| Clone Name | rbaal17m16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105951.1| Zea mays PCO080381 mRNA sequence Length = 826 Score = 567 bits (286), Expect = e-158 Identities = 385/418 (92%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 |||||||||||||| || || || ||||| ||||||||||| || |||||||| |||||| Sbjct: 543 gttttctccataagttgtattggtgccaagatgttctgtttacttgtctccacaatgcaa 484 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 483 ccattcatcaccatctcttccaacatgaagtgcactttctccagatggaacatgatatcg 424 Query: 305 agctcgcacacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattca 364 ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||| Sbjct: 423 agctcgcacacattgccgaagtggcgatccatagtttccaccagaagatgtatgaattca 364 Query: 365 aggatggctaactcattctcatcgttgtccacgccgacgaggaagaagagggaggcgtag 424 ||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| Sbjct: 363 aggatagctaactcattctcatcgctgtcgacgccgacgaggaagaaaagggaggcgtag 304 Query: 425 cgcctgtagacgaccttgtagttccggtgctccacgaaagagcactgctggtcggtgcgg 484 |||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||| Sbjct: 303 cgcctgtaaacgaccttgtagttccggtgctccacaaacgaacactgctggtcagtgcgg 244 Query: 485 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgagggagaggtgc 544 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 243 gcgaggcacttgcggacgatctcgccctcgagggcccgtcgctcgtcgagggagaggtgc 184 Query: 545 tcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagcacgaaccgga 602 |||||||||||||||||||||||||| ||||||||||| || | |||||||||||||| Sbjct: 183 tcgtagtactgcgccagccgcgtctggccctgcttgttgacgaacagcacgaaccgga 126
>ref|NM_196093.1| Oryza sativa (japonica cultivar-group) putative clathrin assembly protein (OSJNBa0083M08.3), mRNA Length = 622 Score = 535 bits (270), Expect = e-149 Identities = 381/418 (91%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 ||||||||||| || ||||| || ||||| ||||||||||| || || || || |||||| Sbjct: 438 gttttctccatcaggtggattggtgccaagatgttctgtttactagtttcgacaatgcaa 379 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 378 ccattcatcaccatctcttccagcatgaagtgcaccttctccagatggaacataatgtcg 319 Query: 305 agctcgcacacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattca 364 ||||| ||||| ||||||||||| |||||||| ||||| || | |||||| ||||||||| Sbjct: 318 agctcacacacattgccaaagtgacggtccatagtttcaaccaaaagatgaatgaattca 259 Query: 365 aggatggctaactcattctcatcgttgtccacgccgacgaggaagaagagggaggcgtag 424 ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 258 aggatagctaactcattctcatcgttgtcgacgccgactaggaagaagagggaggcgtag 199 Query: 425 cgcctgtagacgaccttgtagttccggtgctccacgaaagagcactgctggtcggtgcgg 484 |||| ||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct: 198 cgccggtacaccaccttgtagttgcggtgctccacgaaagaacactggtggtcggtgcgg 139 Query: 485 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgagggagaggtgc 544 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 138 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgacggagaggtgc 79 Query: 545 tcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagcacgaaccgga 602 |||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||| Sbjct: 78 tcgtagtattgcgccacccgcgtctgcccctgcttgttcaccatcaccacgaaccgga 21
>dbj|AK120131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026P11, full insert sequence Length = 761 Score = 533 bits (269), Expect = e-148 Identities = 380/417 (91%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 ||||||||||| || ||||| || ||||| ||||||||||| || || || || |||||| Sbjct: 477 gttttctccatcaggtggattggtgccaagatgttctgtttactagtttcgacaatgcaa 418 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 417 ccattcatcaccatctcttccagcatgaagtgcaccttctccagatggaacataatgtcg 358 Query: 305 agctcgcacacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattca 364 ||||| ||||| ||||||||||| |||||||| ||||| || | |||||| ||||||||| Sbjct: 357 agctcacacacattgccaaagtgacggtccatagtttcaaccaaaagatgaatgaattca 298 Query: 365 aggatggctaactcattctcatcgttgtccacgccgacgaggaagaagagggaggcgtag 424 ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 297 aggatagctaactcattctcatcgttgtcgacgccgactaggaagaagagggaggcgtag 238 Query: 425 cgcctgtagacgaccttgtagttccggtgctccacgaaagagcactgctggtcggtgcgg 484 |||| ||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct: 237 cgccggtacaccaccttgtagttgcggtgctccacgaaagaacactggtggtcggtgcgg 178 Query: 485 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgagggagaggtgc 544 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 177 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgacggagaggtgc 118 Query: 545 tcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagcacgaaccgg 601 |||||||| ||||||| |||||||||||||||||||||||||| || |||||||||| Sbjct: 117 tcgtagtattgcgccacccgcgtctgcccctgcttgttcaccatcaccacgaaccgg 61
