ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7c24 |
|---|---|
| Clone Library Name | barley_pub |
>EWG_DROME (Q24312) DNA-binding protein Ewg (Protein erect wing)| Length = 733 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 355 ATVQDPHTVTEGGGHAPMTVMFQHTTAGAILQGTEDG 245 AT+Q ++T+ GH MTV T G I TEDG Sbjct: 590 ATIQTVQSLTDVNGHENMTVDLTETQDGQIYITTEDG 626
>METK_BACHD (Q9K7Q9) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 399 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 235 AAYHHAGATPVAAPWRQKNQGAVLRRK 155 AAY H G T V PW Q ++ +LR++ Sbjct: 372 AAYGHFGRTDVELPWEQTDKAEILRQQ 398
>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1206 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 355 ATVQDPHTVTEGGGHAPMTVMFQHTTAGAILQGTEDGVTLAAYHHAG 215 A + +T+ G H P+ V T G +L G+E G LAA G Sbjct: 179 AVLGSRRAMTQAGRHIPVFVHVTVETTGTMLLGSEIGAALAAVEPLG 225
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 28.9 bits (63), Expect = 3.2 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 7/87 (8%) Frame = +2 Query: 56 TSSMNCGCAHSFL*NASSQSQVTCCAMPCFQHILSA----ENSSLILLTPGSSYGSSSCV 223 + S C C F S VTC PCF L +S+ + P GS+ Sbjct: 291 SGSFECACPRGFYGLRCEVSGVTCADGPCFNGGLCVGGEDPDSAYVCHCPPGFQGSN--- 347 Query: 224 VIRCESNSVFCSL---ENSACCSMLKH 295 CE CSL +N C L H Sbjct: 348 ---CEKRVDRCSLQPCQNGGLCLDLGH 371
>DLL3_RAT (O88671) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 589 Score = 28.9 bits (63), Expect = 3.2 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Frame = +2 Query: 62 SMNCGCAHSFL*NASSQSQVTCCAMPCFQHILSA----ENSSLILLTPGSSYGSSSCVVI 229 S C C F S VTC PCF L +S+ + P + GS+ Sbjct: 297 SFECACPRGFYGPRCEVSGVTCADGPCFNGGLCVGGEDPDSAYVCHCPPAFQGSN----- 351 Query: 230 RCESNSVFCSL---ENSACCSMLKH 295 CE CSL +N C L H Sbjct: 352 -CERRVDRCSLQPCQNGGLCLDLGH 375
>METK_BACSK (Q5WDZ8) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 405 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 235 AAYHHAGATPVAAPWRQKNQGAVLRRKDMLK 143 AAY H G T V PW ++ A L ++D+LK Sbjct: 372 AAYGHFGRTDVPLPWEATDKAAAL-KEDVLK 401
>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein| 7) (Protein archipelago) Length = 1326 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 167 NSSLILLTPGSSYGSSSCVVIRCESNSVFCSLENSACCS 283 + S L GSS G+SSC R S+S S+E+S C+ Sbjct: 450 SKSTAKLNLGSSLGASSCSQHRSGSSSTSKSMESSTSCT 488
>METK_MYCPA (Q741G5) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 403 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 235 AAYHHAGATPVAAPWRQKNQGAVLRR 158 AAY H G T V PW Q N+ L+R Sbjct: 376 AAYGHFGRTDVELPWEQLNKVDELKR 401
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +2 Query: 98 NASSQSQVTCCAMPCFQHILSAENSSLILLTPGSSYGSSSCVVIRCESNSVFCSLENS 271 N SS+ + +PCFQH+L + S++ T S ++ C+ E N SL+NS Sbjct: 1215 NLSSEDE----ELPCFQHLLFGKVSNIPSQTTRHSTVATECLSKNTEEN--LLSLKNS 1266
>TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen)| Length = 1387 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +2 Query: 38 SAPWRRTSSMNCGCAHSFL*NASSQSQVTCCAMPCFQHILSAENSS 175 S+ + +S++ GCAHS + SS++ ++ MPC S SS Sbjct: 740 SSSFSSAASISFGCAHSTSTSFSSEASISFGGMPCTSASFSGGVSS 785
>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3110 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/55 (29%), Positives = 22/55 (40%) Frame = +2 Query: 188 TPGSSYGSSSCVVIRCESNSVFCSLENSACCSMLKHNGHGSMTSAFCNCMGILNG 352 TPG + G+ CV +C +S C E S C + H GI+ G Sbjct: 1409 TPGPTLGT--CVPCQCNGHSSLCDPETSICQNCQHHTAGDFCERCALGYYGIVKG 1461
