Clone Information

BLAST Search Result

Clone Name	rbaal18c16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY111770.1\| Zea mays CL63033_1 mRNA sequence	176	6e-41
2	gb\|AC135568.3\| Oryza sativa (japonica cultivar-group) chromosome...	119	1e-23
3	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
4	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	119	1e-23
5	ref\|NM_113582.2\| Arabidopsis thaliana unknown protein AT3G26710 ...	68	4e-08
6	emb\|X98130.1\|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence	68	4e-08
7	gb\|AY140025.1\| Arabidopsis thaliana expressed protein (At3g26710...	68	4e-08
8	gb\|BT006294.1\| Arabidopsis thaliana At3g26710 mRNA, complete cds	68	4e-08
9	gb\|AY087129.1\| Arabidopsis thaliana clone 32010 mRNA, complete s...	68	4e-08
10	dbj\|AB026648.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	68	4e-08
11	ref\|NM_125885.2\| Arabidopsis thaliana unknown protein AT5G64870 ...	44	0.54
12	emb\|BX830484.1\|CNS0A1EH Arabidopsis thaliana Full-length cDNA Co...	44	0.54
13	emb\|BX830969.1\|CNS0A0PW Arabidopsis thaliana Full-length cDNA Co...	44	0.54
14	gb\|AY085257.1\| Arabidopsis thaliana clone 142026 mRNA, complete ...	44	0.54
15	dbj\|AB019236.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	44	0.54
16	emb\|AL845466.4\| Mouse DNA sequence from clone RP23-433P19 on chr...	44	0.54
17	ref\|XM_750455.1\| Aspergillus fumigatus Af293 papillary renal cel...	42	2.1
18	gb\|AC119810.8\| Mus musculus chromosome 7, clone RP23-54G21, comp...	42	2.1
19	gb\|AC119416.15\| Medicago truncatula clone mth2-31m16, complete s...	42	2.1
20	gb\|AF031651.1\|AF031651 Mus musculus VAV (vav) gene, promoter and...	42	2.1
21	emb\|CT025692.15\| Mouse DNA sequence from clone RP23-312G18 on ch...	42	2.1
22	gb\|CP000002.2\| Bacillus licheniformis ATCC 14580, complete genome	40	8.4
23	gb\|AE017333.1\| Bacillus licheniformis DSM 13, complete genome	40	8.4
24	gb\|AC112925.8\| Mus musculus chromosome 5, clone RP23-136I18, com...	40	8.4
25	gb\|AC114649.9\| Mus musculus chromosome 5, clone RP24-150M14, com...	40	8.4
26	ref\|XM_324076.1\| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(...	40	8.4
27	ref\|XM_955262.1\| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(...	40	8.4
28	gb\|AC149299.1\| Populus trichocarpa clone Pop1-037B22, complete s...	40	8.4
29	gb\|AC146191.2\| Pan troglodytes BAC clone RP43-25E3 from 7, compl...	40	8.4
30	gb\|AC163273.4\| Mus musculus chromosome 5, clone RP24-396E18, com...	40	8.4
31	emb\|CR728642.1\|CNS0GP60 Tetraodon nigroviridis full-length cDNA	40	8.4
32	emb\|CR725398.2\|CNS0GMNW Tetraodon nigroviridis full-length cDNA	40	8.4
33	gb\|AC009308.3\| Homo sapiens BAC clone RP11-299P22 from 7, comple...	40	8.4
34	emb\|AL512844.5\| Human DNA sequence from clone RP11-90H3 on chrom...	40	8.4
35	gb\|AC120035.6\| Homo sapiens chromosome 8, clone RP11-1116K10, co...	40	8.4
36	emb\|AL353629.22\| Human DNA sequence from clone RP11-30L4 on chro...	40	8.4
37	gb\|AC116036.3\| Homo sapiens chromosome 3 clone RP11-359I18, comp...	40	8.4
38	dbj\|AK124775.1\| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548	40	8.4
39	gb\|AC107486.4\| Homo sapiens BAC clone RP11-814I21 from 4, comple...	40	8.4
40	emb\|BX649392.6\| Zebrafish DNA sequence from clone DKEY-84J12 in ...	40	8.4
41	gb\|AC135507.2\| Homo sapiens chromosome 3 clone RP11-802O23, comp...	40	8.4
42	gb\|BC091721.1\| Xenopus laevis cDNA clone IMAGE:4173501	40	8.4
43	emb\|AL158801.4\|CNS01RGN Human chromosome 14 DNA sequence BAC R-6...	40	8.4
44	emb\|BX537600.1\|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 ...	40	8.4
45	emb\|AL137938.1\|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (...	40	8.4
46	gb\|L07391.1\|NEUNIT6X Neurospora crassa nitrite reductase (nit-6)...	40	8.4
47	dbj\|AB070234.1\| Branchiostoma floridae EF-1a gene for EF-1a part...	40	8.4