>ref|XM_482218.1| Oryza sativa (japonica cultivar-group), mRNA Length = 432 Score = 511 bits (258), Expect = e-142 Identities = 378/418 (90%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 |||||||||||||||||||| || || || ||||||||||| || ||||| || ||||| Sbjct: 425 gttttctccataagctggattggtgctaagatgttctgtttacttgtctctactatgcag 366 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || || |||||||||||||||||| Sbjct: 365 ccattcatcaccatctcttccagcatgaagtgcaccttctctagatggaacatgatgtcg 306 Query: 305 agctcgcacacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattca 364 || || ||||| || || |||||||||||||| |||||||| | |||||| |||||||| Sbjct: 305 agttcacacacatttccgaagtggcggtccatagtttccacaaaaagatgaatgaattcg 246 Query: 365 aggatggctaactcattctcatcgttgtccacgccgacgaggaagaagagggaggcgtag 424 || || |||| ||||||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 245 agaatagctagctcattctcgtcgttgtcgacgccgacgaggaagaagagggaagcgtac 186 Query: 425 cgcctgtagacgaccttgtagttccggtgctccacgaaagagcactgctggtcggtgcgg 484 |||| ||| || |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 185 cgccggtacaccaccttgtagttccggtgctccacgaacgaacactgctggtcggtgcgg 126 Query: 485 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgagggagaggtgc 544 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 125 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgatggagaggtgc 66 Query: 545 tcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagcacgaaccgga 602 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 65 tcgtagtactgggccagccgcgtctgcccctgcttgttcacgaacagcacgaaccgga 8
>gb|BT017687.1| Zea mays clone EL01N0444B12.c mRNA sequence Length = 566 Score = 505 bits (255), Expect = e-140 Identities = 348/379 (91%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 |||||||||||||| || || || ||||| || |||||||| || |||||||| |||||| Sbjct: 387 gttttctccataagttgtattggtgccaagatattctgtttacttgtctccacaatgcaa 328 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| Sbjct: 327 ccattcatcaccatctcttccaacatgaagtgcactttctccagatggaacatgatatcg 268 Query: 305 agctcgcacacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattca 364 ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||| Sbjct: 267 agctcgcacacattgccgaagtggcgatccatagtttccaccagaagatgtatgaattca 208 Query: 365 aggatggctaactcattctcatcgttgtccacgccgacgaggaagaagagggaggcgtag 424 ||||| |||||||||||||||||| |||| |||||||| |||||||| |||||||||||| Sbjct: 207 aggatagctaactcattctcatcgctgtcgacgccgacaaggaagaaaagggaggcgtag 148 Query: 425 cgcctgtagacgaccttgtagttccggtgctccacgaaagagcactgctggtcggtgcgg 484 |||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||| Sbjct: 147 cgcctgtaaacgaccttgtagttccggtgctccacaaacgaacactgctggtcagtgcgg 88 Query: 485 gcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgagggagaggtgc 544 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 87 gcgaggcacttgcggacgatctcgccctcgagggcccgtcgctcgtcgagggagaggtgc 28 Query: 545 tcgtagtactgcgccagcc 563 ||||||||||||||||||| Sbjct: 27 tcgtagtactgcgccagcc 9
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 234 bits (118), Expect = 3e-58 Identities = 130/134 (97%) Strand = Plus / Minus Query: 469 ctgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18751523 ctgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctc 18751464 Query: 529 gtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcaccag 588 ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 18751463 gtcgatggagaggtgctcgtagtactgggccagccgcgtctgcccctgcttgttcacgaa 18751404 Query: 589 cagcacgaaccgga 602 |||||||||||||| Sbjct: 18751403 cagcacgaaccgga 18751390 Score = 131 bits (66), Expect = 3e-27 Identities = 108/122 (88%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 |||||||||||||||||||| || || || ||||||||||| || ||||| || ||||| Sbjct: 18752888 gttttctccataagctggattggtgctaagatgttctgtttacttgtctctactatgcag 18752829 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || || |||||||||||||||||| Sbjct: 18752828 ccattcatcaccatctcttccagcatgaagtgcaccttctctagatggaacatgatgtcg 18752769 Query: 305 ag 306 || Sbjct: 18752768 ag 18752767 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 382 ctcatcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgacctt 441 |||||||||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||| Sbjct: 18772802 ctcatcgttgtcgacgccgacgaggaagaagagggaagcgtaccgccggtacaccacctt 18772743 Query: 442 gtagttccggtgctccacgaaagagcactgc 472 ||||||||||||||||||||| || |||||| Sbjct: 18772742 gtagttccggtgctccacgaacgaacactgc 18772712 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Minus Query: 386 tcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgaccttgtag 445 |||||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||||||| Sbjct: 18751821 tcgttgtcgacgccgacgaggaagaagagggaagcgtaccgccggtacaccaccttgtag 18751762 Query: 446 ttccggtgctccacgaaagagcactgc 472 ||||||||||||||||| || |||||| Sbjct: 18751761 ttccggtgctccacgaacgaacactgc 18751735 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 323 aagtggcggtccatggtttccacgagaagatgtatgaattcaaggatggctaactcattc 382 |||||||||||||| |||||||| | |||||| |||||||| || || |||| ||||||| Sbjct: 18752651 aagtggcggtccatagtttccacaaaaagatgaatgaattcgagaatagctagctcattc 18752592 Query: 383 t 383 | Sbjct: 18752591 t 18752591