>METK_MYCLE (Q9CCQ4) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 403 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 235 AAYHHAGATPVAAPWRQKNQGAVLRR 158 AAY H G T V PW Q N+ L+R Sbjct: 376 AAYGHFGRTDVELPWEQLNKVDDLKR 401
>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 618 Score = 28.1 bits (61), Expect = 5.5 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Frame = +2 Query: 62 SMNCGCAHSFL*NASSQSQVTCCAMPCFQHIL----SAENSSLILLTPGSSYGSSSCVVI 229 S C C F S VTC PCF L + +S+ I P GS+ Sbjct: 295 SFECTCPRGFYGLRCEVSGVTCADGPCFNGGLCVGGADPDSAYICHCPPGFQGSN----- 349 Query: 230 RCESNSVFCSLE---NSACCSMLKH 295 CE CSL+ N C L H Sbjct: 350 -CEKRVDRCSLQPCRNGGLCLDLGH 373
>NLTP4_ORYSA (Q42976) Nonspecific lipid-transfer protein 4 precursor (LTP 4)| Length = 121 Score = 28.1 bits (61), Expect = 5.5 Identities = 22/77 (28%), Positives = 30/77 (38%) Frame = +2 Query: 101 ASSQSQVTCCAMPCFQHILSAENSSLILLTPGSSYGSSSCVVIRCESNSVFCSLENSACC 280 A S VT PC +++ E SS SS C +R + S + C Sbjct: 29 AVSCGDVTSSIAPCLSYVMGRE----------SSPSSSCCSGVRTLNGKASSSADRRTAC 78 Query: 281 SMLKHNGHGSMTSAFCN 331 S LK +M S+F N Sbjct: 79 SCLK-----NMASSFRN 90
>DCDA_ACTPA (O69203) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 437 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 12/53 (22%) Frame = -3 Query: 331 VTEGGGHAPMTVMFQHTTAGAIL-------QGTEDGVTLA-----AYHHAGAT 209 V GG AP+TV+ +H AG +L + G LA AYHHA A+ Sbjct: 350 VRRGGRRAPVTVVGRHCEAGDVLAEDVPLPEDVRAGDLLAVPVTGAYHHALAS 402
>Y043_RICCN (Q92JM4) UPF0301 protein RC0043| Length = 189 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 349 VQDPHTVTEGGGHAPMTVMFQHTTAGAI 266 V PH +T+G H + M HT GAI Sbjct: 15 VATPHVITKGIYHKSLIYMLSHTEEGAI 42
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 28.1 bits (61), Expect = 5.5 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = +2 Query: 83 HSFL*NASSQSQVTCCAMPCFQHILSAENSSLILL------TPGSSYGSSSCVVIRCESN 244 H+F ++SS + T A +H E+S L + TP SS S+SC S Sbjct: 633 HNFFTSSSSSNTATTAANKLEEHSDKPEDSPLPIASSISGSTPASSITSTSCTSSSSSSA 692 Query: 245 SV--FCSLENS 271 S+ CS NS Sbjct: 693 SMSSSCSSSNS 703
>SLIT_DROME (P24014) Protein slit precursor [Contains: Protein slit N-product;| Protein slit C-product] Length = 1504 Score = 27.7 bits (60), Expect = 7.2 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Frame = +2 Query: 14 NXRCLMRLSAPWRRTSSMNCGCAHSFL*NASSQSQVTCCAMPCFQHILSAENSSLILLTP 193 N C + A W R S+N G A S V +P + S+ENS L Sbjct: 680 NCNCHLAWFAEWLRKKSLNGGAARCGA--PSKVRDVQIKDLPHSEFKCSSENSEGCL--- 734 Query: 194 GSSYGSSSC----VVIRCESNSV 250 G Y SC V+RC N + Sbjct: 735 GDGYCPPSCTCTGTVVRCSRNQL 757
>METK_GEOKA (Q5KW02) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 403 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 Query: 235 AAYHHAGATPVAAPWRQKNQGAVLRRK 155 AAY H G T + PW + ++ A+L+ + Sbjct: 370 AAYGHFGRTDIDLPWERTDKAALLKEQ 396
>TLD_DROME (P25723) Dorsal-ventral patterning protein tolloid precursor (EC| 3.4.24.-) Length = 1067 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +2 Query: 239 SNSVFCSLENSACCSMLKHNGHGSMTSAF---CNCMGIL 346 +N ++ +++N CCS L NG+G + C GI+ Sbjct: 191 ANYIYFTVKNCGCCSFLGKNGNGRQPISIGRNCEKFGII 229
>KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-associated protein| 9.8) (Ultrahigh sulfur keratin-associated protein 9.8) Length = 159 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +2 Query: 104 SSQSQVTCCAMPCFQHILSAENSSLILLTPGSSYG-SSSCVVIRC 235 +S Q +CC+ PC Q + S GSS G SSSC + C Sbjct: 63 TSCCQPSCCSTPCCQPTCCGQTSC------GSSCGQSSSCAPVYC 101
>LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3106 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/55 (29%), Positives = 22/55 (40%) Frame = +2 Query: 188 TPGSSYGSSSCVVIRCESNSVFCSLENSACCSMLKHNGHGSMTSAFCNCMGILNG 352 TPG + G+ CV +C +S C E S C + H GI+ G Sbjct: 1405 TPGPTLGT--CVPCQCNGHSSQCDPETSVCQNCQHHTAGDFCERCALGYYGIVRG 1457
>ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.11.30)| (ACTR-IC) (Activin receptor-like kinase 7) (ALK-7) Length = 493 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +2 Query: 152 ILSAENSSLILLTPGSSYGSS-SCVVIRCESNSVFCSLENSACCSMLKHNG 301 + SA +L+LL + CV + C+S++ C E + S++ NG Sbjct: 5 LCSALRQALLLLAAAAELSPGLKCVCLLCDSSNFTCQTEGACWASVMLTNG 55
>KTXA_KLULA (P09805) Killer toxin alpha/beta subunits precursor (RF2 protein)| [Contains: Killer toxin alpha subunit; Killer toxin beta subunit (Endochitinase) (EC 3.2.1.14)] Length = 1146 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/50 (30%), Positives = 18/50 (36%) Frame = +2 Query: 185 LTPGSSYGSSSCVVIRCESNSVFCSLENSACCSMLKHNGHGSMTSAFCNC 334 L PG Y ++ C + C S FC L C G F NC Sbjct: 322 LAPGEKY-NAKCPLNACCSEFGFCGLTKDYCDKKSSTTGAPGTDGCFSNC 370
>FAS1_SCHPO (Q9UUG0) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:| 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2. Length = 2073 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 207 GVAPAW*YAARVTPSSVPWRIAPAV 281 G+ P W A +TP+SVPW+ A+ Sbjct: 578 GLPPLW--VAGMTPTSVPWQFCSAI 600
>ELF1_YEAST (P36053) Transcription elongation factor 1| Length = 145 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 242 NSVFCSLENSACCSMLKHNGHGSMTSAFC 328 N +FC+ E S C++ K N G+++ C Sbjct: 24 NCLFCNHEKSVSCTLDKKNSIGTLSCKIC 52
>BID_RAT (Q9JLT6) BH3-interacting domain death agonist (BID) (p22 BID)| [Contains: BH3-interacting domain death agonist p15 (p15 BID); BH3-interacting domain death agonist p13 (p13 BID); BH3-interacting domain death agonist p11 (p11 BID)] Length = 196 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = +1 Query: 1 KALCKXQVLDEVERSLETDLEHE--LRLCA*LSLERLFAIAGDLLRDALLSAYPFCGEQL 174 K C + LDEV+ S D+E++ + + L +++ + A LLRD + F + L Sbjct: 124 KRNCLAKALDEVKTSFPRDMENDKAMLIMTMLLAKKVASHAPSLLRDVFRTTVNFINQNL 183
>YCBR_BACSU (P42250) Hypothetical protein ycbR (ORF17)| Length = 243 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 88 LSLERLFAIAGDLLRDALLSAYPFCGEQLLDSSDAREQ 201 L +E + I+ D L DALL+ +PF ++ + REQ Sbjct: 187 LHIEEIDRISDDELYDALLAEFPFWLKEAKEKGIVREQ 224
>ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD)| Length = 593 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -3 Query: 340 PHTVTEGGGHAPMTVMFQHTTAGAILQGTED-GVTLAAYHHAGATPVAAPWRQKNQGAV 167 P V GG P + + +LQG E +H+ G AA W QK+ G+V Sbjct: 419 PTVVQLVGGEVPQDRVIDGHSLVPLLQGAEARSAHEFLFHYCGQHLHAARWHQKDSGSV 477 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,746,756 Number of Sequences: 219361 Number of extensions: 682910 Number of successful extensions: 2614 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2613 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
