ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17m20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSHR_CHICK (P55167) Melanocyte-stimulating hormone receptor (MSH... 28 8.8

>MSHR_CHICK (P55167) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 314

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 82  SNGYCTCFFSFFTL 123
           +N +CTCFFS+F L
Sbjct: 266 TNPFCTCFFSYFNL 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,271,648
Number of Sequences: 219361
Number of extensions: 356175
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top