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 234 bits (118), Expect = 3e-58 Identities = 130/134 (97%) Strand = Plus / Minus Query: 469 ctgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54972 ctgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctc 54913 Query: 529 gtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcaccag 588 ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 54912 gtcgatggagaggtgctcgtagtactgggccagccgcgtctgcccctgcttgttcacgaa 54853 Query: 589 cagcacgaaccgga 602 |||||||||||||| Sbjct: 54852 cagcacgaaccgga 54839 Score = 131 bits (66), Expect = 3e-27 Identities = 108/122 (88%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 |||||||||||||||||||| || || || ||||||||||| || ||||| || ||||| Sbjct: 56337 gttttctccataagctggattggtgctaagatgttctgtttacttgtctctactatgcag 56278 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || || |||||||||||||||||| Sbjct: 56277 ccattcatcaccatctcttccagcatgaagtgcaccttctctagatggaacatgatgtcg 56218 Query: 305 ag 306 || Sbjct: 56217 ag 56216 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 382 ctcatcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgacctt 441 |||||||||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||| Sbjct: 76251 ctcatcgttgtcgacgccgacgaggaagaagagggaagcgtaccgccggtacaccacctt 76192 Query: 442 gtagttccggtgctccacgaaagagcactgc 472 ||||||||||||||||||||| || |||||| Sbjct: 76191 gtagttccggtgctccacgaacgaacactgc 76161 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Minus Query: 386 tcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgaccttgtag 445 |||||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||||||| Sbjct: 55270 tcgttgtcgacgccgacgaggaagaagagggaagcgtaccgccggtacaccaccttgtag 55211 Query: 446 ttccggtgctccacgaaagagcactgc 472 ||||||||||||||||| || |||||| Sbjct: 55210 ttccggtgctccacgaacgaacactgc 55184 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 323 aagtggcggtccatggtttccacgagaagatgtatgaattcaaggatggctaactcattc 382 |||||||||||||| |||||||| | |||||| |||||||| || || |||| ||||||| Sbjct: 56100 aagtggcggtccatagtttccacaaaaagatgaatgaattcgagaatagctagctcattc 56041 Query: 383 t 383 | Sbjct: 56040 t 56040
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 218 bits (110), Expect = 2e-53 Identities = 125/130 (96%) Strand = Plus / Minus Query: 473 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38086 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 38027 Query: 533 agggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagc 592 | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| || | Sbjct: 38026 acggagaggtgctcgtagtattgcgccacccgcgtctgcccctgcttgttcaccatcacc 37967 Query: 593 acgaaccgga 602 |||||||||| Sbjct: 37966 acgaaccgga 37957 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 ||||||||||| || ||||| || ||||| ||||||||||| || || || || |||||| Sbjct: 40537 gttttctccatcaggtggattggtgccaagatgttctgtttactagtttcgacaatgcaa 40478 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 40477 ccattcatcaccatctcttccagcatgaagtgcaccttctccagatggaacataatgtcg 40418 Query: 305 agctc 309 ||||| Sbjct: 40417 agctc 40413 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 382 ctcatcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgacctt 441 |||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||| Sbjct: 38311 ctcatcgttgtcgacgccgactaggaagaagagggaggcgtagcgccggtacaccacctt 38252 Query: 442 gtagttccggtgctccacgaaagagcactgc 472 |||||| ||||||||||||||||| |||||| Sbjct: 38251 gtagttgcggtgctccacgaaagaacactgc 38221 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 317 ttgccaaagtggcggtccatggtttccacgagaagatgtatgaattcaaggatggctaac 376 ||||||||||| |||||||| ||||| || | |||||| |||||||||||||| |||||| Sbjct: 40307 ttgccaaagtgacggtccatagtttcaaccaaaagatgaatgaattcaaggatagctaac 40248 Query: 377 tcattct 383 ||||||| Sbjct: 40247 tcattct 40241
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 218 bits (110), Expect = 2e-53 Identities = 125/130 (96%) Strand = Plus / Plus Query: 473 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11030150 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 11030209 Query: 533 agggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagc 592 | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| || | Sbjct: 11030210 acggagaggtgctcgtagtattgcgccacccgcgtctgcccctgcttgttcaccatcacc 11030269 Query: 593 acgaaccgga 602 |||||||||| Sbjct: 11030270 acgaaccgga 11030279 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 ||||||||||| || ||||| || ||||| ||||||||||| || || || || |||||| Sbjct: 11027699 gttttctccatcaggtggattggtgccaagatgttctgtttactagtttcgacaatgcaa 11027758 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 11027759 ccattcatcaccatctcttccagcatgaagtgcaccttctccagatggaacataatgtcg 11027818 Query: 305 agctc 309 ||||| Sbjct: 11027819 agctc 11027823 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 382 ctcatcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgacctt 441 |||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||| Sbjct: 11029925 ctcatcgttgtcgacgccgactaggaagaagagggaggcgtagcgccggtacaccacctt 11029984 Query: 442 gtagttccggtgctccacgaaagagcactgc 472 |||||| ||||||||||||||||| |||||| Sbjct: 11029985 gtagttgcggtgctccacgaaagaacactgc 11030015 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 317 ttgccaaagtggcggtccatggtttccacgagaagatgtatgaattcaaggatggctaac 376 ||||||||||| |||||||| ||||| || | |||||| |||||||||||||| |||||| Sbjct: 11027929 ttgccaaagtgacggtccatagtttcaaccaaaagatgaatgaattcaaggatagctaac 11027988 Query: 377 tcattct 383 ||||||| Sbjct: 11027989 tcattct 11027995