>gb|AY111770.1| Zea mays CL63033_1 mRNA sequence
          Length = 540

 Score =  176 bits (89), Expect = 6e-41
 Identities = 181/211 (85%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                       
Query: 274 gtcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccc 333
           |||||||||| || || |||||||| || | ||||||||||||||| | |||||| ||| 
Sbjct: 242 gtcatgtctcaaagatgcccttcacatagaccatccccttctcgctgaacttgaggtcct 183

                                                                       
Query: 334 tcctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttcc 393
           ||||||||||||| ||||| || || |||||| |||| || |||||||||||   |||||
Sbjct: 182 tcctcatctgctcaacctggacgtcatcgccctgcacaaggatctcggacac---gttcc 126

                                                                       
Query: 394 cgtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagt 453
           |||||||||| | || |||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 125 cgtcatcggataggatcatcttgaccttgatctcttctttccttgacgctttcgtccagt 66

                                          
Query: 454 agtacactcccgccaaggggcttaaggtcat 484
           ||||| |||||||||||||||| | ||||||
Sbjct: 65  agtacgctcccgccaaggggctcagggtcat 35

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>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0078F08, complete sequence
          Length = 165440

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                        
Query: 464  cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 523
            |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 8190 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 8131

                                                            
Query: 524  tgacagaacaagcccgacgctccccaggctaatgacggtgcagaaggt 571
            ||| |||||||| |||||||| || |||||||||  ||||||||||||
Sbjct: 8130 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 8083



 Score =  113 bits (57), Expect = 7e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 275  tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 334
            |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 8460 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 8401

                                                                        
Query: 335  cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 394
            |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 8400 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 8344

                                                                        
Query: 395  gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 454
            |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 8343 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 8284

               
Query: 455  gta 457
            |||
Sbjct: 8283 gta 8281



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  aagccaagacacagatttgcccgt 159
            ||||||||| ||||||||||||||
Sbjct: 8581 aagccaagatacagatttgcccgt 8558

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                            
Query: 464      cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 523
                |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 18428875 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18428816

                                                                
Query: 524      tgacagaacaagcccgacgctccccaggctaatgacggtgcagaaggt 571
                ||| |||||||| |||||||| || |||||||||  ||||||||||||
Sbjct: 18428815 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 18428768



 Score =  113 bits (57), Expect = 7e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                            
Query: 275      tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 334
                |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 18429145 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18429086

                                                                            
Query: 335      cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 394
                |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 18429085 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18429029

                                                                            
Query: 395      gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 454
                |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 18429028 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18428969

                   
Query: 455      gta 457
                |||
Sbjct: 18428968 gta 18428966



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 136      aagccaagacacagatttgcccgt 159
                ||||||||| ||||||||||||||
Sbjct: 18429266 aagccaagatacagatttgcccgt 18429243

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                            
Query: 464      cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 523
                |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 18588276 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18588217

                                                                
Query: 524      tgacagaacaagcccgacgctccccaggctaatgacggtgcagaaggt 571
                ||| |||||||| |||||||| || |||||||||  ||||||||||||
Sbjct: 18588216 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 18588169



 Score =  113 bits (57), Expect = 7e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                            
Query: 275      tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 334
                |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 18588546 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18588487

                                                                            
Query: 335      cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 394
                |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 18588486 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18588430

                                                                            
Query: 395      gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 454
                |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 18588429 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18588370

                   
Query: 455      gta 457
                |||
Sbjct: 18588369 gta 18588367



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 136      aagccaagacacagatttgcccgt 159
                ||||||||| ||||||||||||||
Sbjct: 18588667 aagccaagatacagatttgcccgt 18588644

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>ref|NM_113582.2| Arabidopsis thaliana unknown protein AT3G26710 mRNA, complete cds
          Length = 972

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 410 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 690 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 637

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>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence
          Length = 81493

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 410   catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
             ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 66654 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 66601

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>gb|AY140025.1| Arabidopsis thaliana expressed protein (At3g26710) mRNA, complete
           cds
          Length = 908

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 410 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 691 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 638

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>gb|BT006294.1| Arabidopsis thaliana At3g26710 mRNA, complete cds
          Length = 804

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 410 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 666 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 613

