ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL10_HCMVA (P16843) Hypothetical protein UL10 30 4.9
2GLYA2_PSEAE (Q9I138) Serine hydroxymethyltransferase 2 (EC 2.1.2... 29 6.4
3ZN679_HUMAN (Q8IYX0) Zinc finger protein 679 29 8.3

>UL10_HCMVA (P16843) Hypothetical protein UL10|
          Length = 258

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 424 SLVETATRQIKPGNGFARLMTITTPQKHEKGINPTQSALPKDENV 290
           SL+   T   KPG         TTP KH +    T+   P+D NV
Sbjct: 140 SLISRTTTTRKPGQKTTLSRLKTTPNKHTQHKRSTRRTSPRDYNV 184



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>GLYA2_PSEAE (Q9I138) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 418

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 446 FHEGECEVSSGNCNQTNQTWQWICEVDDDYNSPEA*E 336
           F EGEC   +G          WIC++ DD ++PE  E
Sbjct: 374 FREGECRELAG----------WICDILDDIDNPEVGE 400



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>ZN679_HUMAN (Q8IYX0) Zinc finger protein 679|
          Length = 411

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 437 GECEVSSGNCNQTNQ 393
           GECEV  G CN+ NQ
Sbjct: 132 GECEVQKGGCNEVNQ 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,600,863
Number of Sequences: 219361
Number of extensions: 1202094
Number of successful extensions: 3090
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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