ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17m16 |
|---|---|
| Clone Library Name | barley_pub |
>AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 182 bits (462), Expect = 6e-46 Identities = 78/140 (55%), Positives = 119/140 (85%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +F L+VNKQGQTRL++YYEH+ +++R LE E+++ CL+R+++QCSF+E++++K++YR+Y Sbjct: 3 KFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGC Sbjct: 63 AALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGC 122 Query: 240 IVETSKQNILAPIQLMEKTS 181 IVET++ ILAP+ +++K S Sbjct: 123 IVETNRARILAPLLILDKMS 142
>AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 179 bits (453), Expect = 7e-45 Identities = 78/140 (55%), Positives = 117/140 (83%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +F L+VNKQGQTRL++YYEH+ +++R LE E+ + CL+R+ +QCSF+E++++K++YR+Y Sbjct: 3 KFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGC Sbjct: 63 AALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGC 122 Query: 240 IVETSKQNILAPIQLMEKTS 181 IVET++ ILAP+ +++K S Sbjct: 123 IVETNRARILAPLLILDKLS 142
>AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 160 Score = 135 bits (340), Expect = 9e-32 Identities = 62/134 (46%), Positives = 99/134 (73%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RY Sbjct: 2 QFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRY 61 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 ASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G Sbjct: 62 ASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGE 121 Query: 240 IVETSKQNILAPIQ 199 + ETSK+N+L I+ Sbjct: 122 VQETSKKNVLKAIE 135
>AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 157 Score = 135 bits (340), Expect = 9e-32 Identities = 62/134 (46%), Positives = 99/134 (73%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RY Sbjct: 2 QFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRY 61 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 ASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G Sbjct: 62 ASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGE 121 Query: 240 IVETSKQNILAPIQ 199 + ETSK+N+L I+ Sbjct: 122 VQETSKKNVLKAIE 135
>AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 134 bits (336), Expect = 3e-31 Identities = 70/138 (50%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRY 421 F+L+ N+QG+TRLA++Y S +E+ L+GEI R R + Q +FVE RN+KVVYRRY Sbjct: 4 FILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRY 63 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 64 AGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGE 123 Query: 240 IVETSKQNILAPIQLMEK 187 I ETSKQ +L ++ ++K Sbjct: 124 IEETSKQVVLTRLEHLDK 141
>AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 132 bits (332), Expect = 8e-31 Identities = 62/134 (46%), Positives = 97/134 (72%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RY Sbjct: 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 ASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G Sbjct: 63 ASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGD 122 Query: 240 IVETSKQNILAPIQ 199 + +TSK+++L I+ Sbjct: 123 VQDTSKKSVLKAIE 136
>AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 132 bits (332), Expect = 8e-31 Identities = 62/134 (46%), Positives = 97/134 (72%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RY Sbjct: 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 ASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G Sbjct: 63 ASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGD 122 Query: 240 IVETSKQNILAPIQ 199 + +TSK+++L I+ Sbjct: 123 VQDTSKKSVLKAIE 136
>AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 131 bits (330), Expect = 1e-30 Identities = 67/138 (48%), Positives = 97/138 (70%), Gaps = 1/138 (0%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRY 421 F+L+ N+QG+TRLA++Y S +++ L+GE+ R R + Q +FVE RN K+VYRRY Sbjct: 4 FILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRY 63 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 64 AGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGE 123 Query: 240 IVETSKQNILAPIQLMEK 187 I ETSKQ +L ++ ++K Sbjct: 124 IEETSKQVVLTRLEHLDK 141
>AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adaptin) (Clathrin| coat assembly protein AP19) (Clathrin coat-associated protein AP19) (Golgi adaptor AP-1 19 kDa adaptin) (HA1 19 kDa subunit) (Clathrin assembly protein complex 1 small chain) Length = 156 Score = 128 bits (321), Expect = 1e-29 Identities = 62/139 (44%), Positives = 100/139 (71%), Gaps = 2/139 (1%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +++LLV++QG+ RL ++Y +S E+ + ++ LAR + C+ +E+ ++KVVY+RY Sbjct: 5 KYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKRY 64 Query: 420 ASLFFLVGVDND-ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM-N 247 ASL+F+VG+ D +NEL LE IH VETMD +FGNVCELDI+F+ KV+ +L EM+M + Sbjct: 65 ASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMCD 124 Query: 246 GCIVETSKQNILAPIQLME 190 G I E+S++ +L + +M+ Sbjct: 125 GSIAESSRKEVLHHVTVMD 143
>AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 125 bits (315), Expect = 7e-29 Identities = 68/139 (48%), Positives = 98/139 (70%), Gaps = 2/139 (1%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRR 424 F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRR Sbjct: 5 FILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRR 64 Query: 423 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 244 YA LFF V VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 65 YAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAG 124 Query: 243 CIVETSKQNILAPIQLMEK 187 I ETSKQ +L ++ ++K Sbjct: 125 EIEETSKQVVLTRLEHLDK 143
>AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 125 bits (314), Expect = 9e-29 Identities = 57/133 (42%), Positives = 93/133 (69%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 418 F+LL ++QG+ RL ++Y L ER+ + +I++ L+R + SF++ + K+VY+RYA Sbjct: 4 FILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYA 63 Query: 417 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 238 SL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I Sbjct: 64 SLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEI 123 Query: 237 VETSKQNILAPIQ 199 ETSK+ + I+ Sbjct: 124 QETSKKTAVKAIE 136
>AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 124 bits (312), Expect = 2e-28 Identities = 60/133 (45%), Positives = 93/133 (69%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 418 F+LL ++QG+ RL ++Y L ER+ + EIV+ L+R + SFV+ + K+VY+RYA Sbjct: 4 FILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYA 63 Query: 417 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 238 SL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I Sbjct: 64 SLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEI 123 Query: 237 VETSKQNILAPIQ 199 ETSK+ + I+ Sbjct: 124 QETSKKIAVKAIE 136
>AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 124 bits (311), Expect = 2e-28 Identities = 67/139 (48%), Positives = 97/139 (69%), Gaps = 2/139 (1%) Frame = -3 Query: 597 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRR 424 F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRR Sbjct: 5 FILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRR 64 Query: 423 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 244 YA LFF VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 65 YAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAG 124 Query: 243 CIVETSKQNILAPIQLMEK 187 I ETSKQ +L ++ ++K Sbjct: 125 EIEETSKQVVLTRLEHLDK 143
>AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat assembly| protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) Length = 132 Score = 123 bits (309), Expect = 4e-28 Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 2/129 (1%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+LL N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +KV+YRRY Sbjct: 3 RFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV--HFMLEEMVMN 247 A LFF + VD +NELA LE IHL VE +D F NVCELD++F+ KV + +L+E ++ Sbjct: 63 AGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILA 122 Query: 246 GCIVETSKQ 220 G + ETSK+ Sbjct: 123 GELQETSKR 131
>AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 119 bits (299), Expect = 5e-27 Identities = 60/139 (43%), Positives = 94/139 (67%), Gaps = 1/139 (0%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRR 424 +F+L+ N+ G+ RL++YY DE+ L+ I + R + Q +F+E N K+VYRR Sbjct: 3 QFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRR 62 Query: 423 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 244 YA L+F VD+ +N+LAILE IH VE +D FGNVCELD++F+ KV +L+E+++ G Sbjct: 63 YAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGG 122 Query: 243 CIVETSKQNILAPIQLMEK 187 I E++K+++L I+ +EK Sbjct: 123 EIGESNKKSVLERIEALEK 141
>AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin a Length = 142 Score = 119 bits (297), Expect = 9e-27 Identities = 57/137 (41%), Positives = 92/137 (67%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRY Sbjct: 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 63 AGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGE 122 Query: 240 IVETSKQNILAPIQLME 190 I ETS+ +L + +++ Sbjct: 123 IRETSQTKVLKQLLMLQ 139
>AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 119 bits (297), Expect = 9e-27 Identities = 57/137 (41%), Positives = 92/137 (67%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRY Sbjct: 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 63 AGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGE 122 Query: 240 IVETSKQNILAPIQLME 190 I ETS+ +L + +++ Sbjct: 123 IRETSQTKVLKQLLMLQ 139
>AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 119 bits (297), Expect = 9e-27 Identities = 57/137 (41%), Positives = 92/137 (67%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRY Sbjct: 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 63 AGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGE 122 Query: 240 IVETSKQNILAPIQLME 190 I ETS+ +L + +++ Sbjct: 123 IRETSQTKVLKQLLMLQ 139
>AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathr Length = 142 Score = 119 bits (297), Expect = 9e-27 Identities = 57/137 (41%), Positives = 92/137 (67%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 RF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRY Sbjct: 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRY 62 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 241 A L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 63 AGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGE 122 Query: 240 IVETSKQNILAPIQLME 190 I ETS+ +L + +++ Sbjct: 123 IRETSQTKVLKQLLMLQ 139
>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 2e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 433 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 2e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 433 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 2e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 433 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) Length = 193 Score = 111 bits (277), Expect = 2e-24 Identities = 55/142 (38%), Positives = 89/142 (62%), Gaps = 6/142 (4%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 433 +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + K++ Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMV Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 M G ++ET+ I+ I K Sbjct: 125 MGGMVLETNMNEIVTQIDAQNK 146