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 218 bits (110), Expect = 2e-53 Identities = 125/130 (96%) Strand = Plus / Plus Query: 473 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11036590 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 11036649 Query: 533 agggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcaccagcagc 592 | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| || | Sbjct: 11036650 acggagaggtgctcgtagtattgcgccacccgcgtctgcccctgcttgttcaccatcacc 11036709 Query: 593 acgaaccgga 602 |||||||||| Sbjct: 11036710 acgaaccgga 11036719 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 185 gttttctccataagctggatgggcgccaatatgttctgtttgctcgtctccacgatgcaa 244 ||||||||||| || ||||| || ||||| ||||||||||| || || || || |||||| Sbjct: 11034139 gttttctccatcaggtggattggtgccaagatgttctgtttactagtttcgacaatgcaa 11034198 Query: 245 ccgttcatcaccatctcttcgagcatgaagtgcactttttccagatggaacatgatgtcg 304 || ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 11034199 ccattcatcaccatctcttccagcatgaagtgcaccttctccagatggaacataatgtcg 11034258 Query: 305 agctc 309 ||||| Sbjct: 11034259 agctc 11034263 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 382 ctcatcgttgtccacgccgacgaggaagaagagggaggcgtagcgcctgtagacgacctt 441 |||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||| Sbjct: 11036365 ctcatcgttgtcgacgccgactaggaagaagagggaggcgtagcgccggtacaccacctt 11036424 Query: 442 gtagttccggtgctccacgaaagagcactgc 472 |||||| ||||||||||||||||| |||||| Sbjct: 11036425 gtagttgcggtgctccacgaaagaacactgc 11036455 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 317 ttgccaaagtggcggtccatggtttccacgagaagatgtatgaattcaaggatggctaac 376 ||||||||||| |||||||| ||||| || | |||||| |||||||||||||| |||||| Sbjct: 11034369 ttgccaaagtgacggtccatagtttcaaccaaaagatgaatgaattcaaggatagctaac 11034428 Query: 377 tcattct 383 ||||||| Sbjct: 11034429 tcattct 11034435
>ref|NM_127537.2| Arabidopsis thaliana unknown protein AT2G19790 mRNA, complete cds Length = 631 Score = 153 bits (77), Expect = 8e-34 Identities = 293/365 (80%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 |||||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||| Sbjct: 458 tttgcttgtctccacaatgcaaccattcatcaccatttcttccagcatgaaatgagcttt 399 Query: 283 ttccagatggaacatgatgtcgagctcgcacacgttgccaaagtggcggtccatggtttc 342 |||||||||||||| ||||| ||||| ||||| || ||||| || |||||| || || Sbjct: 398 ctccagatggaacattatgtctagctcacacacatttccaaaatgcttgtccattgtctc 339 Query: 343 cacgagaagatgtatgaattcaaggatggctaactcattctcatcgttgtccacgccgac 402 || | |||||||||||| || || || || | ||| || ||||||| || || || || Sbjct: 338 gaccaaaagatgtatgaactctagaatcgccagctcgttttcatcgtcatcaaccccaac 279 Query: 403 gaggaagaagagggaggcgtagcgcctgtagacgaccttgtagttccggtgctccacgaa 462 | ||||||||| || ||||| ||||||||||| | ||||||||| || ||||| || || Sbjct: 278 catgaagaagagagatgcgtaacgcctgtagactatcttgtagttgcgatgctcgacaaa 219 Query: 463 agagcactgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcg 522 || ||||| |||||| |||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct: 218 cgaacactgttggtcgttgcgagcgaggcatttacggacgatttcgccttcgagagcgcg 159 Query: 523 gcgctcgtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgtt 582 || || ||||| | ||| ||||||||||| || || || ||||| || |||||||| Sbjct: 158 acgttcctcgagagtgagccattcgtagtactgagcaagacgagtctggccttgcttgtt 99 Query: 583 cacca 587 ||||| Sbjct: 98 cacca 94
>gb|AY059143.1| Arabidopsis thaliana putative clathrin assembly protein (At2g19790) mRNA, complete cds Length = 463 Score = 153 bits (77), Expect = 8e-34 Identities = 293/365 (80%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 |||||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||| Sbjct: 387 tttgcttgtctccacaatgcaaccattcatcaccatttcttccagcatgaaatgagcttt 328 Query: 283 ttccagatggaacatgatgtcgagctcgcacacgttgccaaagtggcggtccatggtttc 342 |||||||||||||| ||||| ||||| ||||| || ||||| || |||||| || || Sbjct: 327 ctccagatggaacattatgtctagctcacacacatttccaaaatgcttgtccattgtctc 268 Query: 343 cacgagaagatgtatgaattcaaggatggctaactcattctcatcgttgtccacgccgac 402 || | |||||||||||| || || || || | ||| || ||||||| || || || || Sbjct: 267 gaccaaaagatgtatgaactctagaatcgccagctcgttttcatcgtcatcaaccccaac 208 Query: 403 gaggaagaagagggaggcgtagcgcctgtagacgaccttgtagttccggtgctccacgaa 462 | ||||||||| || ||||| ||||||||||| | ||||||||| || ||||| || || Sbjct: 207 catgaagaagagagatgcgtaacgcctgtagactatcttgtagttgcgatgctcgacaaa 148 Query: 463 agagcactgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcg 522 || ||||| |||||| |||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct: 147 cgaacactgttggtcgttgcgagcgaggcatttacggacgatttcgccttcgagagcgcg 88 Query: 523 gcgctcgtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgtt 582 || || ||||| | ||| ||||||||||| || || || ||||| || |||||||| Sbjct: 87 acgttcctcgagagtgagccattcgtagtactgagcaagacgagtctggccttgcttgtt 28 Query: 583 cacca 587 ||||| Sbjct: 27 cacca 23
