ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 109 6e-21
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 6e-21
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 109 6e-21
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 6e-21
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 6e-21
6gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.30
7gb|AY105790.1| Zea mays PCO079761 mRNA sequence 44 0.30
8gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, compl... 42 1.2
9gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.2
10gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosom... 40 4.7
11gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 40 4.7
12gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds 40 4.7
13gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo... 40 4.7
14dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 4.7
15dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 4.7
16ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA 40 4.7
17emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 4.7 
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 194 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 253
           |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 817 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 758

                                                                       
Query: 254 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 313
           |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 757 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 698

                                                  
Query: 314 acctccgccttctgtaactgtatggggatcttgaacggt 352
           |||||   |||||||||| |||||| |||||||||||||
Sbjct: 697 acctctctcttctgtaacggtatggagatcttgaacggt 659



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 36  tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 95
           |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 969 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 910

                       
Query: 96  agaacgcctctt 107
           |||| |||||||
Sbjct: 909 agaatgcctctt 898
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 194     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 253
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8740278 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8740337

                                                                           
Query: 254     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 313
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8740338 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8740397

                                                      
Query: 314     acctccgccttctgtaactgtatggggatcttgaacggt 352
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8740398 acctctctcttctgtaacggtatggagatcttgaacggt 8740436



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 36      tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 95
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8740126 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8740185

                           
Query: 96      agaacgcctctt 107
               |||| |||||||
Sbjct: 8740186 agaatgcctctt 8740197
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                         
Query: 194   gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 253
             |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 83929 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 83988

                                                                         
Query: 254   tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 313
             |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 83989 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 84048

                                                    
Query: 314   acctccgccttctgtaactgtatggggatcttgaacggt 352
             |||||   |||||||||| |||||| |||||||||||||
Sbjct: 84049 acctctctcttctgtaacggtatggagatcttgaacggt 84087



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 36    tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 95
             |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 83777 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 83836

                         
Query: 96    agaacgcctctt 107
             |||| |||||||
Sbjct: 83837 agaatgcctctt 83848
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 194     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 253
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8738113 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8738172

                                                                           
Query: 254     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 313
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8738173 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8738232

                                                      
Query: 314     acctccgccttctgtaactgtatggggatcttgaacggt 352
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8738233 acctctctcttctgtaacggtatggagatcttgaacggt 8738271



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 36      tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 95
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8737961 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8738020

                           
Query: 96      agaacgcctctt 107
               |||| |||||||
Sbjct: 8738021 agaatgcctctt 8738032
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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                        
Query: 194  gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 253
            |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 1076 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 1017

                                                                        
Query: 254  tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 313
            |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 1016 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 957

                                                   
Query: 314  acctccgccttctgtaactgtatggggatcttgaacggt 352
            |||||   |||||||||| |||||| |||||||||||||
Sbjct: 956  acctctctcttctgtaacggtatggagatcttgaacggt 918



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 36   tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 95
            |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 1228 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 1169

                        
Query: 96   agaacgcctctt 107
            |||| |||||||
Sbjct: 1168 agaatgcctctt 1157
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 118    ggtgacctgctgcgcgatgccttgct 143
              ||||||||| ||||||||||||||||
Sbjct: 352154 ggtgacctggtgcgcgatgccttgct 352179
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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 36   tgagcgctccctggagacggacctcgagcatgaactgcggct 77
            ||||||||||||||| || ||||| ||| | |||||||||||
Sbjct: 1260 tgagcgctccctggacacagacctggagtacgaactgcggct 1219
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>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    gaacagctccttgattcttct 186
              |||||||||||||||||||||
Sbjct: 102961 gaacagctccttgattcttct 102941
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 19      caggtgcttgatgaggttgag 39
               |||||||||||||||||||||
Sbjct: 1782657 caggtgcttgatgaggttgag 1782677
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>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   taactccgtcttctgttcct 260
             ||||||||||||||||||||
Sbjct: 94059 taactccgtcttctgttcct 94040
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  tttcagcatatcctttctgc 162
            ||||||||||||||||||||
Sbjct: 3500 tttcagcatatcctttctgc 3519
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>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  taactccgtcttctgttcct 260
            ||||||||||||||||||||
Sbjct: 1627 taactccgtcttctgttcct 1608
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>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  taactccgtcttctgttcct 260
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
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>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 taactccgtcttctgttcct 260
           ||||||||||||||||||||
Sbjct: 23  taactccgtcttctgttcct 4
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>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 taactccgtcttctgttcct 260
           ||||||||||||||||||||
Sbjct: 987 taactccgtcttctgttcct 968
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>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  taactccgtcttctgttcct 260
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 139    ttgctttcagcatatcctttctgc 162
              |||||||||||||||||| |||||
Sbjct: 156247 ttgctttcagcatatcctctctgc 156224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,058,440
Number of Sequences: 3902068
Number of extensions: 2058440
Number of successful extensions: 35871
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35764
Number of HSP's gapped (non-prelim): 102
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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