>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 193 Score = 111 bits (277), Expect = 2e-24 Identities = 55/142 (38%), Positives = 89/142 (62%), Gaps = 6/142 (4%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 433 +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + K++ Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMV Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 M G ++ET+ I+ I K Sbjct: 125 MGGMVLETNMNEIVTQIDAQNK 146
>AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) Length = 147 Score = 101 bits (251), Expect = 2e-21 Identities = 57/142 (40%), Positives = 92/142 (64%), Gaps = 4/142 (2%) Frame = -3 Query: 600 RFVLLVNKQGQTRLAQYYEHLSLDERRALEG--EIVRKCLARTDQ-QCSFVEHRNY-KVV 433 +F+L NKQG RL ++++ S D +R+ + +I R +R + Q +FVE + K++ Sbjct: 4 QFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKLI 63 Query: 432 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 253 YRRYA L+F++GVD ++E L IHL VE +D FGNVCELDI+F+ KV+ +++EM Sbjct: 64 YRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEMF 123 Query: 252 MNGCIVETSKQNILAPIQLMEK 187 + G I E SK +L + ++++ Sbjct: 124 IGGEIQEISKDMLLERLSILDR 145
>AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 165 Score = 98.6 bits (244), Expect = 1e-20 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 5/142 (3%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHR----NYKVVYR 427 V + N +G+ RL ++Y + ++ L G+I R C+F+E +++YR Sbjct: 5 VFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYR 64 Query: 426 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 247 +YA+L+F+ VD E+EL IL+ I + VE +DR F NVCELD++F +++H +L E+V Sbjct: 65 QYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSG 124 Query: 246 GCIVETS-KQNILAPIQLMEKT 184 G ++ET+ + +LA M KT Sbjct: 125 GLVLETNLNEIVLAAQNQMPKT 146
>AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 194 Score = 86.7 bits (213), Expect = 5e-17 Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 18/156 (11%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLAR-TDQQCSF-------------- 460 VL+ NK+ Q RL ++Y + L +++ L ++ R +D Q SF Sbjct: 5 VLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENN 64 Query: 459 ---VEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH 289 V + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE++DR F V ELD++F+ Sbjct: 65 NDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFN 124 Query: 288 LEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 181 + + +LEE+V G ++ET+ I+A + + K + Sbjct: 125 WQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAA 160
>AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 185 Score = 86.3 bits (212), Expect = 6e-17 Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 14/152 (9%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVE------------ 454 VL+ NK+ Q RL +YY + L +++ L ++ R Q SF+ Sbjct: 5 VLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSET 64 Query: 453 -HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV 277 + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE +DR F V ELD++F+ + + Sbjct: 65 INEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQTL 124 Query: 276 HFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 181 +LEE++ G ++ET+ + I+ + + +TS Sbjct: 125 ESVLEEIIQGGMVIETNVKKIVETVDELNRTS 156
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 243 CIVETSKQNILAPIQL 196 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 243 CIVETSKQNILAPIQL 196 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 243 CIVETSKQNILAPIQL 196 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 243 CIVETSKQNILAPIQL 196 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 47.4 bits (111), Expect = 3e-05 Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F +VY+ Sbjct: 49 VFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAFFG--GMTIVYKNS 105 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 LF V + ENEL ++ + L E+++ NV + ++ +++ +L+E+V G Sbjct: 106 IDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGG 165 Query: 243 CIVETSKQNILAPI 202 I+E+ Q ++ + Sbjct: 166 VILESDPQQVIQKV 179
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 421 V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F+ +VY+ Sbjct: 44 VFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT-SRTESEIAFLG--GMTIVYKSS 100 Query: 420 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 244 +F V + ENEL ++ + L +++ NV + ++ +++ +L+E V G Sbjct: 101 IDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGG 160 Query: 243 CIVETSKQNILAPI 202 I+E+ Q ++ + Sbjct: 161 VILESDPQQVIQKV 174
>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly| protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 446 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/129 (20%), Positives = 65/129 (50%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYAS 415 + + N +G T + + + H D ++++ L TD + V + +Y ++ Sbjct: 5 LFIFNLKGDTLICKTFRH---DLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHED 61 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 235 L+ + + N + +LEF+ L++ + +FG + E + ++ + +L+EM+ G I+ Sbjct: 62 LYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYG-II 120 Query: 234 ETSKQNILA 208 +T++ + LA Sbjct: 121 QTTEPDALA 129