>gb|AF370185.1| Arabidopsis thaliana putative clathrin assembly protein (At2g19790) mRNA, complete cds Length = 645 Score = 153 bits (77), Expect = 8e-34 Identities = 293/365 (80%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 |||||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||| Sbjct: 456 tttgcttgtctccacaatgcaaccattcatcaccatttcttccagcatgaaatgagcttt 397 Query: 283 ttccagatggaacatgatgtcgagctcgcacacgttgccaaagtggcggtccatggtttc 342 |||||||||||||| ||||| ||||| ||||| || ||||| || |||||| || || Sbjct: 396 ctccagatggaacattatgtctagctcacacacatttccaaaatgcttgtccattgtctc 337 Query: 343 cacgagaagatgtatgaattcaaggatggctaactcattctcatcgttgtccacgccgac 402 || | |||||||||||| || || || || | ||| || ||||||| || || || || Sbjct: 336 gaccaaaagatgtatgaactctagaatcgccagctcgttttcatcgtcatcaaccccaac 277 Query: 403 gaggaagaagagggaggcgtagcgcctgtagacgaccttgtagttccggtgctccacgaa 462 | ||||||||| || ||||| ||||||||||| | ||||||||| || ||||| || || Sbjct: 276 catgaagaagagagatgcgtaacgcctgtagactatcttgtagttgcgatgctcgacaaa 217 Query: 463 agagcactgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcg 522 || ||||| |||||| |||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct: 216 cgaacactgttggtcgttgcgagcgaggcatttacggacgatttcgccttcgagagcgcg 157 Query: 523 gcgctcgtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgtt 582 || || ||||| | ||| ||||||||||| || || || ||||| || |||||||| Sbjct: 156 acgttcctcgagagtgagccattcgtagtactgagcaagacgagtctggccttgcttgtt 97 Query: 583 cacca 587 ||||| Sbjct: 96 cacca 92
>gb|AY088273.1| Arabidopsis thaliana clone 5064 mRNA, complete sequence Length = 629 Score = 153 bits (77), Expect = 8e-34 Identities = 293/365 (80%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 |||||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||| Sbjct: 458 tttgcttgtctccacaatgcaaccattcatcaccatttcttccagcatgaaatgagcttt 399 Query: 283 ttccagatggaacatgatgtcgagctcgcacacgttgccaaagtggcggtccatggtttc 342 |||||||||||||| ||||| ||||| ||||| || ||||| || |||||| || || Sbjct: 398 ctccagatggaacattatgtctagctcacacacatttccaaaatgcttgtccattgtctc 339 Query: 343 cacgagaagatgtatgaattcaaggatggctaactcattctcatcgttgtccacgccgac 402 || | |||||||||||| || || || || | ||| || ||||||| || || || || Sbjct: 338 gaccaaaagatgtatgaactctagaatcgccagctcgttttcatcgtcatcaaccccaac 279 Query: 403 gaggaagaagagggaggcgtagcgcctgtagacgaccttgtagttccggtgctccacgaa 462 | ||||||||| || ||||| ||||||||||| | ||||||||| || ||||| || || Sbjct: 278 catgaagaagagagatgcgtaacgcctgtagactatcttgtagttgcgatgctcgacaaa 219 Query: 463 agagcactgctggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcg 522 || ||||| |||||| |||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct: 218 cgaacactgttggtcgttgcgagcgaggcatttacggacgatttcgccttcgagagcgcg 159 Query: 523 gcgctcgtcgagggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgtt 582 || || ||||| | ||| ||||||||||| || || || ||||| || |||||||| Sbjct: 158 acgttcctcgagagtgagccattcgtagtactgagcaagacgagtctggccttgcttgtt 99 Query: 583 cacca 587 ||||| Sbjct: 98 cacca 94
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 |||||| |||||||| |||||||| ||||||||||| ||||| |||||||| || |||| Sbjct: 95045 tttgcttgtctccacaatgcaaccattcatcaccatttcttccagcatgaaatgagcttt 95104 Query: 283 ttccagatggaacatgatgtcgagctc 309 |||||||||||||| ||||| ||||| Sbjct: 95105 ctccagatggaacattatgtctagctc 95131 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 473 tggtcggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcg 532 |||||| |||| |||||||| || |||||||| ||||| ||||| ||||| || || ||| Sbjct: 95957 tggtcgttgcgagcgaggcatttacggacgatttcgccttcgagagcgcgacgttcctcg 96016 Query: 533 agggagaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 || | ||| ||||||||||| || || || ||||| || ||||||||||||| Sbjct: 96017 agagtgagccattcgtagtactgagcaagacgagtctggccttgcttgttcacca 96071 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 406 gaagaagagggaggcgtagcgcctgtagacgaccttgtagttccggtgctc 456 ||||||||| || ||||| ||||||||||| | ||||||||| || ||||| Sbjct: 95511 gaagaagagagatgcgtaacgcctgtagactatcttgtagttgcgatgctc 95561
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/105 (84%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 478 ggtgcgggcgaggcacttgcggacgatctcgccctcgagggcgcggcgctcgtcgaggga 537 |||||||| |||||||||| ||||||||| ||||||||||| || |||||||||| | Sbjct: 54874 ggtgcgggtgaggcacttgtggacgatctgaccctcgagggctcgtcgctcgtcgatg-- 54817 Query: 538 gaggtgctcgtagtactgcgccagccgcgtctgcccctgcttgtt 582 |||||||||||||||| || | ||||| |||| ||||| ||||| Sbjct: 54816 gaggtgctcgtagtaccgccctagccgtgtctagccctgtttgtt 54772 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttgtagttccggtgctccac 459 |||||||||||||||||||| Sbjct: 55143 ttgtagttccggtgctccac 55124
>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence Length = 124271 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 ||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || || || || Sbjct: 72436 tttgctcgtctccacaatacaaccattcatgaccatttcttccaacataaaatgtacctt 72377 Query: 283 ttccagatggaacatgatgtcgagctcgcac 313 ||| | ||| |||||||| || ||||||||| Sbjct: 72376 ttctaaatgaaacatgatatctagctcgcac 72346
