ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467899.1| Oryza sativa (japonica cultivar-group), mRNA 119 9e-24
2gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4... 119 9e-24
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
4dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
5dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
6dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 9e-24
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
8dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
9dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
10ref|XM_472662.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
11emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
13dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
14ref|XM_450948.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.43
15ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate am... 44 0.43
16emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-ami... 44 0.43
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
18dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
19gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 42 1.7
20gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.7
21dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.7
22gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like pr... 40 6.7
23ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (C... 40 6.7
24emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.7
25emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.7
26gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.7
27gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.7
28gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequ... 40 6.7
29gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.7
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.7
31gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.7 
>ref|XM_467899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                        
Query: 375  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
            ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 1015 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 956

                                        
Query: 435  accgctccaggtcgcggtcgagccggac 462
            ||||||| ||||||| ||||||||||||
Sbjct: 955  accgctctaggtcgccgtcgagccggac 928



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  acggcggccacgcgcttccct 229
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221
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>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc
            finger-like protein mRNA, complete cds
          Length = 1670

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                        
Query: 375  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
            ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 1002 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 943

                                        
Query: 435  accgctccaggtcgcggtcgagccggac 462
            ||||||| ||||||| ||||||||||||
Sbjct: 942  accgctctaggtcgccgtcgagccggac 915



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  acggcggccacgcgcttccct 229
            |||||||||||||||||||||
Sbjct: 1228 acggcggccacgcgcttccct 1208
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 375      cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
                ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 31987312 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 31987253

                                            
Query: 435      accgctccaggtcgcggtcgagccggac 462
                ||||||| ||||||| ||||||||||||
Sbjct: 31987252 accgctctaggtcgccgtcgagccggac 31987225



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 410      acgtgctccggcagtcgcagcgtgaaccgctcca 443
                |||||||||||||| ||||||| |||||||||||
Sbjct: 21942569 acgtgctccggcagccgcagcgcgaaccgctcca 21942602



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 209      acggcggccacgcgcttccct 229
                |||||||||||||||||||||
Sbjct: 31987538 acggcggccacgcgcttccct 31987518
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 375    cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
              ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 148313 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 148254

                                          
Query: 435    accgctccaggtcgcggtcgagccggac 462
              ||||||| ||||||| ||||||||||||
Sbjct: 148253 accgctctaggtcgccgtcgagccggac 148226



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    acggcggccacgcgcttccct 229
              |||||||||||||||||||||
Sbjct: 148539 acggcggccacgcgcttccct 148519
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1175_B01
          Length = 96191

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                        
Query: 375  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
            ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 7687 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 7628

                                        
Query: 435  accgctccaggtcgcggtcgagccggac 462
            ||||||| ||||||| ||||||||||||
Sbjct: 7627 accgctctaggtcgccgtcgagccggac 7600



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  acggcggccacgcgcttccct 229
            |||||||||||||||||||||
Sbjct: 7913 acggcggccacgcgcttccct 7893
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>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full
            insert sequence
          Length = 1735

 Score =  119 bits (60), Expect = 9e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                        
Query: 375  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtga 434
            ||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||| 
Sbjct: 1015 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 956

                                        
Query: 435  accgctccaggtcgcggtcgagccggac 462
            ||||||| ||||||| ||||||||||||
Sbjct: 955  accgctctaggtcgccgtcgagccggac 928



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  acggcggccacgcgcttccct 229
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                           
Query: 387     cggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtgaaccgctccaggt 446
               |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 6070405 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 6070464

                  
Query: 447     cgc 449
               |||
Sbjct: 6070465 cgc 6070467
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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 387   cggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtgaaccgctccaggt 446
             |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 74904 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 74963

                
Query: 447   cgc 449
             |||
Sbjct: 74964 cgc 74966
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>dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full
           insert sequence
          Length = 1700

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                       
Query: 387 cggccgcgaccatctccctgcgcacgtgctccggcagtcgcagcgtgaaccgctccaggt 446
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 953 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 894