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>gb|AY087129.1| Arabidopsis thaliana clone 32010 mRNA, complete sequence
          Length = 918

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 410 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 685 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 632

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>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15
          Length = 43481

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 410   catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 463
             ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 24416 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 24363

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>ref|NM_125885.2| Arabidopsis thaliana unknown protein AT5G64870 mRNA, complete cds
          Length = 1754

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 412 tcttcaccttgatctcctcttt 433
           ||||||||||||||||||||||
Sbjct: 764 tcttcaccttgatctcctcttt 743

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>emb|BX830484.1|CNS0A1EH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB84ZF09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1586

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 412 tcttcaccttgatctcctcttt 433
           ||||||||||||||||||||||
Sbjct: 742 tcttcaccttgatctcctcttt 721

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>emb|BX830969.1|CNS0A0PW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS43ZD06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1673

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 412 tcttcaccttgatctcctcttt 433
           ||||||||||||||||||||||
Sbjct: 742 tcttcaccttgatctcctcttt 721

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>gb|AY085257.1| Arabidopsis thaliana clone 142026 mRNA, complete sequence
          Length = 1753

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 412 tcttcaccttgatctcctcttt 433
           ||||||||||||||||||||||
Sbjct: 764 tcttcaccttgatctcctcttt 743

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>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3
          Length = 81494

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   tcttcaccttgatctcctcttt 433
             ||||||||||||||||||||||
Sbjct: 27863 tcttcaccttgatctcctcttt 27884

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>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete
              sequence
          Length = 197839

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 131    tctcaaagccaagacacagatt 152
              ||||||||||||||||||||||
Sbjct: 187714 tctcaaagccaagacacagatt 187693

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>ref|XM_750455.1| Aspergillus fumigatus Af293 papillary renal cell
           carcinoma-associated protein (Afu2g12160) partial mRNA
          Length = 1239

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 413 cttcaccttgatctcctctttcctc 437
           ||||| |||||||||||||||||||
Sbjct: 564 cttcaacttgatctcctctttcctc 540

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>gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, complete sequence
          Length = 185939

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 283   cgaatatccccttcacgtata 303
             |||||||||||||||||||||
Sbjct: 40474 cgaatatccccttcacgtata 40494

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>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence
          Length = 120889

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   aaaaacatctctttttctcaa 136
             |||||||||||||||||||||
Sbjct: 23995 aaaaacatctctttttctcaa 23975

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>gb|AF031651.1|AF031651 Mus musculus VAV (vav) gene, promoter and partial cds
          Length = 1000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 acccaccctcaactcccctct 190
           |||||||||||||||||||||
Sbjct: 23  acccaccctcaactcccctct 43

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>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete
              sequence
          Length = 177741

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    acccaccctcaactcccctct 190
              |||||||||||||||||||||
Sbjct: 161446 acccaccctcaactcccctct 161466

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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    aaagcctggtttgaactgcttgct 241
              ||||||| ||||||||||||||||
Sbjct: 710689 aaagccttgtttgaactgcttgct 710666

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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    aaagcctggtttgaactgcttgct 241
              ||||||| ||||||||||||||||
Sbjct: 710473 aaagccttgtttgaactgcttgct 710450

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>gb|AC112925.8| Mus musculus chromosome 5, clone RP23-136I18, complete sequence
          Length = 195433

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    tcaccttgatctcctctttc 434
              ||||||||||||||||||||
Sbjct: 123923 tcaccttgatctcctctttc 123942

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>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence
          Length = 154765

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   tcaccttgatctcctctttc 434
             ||||||||||||||||||||
Sbjct: 49316 tcaccttgatctcctctttc 49335

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>ref|XM_324076.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1)
            partial mRNA
          Length = 3531

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cgctcatcttgagctccctcctca 339
            ||||| ||||||||||||||||||
Sbjct: 1231 cgctcttcttgagctccctcctca 1208

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>ref|XM_955262.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1)
            partial mRNA
          Length = 3531

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cgctcatcttgagctccctcctca 339
            ||||| ||||||||||||||||||
Sbjct: 1231 cgctcttcttgagctccctcctca 1208

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>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    accttgatctcctctttcct 436
              ||||||||||||||||||||
Sbjct: 125193 accttgatctcctctttcct 125174

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>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence
          Length = 185364

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 293    cttcacgtatatcatccccttctc 316
              ||||| ||||||||||||||||||
Sbjct: 137669 cttcaagtatatcatccccttctc 137692

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>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence
          Length = 136964