>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence Length = 118242 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 223 tttgctcgtctccacgatgcaaccgttcatcaccatctcttcgagcatgaagtgcacttt 282 ||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || || || || Sbjct: 66407 tttgctcgtctccacaatacaaccattcatgaccatttcttccaacataaaatgtacctt 66348 Query: 283 ttccagatggaacatgatgtcgagctcgcac 313 ||| | ||| |||||||| || ||||||||| Sbjct: 66347 ttctaaatgaaacatgatatctagctcgcac 66317
>ref|XM_363836.1| Magnaporthe grisea 70-15 hypothetical protein (MG01762.4) partial mRNA Length = 432 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 301 gtcgagctcgcacacgttgccaaag 325 ||||||||||||||||||||||||| Sbjct: 309 gtcgagctcgcacacgttgccaaag 285
>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence Length = 92099 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 313 cacgttgccaaagtggcggtccatggtttccacgagaagatgtatgaattc 363 |||||||||||| || || ||||||||||| || | |||||||||||||| Sbjct: 81152 cacgttgccaaaatgtcgatccatggtttcgactaagagatgtatgaattc 81102
>ref|NM_021710.1| Mus musculus adaptor-related protein complex AP-4, sigma 1 (Ap4s1), mRNA Length = 1034 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 414 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 369
>gb|BC001985.1| Mus musculus adaptor-related protein complex AP-4, sigma 1, mRNA (cDNA clone MGC:5660 IMAGE:3495981), complete cds Length = 879 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 485 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 440
>ref|XM_744199.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit sigma (Afu2g01570) partial mRNA Length = 447 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgcc 321 ||||||||||||||||| |||||||| Sbjct: 314 atgatgtcgagctcgcatacgttgcc 289
>ref|XM_799034.1| Trypanosoma cruzi strain CL Brener clathrin coat assembly protein AP19 (Tc00.1047053509623.19) partial mRNA Length = 504 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 302 tcgagctcgcacacgttgccaaagtggcggtcca 335 ||||||||||| || |||||||||| |||||||| Sbjct: 305 tcgagctcgcagacattgccaaagtagcggtcca 272
>ref|XM_803925.1| Trypanosoma cruzi strain CL Brener clathrin coat assembly protein AP19 (Tc00.1047053510003.41) partial mRNA Length = 504 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 302 tcgagctcgcacacgttgccaaagtggcggtcca 335 ||||||||||| || |||||||||| |||||||| Sbjct: 305 tcgagctcgcagacattgccaaagtagcggtcca 272
>gb|AF509532.1| Trypanosoma cruzi clathrin assembly protein AP19-like protein (ClaATc) mRNA, complete cds Length = 504 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 302 tcgagctcgcacacgttgccaaagtggcggtcca 335 ||||||||||| || |||||||||| |||||||| Sbjct: 305 tcgagctcgcagacattgccaaagtagcggtcca 272
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 Length = 161126 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgcc 321 ||||||||||||||||| |||||||| Sbjct: 116111 atgatgtcgagctcgcagacgttgcc 116086
>gb|BC053339.1| Mus musculus adaptor-related protein complex AP-4, sigma 1, mRNA (cDNA clone MGC:59060 IMAGE:5370721), complete cds Length = 895 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 245 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 200
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 292 gaacatgatgtcgagctcgcacacgttgcc 321 ||||| ||||||||||||||| |||||||| Sbjct: 1105269 gaacaggatgtcgagctcgcagacgttgcc 1105298 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaagtggcggtccat 336 |||||||| ||||||||||| || || |||| ||||||||| Sbjct: 662711 atgatgtccagctcgcacacattaccgaagtagcggtccat 662671
>dbj|AK005283.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500019B17 product:adaptor-related protein complex AP-4, beta 1, full insert sequence Length = 855 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 235 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 190
>ref|NM_211272.1| Eremothecium gossypii AFR370Cp (AFR370C), mRNA Length = 441 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 292 gaacatgatgtcgagctcgcacacgttgcc 321 ||||| ||||||||||||||| |||||||| Sbjct: 327 gaacaggatgtcgagctcgcagacgttgcc 298
>gb|AF092093.1|AF092093 Mus musculus AP-4 adaptor complex sigma4 subunit mRNA, complete cds Length = 1034 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 414 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 369
>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete sequence Length = 196310 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 542 tgctcgtagtactgcgccagccgcgtctgcccctgcttgttcacca 587 ||||||||||||| | ||| || |||||||| ||||||||||||| Sbjct: 117102 tgctcgtagtacttagacagtcgggtctgcccttgcttgttcacca 117057
>ref|NM_011941.2| Mus musculus mitogen activated protein kinase binding protein 1 (Mapkbp1), mRNA Length = 6943 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 3465 gacgaggaagaagagggaggc 3485
>gb|BC011271.1| Mus musculus mitogen activated protein kinase binding protein 1, mRNA (cDNA clone IMAGE:3710689), partial cds Length = 4060 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 595 gacgaggaagaagagggaggc 615