              
Query: 447 cgc 449
           |||
Sbjct: 893 cgc 891
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>ref|XM_472662.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 407 cgcacgtgctccggcagtcgcagcgtgaaccgctc 441
           |||||||||| |||||| |||||||||||||||||
Sbjct: 860 cgcacgtgctgcggcagccgcagcgtgaaccgctc 826
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 407   cgcacgtgctccggcagtcgcagcgtgaaccgctc 441
             |||||||||| |||||| |||||||||||||||||
Sbjct: 14781 cgcacgtgctgcggcagccgcagcgtgaaccgctc 14747
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 407      cgcacgtgctccggcagtcgcagcgtgaaccgctc 441
                |||||||||| |||||| |||||||||||||||||
Sbjct: 22411026 cgcacgtgctgcggcagccgcagcgtgaaccgctc 22410992
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>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0689H05
          Length = 135803

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 410    acgtgctccggcagtcgcagcgtgaaccgctcca 443
              |||||||||||||| ||||||| |||||||||||
Sbjct: 125854 acgtgctccggcagccgcagcgcgaaccgctcca 125887
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>ref|XM_450948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 408 gcacgtgctccggcagtcgcagcgtgaacc 437
           |||||||||| ||||| |||||||||||||
Sbjct: 871 gcacgtgctcgggcagccgcagcgtgaacc 842
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>ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate aminotransferase
           (AN2248.2), mRNA
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 235 cctcgtcgacgatgaagaggac 256
           ||||||||||||||||||||||
Sbjct: 979 cctcgtcgacgatgaagaggac 958
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>emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-amino-n-butyrate
            transaminase
          Length = 2612

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 235  cctcgtcgacgatgaagaggac 256
            ||||||||||||||||||||||
Sbjct: 1556 cctcgtcgacgatgaagaggac 1535
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 408      gcacgtgctccggcagtcgcagcgtgaacc 437
                |||||||||| ||||| |||||||||||||
Sbjct: 17736466 gcacgtgctcgggcagccgcagcgtgaacc 17736495
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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0676H02
          Length = 144252

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 408   gcacgtgctccggcagtcgcagcgtgaacc 437
             |||||||||| ||||| |||||||||||||
Sbjct: 45100 gcacgtgctcgggcagccgcagcgtgaacc 45129
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    gcagtcgcagcgtgaaccgct 440
              |||||||||||||||||||||
Sbjct: 176808 gcagtcgcagcgtgaaccgct 176788
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 139     gtccttgtccacatcgaccgccacagagccgac 171
               |||||| |||||||||||| ||||| |||||||
Sbjct: 2854575 gtccttttccacatcgaccaccacatagccgac 2854607
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    tccccggccgcgaccatctcc 403
              |||||||||||||||||||||
Sbjct: 775773 tccccggccgcgaccatctcc 775753
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>gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like protein mRNA,
           complete cds
          Length = 965

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 agaggacacctctcctccct 269
           ||||||||||||||||||||
Sbjct: 42  agaggacacctctcctccct 23
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>ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13101g) partial
           mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 341 ggccatctgccggctctctg 360
           ||||||||||||||||||||
Sbjct: 269 ggccatctgccggctctctg 250
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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     ggccatctgccggctctctg 360
               ||||||||||||||||||||
Sbjct: 1286829 ggccatctgccggctctctg 1286810
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ctcgtcgacgatgaagagga 255
              ||||||||||||||||||||
Sbjct: 951842 ctcgtcgacgatgaagagga 951823
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>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ccgccgcgttcgacgaaatg 207
           ||||||||||||||||||||
Sbjct: 485 ccgccgcgttcgacgaaatg 504
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ccgccgcgttcgacgaaatg 207
             ||||||||||||||||||||
Sbjct: 65332 ccgccgcgttcgacgaaatg 65351
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>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence
          Length = 10402

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  tcctccctcggagctctccg 281
            ||||||||||||||||||||
Sbjct: 4442 tcctccctcggagctctccg 4423
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     tcgacgatgaagaggacacc 259
               ||||||||||||||||||||
Sbjct: 2110182 tcgacgatgaagaggacacc 2110201
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     tcgacgaaatgcacggcggc 216
               ||||||||||||||||||||
Sbjct: 5053016 tcgacgaaatgcacggcggc 5052997



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 381     gctccccggccgcgaccatc 400
               ||||||||||||||||||||
Sbjct: 2920454 gctccccggccgcgaccatc 2920435
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 430     cgtgaaccgctccaggtcgcggtc 453
               ||||||||||||| ||||||||||
Sbjct: 3159822 cgtgaaccgctcccggtcgcggtc 3159845


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,729,718
Number of Sequences: 3902068
Number of extensions: 2729718
Number of successful extensions: 52522
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51742
Number of HSP's gapped (non-prelim): 780
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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