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    tcaccttgatctcctctttc 434
              ||||||||||||||||||||
Sbjct: 133057 tcaccttgatctcctctttc 133076

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>emb|CR728642.1|CNS0GP60 Tetraodon nigroviridis full-length cDNA
          Length = 1943

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 557  gacggtgcagaaggtcagca 576
            ||||||||||||||||||||
Sbjct: 1264 gacggtgcagaaggtcagca 1283

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>emb|CR725398.2|CNS0GMNW Tetraodon nigroviridis full-length cDNA
          Length = 1942

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 557  gacggtgcagaaggtcagca 576
            ||||||||||||||||||||
Sbjct: 1262 gacggtgcagaaggtcagca 1281

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>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence
          Length = 108182

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 293   cttcacgtatatcatccccttctc 316
             ||||| ||||||||||||||||||
Sbjct: 78131 cttcaagtatatcatccccttctc 78154

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>emb|AL512844.5| Human DNA sequence from clone RP11-90H3 on chromosome 1 Contains two
             matrin 3 (MATR3) pseudogenes, complete sequence
          Length = 159017

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tacaaacagggtacagatac 74
             ||||||||||||||||||||
Sbjct: 71770 tacaaacagggtacagatac 71789

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>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   accagaatctcggacacatt 388
             ||||||||||||||||||||
Sbjct: 90041 accagaatctcggacacatt 90022

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>emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chromosome 9q22.1-22.33
              Contains the 5' end of a novel gene, two novel genes, the
              C9orf10 gene for chromosome 9 open reading frame 10, the 5'
              end of the PHF2 gene for PHD finger protein 2 and three CpG
              islands, complete sequence
          Length = 170845

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 582    gcctgagagctgcttggtgtcatt 605
              |||||||||||| |||||||||||
Sbjct: 132284 gcctgagagctggttggtgtcatt 132307

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>gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, complete sequence
          Length = 178119

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   tactgaaacccaccctcaactccc 186
             ||||||| ||||||||||||||||
Sbjct: 35493 tactgaaccccaccctcaactccc 35516

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>dbj|AK124775.1| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548
          Length = 3842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 163  tactgaaacccaccctcaactccc 186
            ||||||| ||||||||||||||||
Sbjct: 1675 tactgaaccccaccctcaactccc 1698

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>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence
          Length = 59463

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   accctcaactcccctctcaccttc 197
             |||||||||||||||| |||||||
Sbjct: 56705 accctcaactcccctcccaccttc 56682

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>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   gggcttaaggtcataagcca 490
             ||||||||||||||||||||
Sbjct: 18321 gggcttaaggtcataagcca 18302

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>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence
          Length = 171175

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    tactgaaacccaccctcaactccc 186
              ||||||| ||||||||||||||||
Sbjct: 123851 tactgaaccccaccctcaactccc 123874

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>gb|BC091721.1| Xenopus laevis cDNA clone IMAGE:4173501
          Length = 2895

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 410  catcttcaccttgatctcct 429
            ||||||||||||||||||||
Sbjct: 2695 catcttcaccttgatctcct 2676

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>emb|AL158801.4|CNS01RGN Human chromosome 14 DNA sequence BAC R-665C16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205860

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tctctttttctcaaagccaa 142
             ||||||||||||||||||||
Sbjct: 69634 tctctttttctcaaagccaa 69653

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>emb|BX537600.1|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 (from clone DKFZp686O16145)
          Length = 4237

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 163 tactgaaacccaccctcaactccc 186
           ||||||| ||||||||||||||||
Sbjct: 789 tactgaaccccaccctcaactccc 812

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>emb|AL137938.1|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223)
          Length = 3764

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 163 tactgaaacccaccctcaactccc 186
           ||||||| ||||||||||||||||
Sbjct: 213 tactgaaccccaccctcaactccc 236

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>gb|L07391.1|NEUNIT6X Neurospora crassa nitrite reductase (nit-6) gene, exons 1-4
          Length = 4800

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cgctcatcttgagctccctcctca 339
            ||||| ||||||||||||||||||
Sbjct: 2184 cgctcttcttgagctccctcctca 2161

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>dbj|AB070234.1| Branchiostoma floridae EF-1a gene for EF-1a partial cds
          Length = 3371

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 571  tcagcaatgctgcctgagag 590
            ||||||||||||||||||||
Sbjct: 2332 tcagcaatgctgcctgagag 2313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,800,446
Number of Sequences: 3902068
Number of extensions: 4800446
Number of successful extensions: 86705
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86527
Number of HSP's gapped (non-prelim): 174
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result