>ref|XM_754058.1| Ustilago maydis 521 hypothetical protein (UM03004.1) partial mRNA Length = 1086 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaa 324 |||| |||||||||||| ||||||||||| Sbjct: 503 atgaggtcgagctcgcaaacgttgccaaa 475
>ref|NM_001003826.1| Danio rerio adaptor-related protein complex 4, sigma 1 subunit (ap4s1), mRNA Length = 423 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 566 gtctgcccctgcttgttcaccagcagcacgaac 598 ||||||||||| |||||||||| ||||| |||| Sbjct: 41 gtctgcccctgtttgttcaccatcagcaggaac 9
>gb|BC114244.1| Danio rerio adaptor-related protein complex 4, sigma 1 subunit, mRNA (cDNA clone MGC:136677 IMAGE:8004037), complete cds Length = 662 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 566 gtctgcccctgcttgttcaccagcagcacgaac 598 ||||||||||| |||||||||| ||||| |||| Sbjct: 167 gtctgcccctgtttgttcaccatcagcaggaac 135
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 cgctcgtcgagggagaggtgc 544 ||||||||||||||||||||| Sbjct: 222294 cgctcgtcgagggagaggtgc 222314
>gb|BC070449.1| Mus musculus mitogen activated protein kinase binding protein 1, mRNA (cDNA clone MGC:91383 IMAGE:30543913), complete cds Length = 6943 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 3465 gacgaggaagaagagggaggc 3485
>emb|AL596026.13| Zebrafish DNA sequence from clone BUSM1-234G15 in linkage group 17 Contains the sly1 gene for suppressor of ypt1, a novel gene similar to AP4 (adaptor-related protein complex 4, sigma subunit), the 3' part of the strn3 gene for striatin, calmodulin binding protein 3, a novel gene similar to COCH (coagulation factor C homolog, cochlin), a gene for a novel 7 transmembrane receptor (rhodopsin family) and a novel gene similar to KIAA1333, complete sequence Length = 127993 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 566 gtctgcccctgcttgttcaccagcagcacgaac 598 ||||||||||| |||||||||| ||||| |||| Sbjct: 126526 gtctgcccctgtttgttcaccatcagcaggaac 126494
>emb|AL672087.6| Zebrafish DNA sequence from clone BUSM1-115O7 in linkage group 17 Contains the 3' UTR of a novel gene, a novel gene similar to AP4S1 (adaptor-related protein complex 4, sigma 1 subunit) and the 5' part of the strn3 gene for striatin, calmodulin binding protein 3, complete sequence Length = 14900 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 566 gtctgcccctgcttgttcaccagcagcacgaac 598 ||||||||||| |||||||||| ||||| |||| Sbjct: 2869 gtctgcccctgtttgttcaccatcagcaggaac 2901
>emb|BX324186.12| Zebrafish DNA sequence from clone DKEY-18B8 in linkage group 17, complete sequence Length = 153540 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 566 gtctgcccctgcttgttcaccagcagcacgaac 598 ||||||||||| |||||||||| ||||| |||| Sbjct: 117921 gtctgcccctgtttgttcaccatcagcaggaac 117889
>gb|BC064274.1| Xenopus tropicalis adaptor-related protein complex 1, sigma 1 subunit, mRNA (cDNA clone MGC:76308 IMAGE:5379780), complete cds Length = 1165 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaa 324 |||||||| |||||||||||| ||||||| Sbjct: 349 atgatgtccagctcgcacacgctgccaaa 321
>ref|NM_204007.1| Xenopus tropicalis adaptor-related protein complex 1, sigma 1 subunit (MGC76308), mRNA Length = 1165 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaa 324 |||||||| |||||||||||| ||||||| Sbjct: 349 atgatgtccagctcgcacacgctgccaaa 321
>dbj|AK122323.1| Mus musculus mRNA for mKIAA0596 protein Length = 6222 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 2164 gacgaggaagaagagggaggc 2184
>ref|NM_211025.1| Eremothecium gossypii AFR124Wp (AFR124W), mRNA Length = 471 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaagtggcggtccat 336 |||||||| ||||||||||| || || |||| ||||||||| Sbjct: 320 atgatgtccagctcgcacacattaccgaagtagcggtccat 280
>emb|CR942724.2| Xenopus tropicalis finished cDNA, clone TNeu023d20 Length = 1124 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 atgatgtcgagctcgcacacgttgccaaa 324 |||||||| |||||||||||| ||||||| Sbjct: 335 atgatgtccagctcgcacacgctgccaaa 307
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 508 gccctcgagggcgcggcgctcgtcg 532 ||||||| ||||||||||||||||| Sbjct: 1848295 gccctcgcgggcgcggcgctcgtcg 1848319
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 cgacgaggaagaagagggagg 419 ||||||||||||||||||||| Sbjct: 60681 cgacgaggaagaagagggagg 60701
>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete sequence Length = 194045 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 165620 gacgaggaagaagagggaggc 165600
>dbj|AB029482.1| Mus musculus mRNA for JNK-binding protein JNKBP1, complete cds Length = 4684 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gacgaggaagaagagggaggc 420 ||||||||||||||||||||| Sbjct: 3279 gacgaggaagaagagggaggc 3299
>ref|NM_100608.2| Arabidopsis thaliana ATSTP2; carbohydrate transporter/ sugar porter AT1G07340 (ATSTP2) mRNA, complete cds Length = 1685 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 ccgacgaggaagaagagggaggcg 421 |||||||||||||||| ||||||| Sbjct: 416 ccgacgaggaagaagatggaggcg 393