>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa subu Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 453 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 274 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 273 FMLEEMVMNGCIVETSKQNIL 211 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 453 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 274 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 273 FMLEEMVMNGCIVETSKQNIL 211 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 453 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 274 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 273 FMLEEMVMNGCIVETSKQNIL 211 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) (Clathrin coat assembly protein AP47 homolog 1) (Clathrin coat-associated protein AP47 homolog 1) (Golgi ada Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 235 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 234 ETSKQNIL 211 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 235 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 234 ETSKQNIL 211 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 235 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 234 ETSKQNIL 211 T + NIL Sbjct: 124 AT-ESNIL 130
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 39.3 bits (90), Expect = 0.009 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = -3 Query: 447 NYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFM 268 +Y V R+ F V + + L ++EF+H + ET+ +FG E I ++ V+ + Sbjct: 54 HYLVSTHRHGISFVAV-IQAEVPPLFVIEFLHRVAETLQDYFGECSEASIKDNVVIVYEL 112 Query: 267 LEEMVMNGCIVETSKQNIL 211 LEEM+ NG + T + NIL Sbjct: 113 LEEMLDNGFPLAT-ESNIL 130
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 37.7 bits (86), Expect = 0.026 Identities = 29/144 (20%), Positives = 67/144 (46%), Gaps = 13/144 (9%) Frame = -3 Query: 594 VLLVNKQGQTRLAQYYE------------HLSLDERRALEGEIVRKCLARTDQQCSFVEH 451 VL++++QG+ A+YY+ S+ +++ E ++ RK + + F +H Sbjct: 12 VLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDSEILIFEDH 71 Query: 450 RNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGN-VCELDIMFHLEKVH 274 V+Y+ Y + + +ENE+ + + + +D + + + +I + + V Sbjct: 72 ---LVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYDMVL 128 Query: 273 FMLEEMVMNGCIVETSKQNILAPI 202 ++E + NG I+ET I + + Sbjct: 129 LAIDETIDNGVILETDSNTIASRV 152
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 35.0 bits (79), Expect = 0.17 Identities = 21/115 (18%), Positives = 56/115 (48%) Frame = -3 Query: 588 LVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLF 409 + +QG+ L++ ++ LS D L + ++ +FVE ++ + VYR + + + Sbjct: 7 ITTRQGKPLLSRQFKDLSKDRVLELLSNF-QNLVSEISSDHTFVEDKHVRYVYRPFDNYY 65 Query: 408 FLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 244 ++ + N + L ++L +T++ + + + +I + ++ +E+V G Sbjct: 66 IILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMG 120
>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein RSC8| (Remodel the structure of chromatin complex subunit 8) (SWI3 homolog) Length = 557 Score = 32.7 bits (73), Expect = 0.83 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = -3 Query: 387 DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 220 +E++ I E + L +E ++ F +C+L+ +EK+ ++ E M + SKQ Sbjct: 423 EESQAIIQELVKLTMEKLESKFTKLCDLETQLEMEKLKYVKESEKMLNDRLSLSKQ 478
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 489 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 310 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 309 ELDIMFHLEKVHFMLEEMVMNG 244 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>VPS54_DROME (Q9VLC0) Vacuolar protein sorting protein 54 (Protein scattered)| Length = 940 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = +2 Query: 206 GANMFCLLVSTMQPFITISSSMKCTFSRWNMMSSSHTLP-----KWRSMVSTRRCMNSR 367 GA LLV QP+ +S+S+ + S+H LP R++V RC NSR Sbjct: 696 GAGNPVLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRCFNSR 754
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.4 bits (67), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 171 CELKSA*VPLLCEEKCQTTA-VCMGGCVHPTGKCEMSC 61 C S+ V LLC C++T V + C PT C+ SC Sbjct: 230 CCRPSSSVSLLCHPVCRSTCCVPVSSCCAPTSSCQSSC 267
>YJBB_SHIFL (P0AF44) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 286 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECOLI (P0AF43) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 286 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECO57 (Q8X5Z7) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 414 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 286 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 257 ISSSMKCTFSRWNMMSSSHTLPKWRSMVSTRRCMNS---RMANSFSSLSTPT 403 I+ SM S M SSS +W S+ ST ++S +++S+SSLS+P+ Sbjct: 117 ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLSSSATSLSSSWSSLSSPS 168
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/90 (22%), Positives = 38/90 (42%) Frame = -3 Query: 513 EGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETM 334 + ++ CL + F++H + VV + N AI F+H LVE + Sbjct: 42 QSNLIPPCLNHNGLEYLFIQHNDLYVV---------AIVTSLSANAAAIFTFLHKLVEVL 92 Query: 333 DRHFGNVCELDIMFHLEKVHFMLEEMVMNG 244 + V E I + ++ +L+E++ G Sbjct: 93 SDYLKTVEEESIRDNFVIIYELLDEVMDYG 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,997,319 Number of Sequences: 219361 Number of extensions: 1362511 Number of successful extensions: 4330 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 4142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4313 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
