N      L +
Sbjct: 166 PKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSKLIS 225

Query: 365 RR 370
           RR
Sbjct: 226 RR 227

>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 18   TVSF*VNSTAQTPRMRWKDTAL*VQKSCSFSTFEPAG 128
            T+   VNS    P+  WK ++     S S S+ EPAG
Sbjct: 1578 TICTVVNSPGDEPKPHWKPSSSAASSSTSSSSLEPAG 1614


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,349,149
Number of Sequences: 219361
Number of extensions: 1123736
Number of successful extensions: 3978
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3976
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)