>gb|U72484.1| Fugu rubripes RNA helicase (RNA-H) gene, partial cds; calcium channel beta3 subunit (CAB3B), adenylyl cyclase type VI (AC-VI), glucose-6-phosphate dehydrogenase (G6PD), and L-glycerol-3-phosphate (LG3P) genes, complete cds; and sodium channel 2 (BNaC2) gene, partial cds Length = 61901 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 atttctcctcacacaaaagaggaa 149 |||||| ||||||||||||||||| Sbjct: 1881 atttctactcacacaaaagaggaa 1904
>gb|AC132875.8| Mus musculus chromosome 15, clone RP24-381O23, complete sequence Length = 185786 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ccatgcatacagcagttgtc 121 |||||||||||||||||||| Sbjct: 164038 ccatgcatacagcagttgtc 164019
>ref|XM_654665.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2153.2), mRNA Length = 975 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 aggaagaagagggaggcgta 423 |||||||||||||||||||| Sbjct: 262 aggaagaagagggaggcgta 243
>emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on chromosome 6 Contains a novel gene, a ribosomal protein L12 (RPL12) and five CpG islands, complete sequence Length = 110817 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 cgccagccgcgtctgcccct 575 |||||||||||||||||||| Sbjct: 104010 cgccagccgcgtctgcccct 104029
>emb|AL929545.8| Mouse DNA sequence from clone RP23-306I3 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 198821 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tcaaggatggctaactcatt 381 |||||||||||||||||||| Sbjct: 193932 tcaaggatggctaactcatt 193913
>gb|AF443601.1|AF443601 Oryza sativa clathrin assembly protein AP17-like protein mRNA, complete cds Length = 842 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 121 cgtagtacttggccagccgcgtcttcccctgc 90
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 5601476 cgtagtacttggccagccgcgtcttcccctgc 5601445 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 4301283 cgacgaggaagaagagggag 4301264
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 3771228 cgacgaggaagaagagggag 3771247
>emb|BX813610.1|CNS0AALW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1690 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 ccgacgaggaagaagagggaggcg 421 |||||||||||||||| ||||||| Sbjct: 414 ccgacgaggaagaagatggaggcg 391
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence Length = 104830 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 ccgacgaggaagaagagggaggcg 421 |||||||||||||||| ||||||| Sbjct: 88740 ccgacgaggaagaagatggaggcg 88763
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cctcgagggcgcggcgctcg 529 |||||||||||||||||||| Sbjct: 2703055 cctcgagggcgcggcgctcg 2703074
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 10340 cgacgaggaagaagagggag 10359
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 115579 cgacgaggaagaagagggag 115598
>dbj|AK104086.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F07, full insert sequence Length = 848 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 194 cgtagtacttggccagccgcgtcttcccctgc 163
>dbj|AK069232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010A09, full insert sequence Length = 907 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 195 cgtagtacttggccagccgcgtcttcccctgc 164
>gb|AC172989.2| Mus musculus BAC clone RP24-556J6 from chromosome 15, complete sequence Length = 184996 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ccatgcatacagcagttgtc 121 |||||||||||||||||||| Sbjct: 3221 ccatgcatacagcagttgtc 3202
>dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681N23, complete sequence Length = 185603 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cacaaccacccatgcataca 112 |||||||||||||||||||| Sbjct: 69142 cacaaccacccatgcataca 69123
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ccgacgaggaagaagaggga 417 |||||||||||||||||||| Sbjct: 1031485 ccgacgaggaagaagaggga 1031504
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 5601465 cgtagtacttggccagccgcgtcttcccctgc 5601434 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 4301270 cgacgaggaagaagagggag 4301251
>emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa0056M17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178147 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cgacgaggaagaagagggag 418 |||||||||||||||||||| Sbjct: 150428 cgacgaggaagaagagggag 150447
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 154281 cgtagtacttggccagccgcgtcttcccctgc 154250
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 546 cgtagtactgcgccagccgcgtctgcccctgc 577 ||||||||| ||||||||||||| ||||||| Sbjct: 51409 cgtagtacttggccagccgcgtcttcccctgc 51440
>gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromosome unknown, complete sequence Length = 158903 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 atgatggggtcttcattttcagca 58 |||||||| ||||||||||||||| Sbjct: 18899 atgatgggatcttcattttcagca 18876 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,894,539 Number of Sequences: 3902068 Number of extensions: 4894539 Number of successful extensions: 97352 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96599 Number of HSP's gapped (non-prelim): 744 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)