Clone Information

BLAST Search Result

Clone Name	rbaal18b11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	266	6e-68
2	gb\|AC106887.3\| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom...	266	6e-68
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	266	6e-68
4	dbj\|AK104400.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
5	dbj\|AK104138.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
6	dbj\|AK061303.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
7	ref\|XM_468840.1\| Oryza sativa (japonica cultivar-group), mRNA	258	1e-65
8	dbj\|AK073355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	1e-65
9	gb\|AY111531.1\| Zea mays CL29427_-2 mRNA sequence	194	2e-46
10	gb\|AY105548.1\| Zea mays PCO095526 mRNA sequence	54	4e-04
11	gb\|AC146702.1\| Genomic sequence for Oryza sativa, Nipponbare str...	50	0.007
12	gb\|AC104429.2\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.007
13	dbj\|AK070827.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.007
14	gb\|AC121301.8\| Mus musculus chromosome 7, clone RP23-432H1, comp...	42	1.7
15	emb\|AL591594.9\| Human DNA sequence from clone RP11-424N15 on chr...	42	1.7
16	emb\|AL096772.5\|HSJ365O12 Human DNA sequence from clone RP3-365O1...	42	1.7
17	gb\|AC099757.2\| Homo sapiens chromosome 1 clone RP11-523K4, compl...	42	1.7
18	gb\|AC019050.4\| Homo sapiens BAC clone RP11-92K14 from 2, complet...	42	1.7
19	dbj\|AB065679.1\| Homo sapiens gene for seven transmembrane helix ...	42	1.7
20	gb\|AC171404.5\| Mus musculus chromosome 7, clone RP24-235N21, com...	42	1.7
21	gb\|AC034194.5\| Homo sapiens chromosome 3 clone RP11-669E3 map 3p...	42	1.7
22	gb\|AC026204.5\| Homo sapiens chromosome 3 clone RP11-590A20 map 3...	42	1.7
23	gb\|AC167240.5\| Mus musculus BAC clone RP24-548A13 from chromosom...	40	6.6
24	gb\|BC006631.1\| Mus musculus nuclear mitotic apparatus protein 1,...	40	6.6
25	gb\|BC049791.1\| Mus musculus nuclear mitotic apparatus protein 1,...	40	6.6
26	gb\|BC004667.1\| Mus musculus nuclear mitotic apparatus protein 1,...	40	6.6
27	ref\|NM_133947.2\| Mus musculus nuclear mitotic apparatus protein ...	40	6.6
28	gb\|AC131713.3\| Mus musculus BAC clone RP23-193O18 from chromosom...	40	6.6
29	gb\|AC132297.4\| Mus musculus chromosome 7 clone RP24-330M18, comp...	40	6.6
30	ref\|XM_818290.1\| Trypanosoma brucei TREU927 pumilio RNA-binding ...	40	6.6
31	emb\|CR380838.2\| Pan troglodytes chromosome X BAC RP43-021E02, co...	40	6.6
32	gb\|AC129183.3\| Mus musculus BAC clone RP23-350M13 from chromosom...	40	6.6
33	gb\|AC098723.3\| Mus musculus BAC clone RP23-3D10 from 7, complete...	40	6.6
34	gb\|AC007164.3\| Homo sapiens BAC clone RP11-304A10 from 7, comple...	40	6.6
35	emb\|Z99569.1\|HS106H14 Human DNA sequence from clone RP1-106H14 o...	40	6.6
36	emb\|Z82194.1\|HS272J12 Human DNA sequence from clone RP1-272J12 o...	40	6.6
37	gb\|AC092924.7\| Homo sapiens 3 BAC RP11-788A4 (Roswell Park Cance...	40	6.6
38	gb\|AC146348.42\| Pan troglodytes clone rp43-34i24, complete sequence	40	6.6
39	dbj\|AB212761.1\| Nephila clavata spKv1.1 mRNA for potassium chann...	40	6.6
40	gb\|AC100771.2\| Homo sapiens chromosome 11, clone RP11-159H22, co...	40	6.6
41	dbj\|AK144141.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	6.6
42	gb\|AC013565.10\| Homo sapiens chromosome 15, clone RP11-326A19, c...	40	6.6
43	tpg\|BK000438.1\| TPA: TPA_exp: Homo sapiens RING finger protein C...	40	6.6
44	gb\|AC109363.3\| Homo sapiens BAC clone RP11-799C4 from 2, complet...	40	6.6
45	gb\|AC020547.7\| Homo sapiens BAC clone RP11-134F3 from 2, complet...	40	6.6
46	gb\|AY104202.1\| Zea mays PCO125624 mRNA sequence	40	6.6
47	gb\|AE016877.1\| Bacillus cereus ATCC 14579, complete genome	40	6.6
48	emb\|AL359265.8\| Human DNA sequence from clone RP11-195C7 on chro...	40	6.6
49	gb\|AC150275.2\| Mus musculus BAC clone RP23-409M16 from 7, comple...	40	6.6

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Plus

                                                                            
Query: 154      atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
                |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 18263324 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 18263383

                                                                            
Query: 214      caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
                | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 18263384 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 18263443

                                                                            
Query: 274      aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
                | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 18263444 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 18263503

                                                                            
Query: 334      tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
                ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 18263504 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 18263563

                                                                            
Query: 394      tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
                |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 18263564 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 18263623

                                              
Query: 454      ggctgaactcctgaactgacactgattcca 483
                |||| ||||||||||||| |||||||||||
Sbjct: 18263624 ggctaaactcctgaactgccactgattcca 18263653



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 426     atgtctgggcgaatgttgaagagagttcggctgaactcctg 466
               ||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 5391484 atgtccgggcgcatgttgaagagggtgcggctgaactcctg 5391444

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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
             sequence
          Length = 159579

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Plus

                                                                         
Query: 154   atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
             |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 29755 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 29814

                                                                         
Query: 214   caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
             | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 29815 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 29874

                                                                         
Query: 274   aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
             | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 29875 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 29934

                                                                         
Query: 334   tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
             ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 29935 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 29994

                                                                         
Query: 394   tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
             |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 29995 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 30054

                                           
Query: 454   ggctgaactcctgaactgacactgattcca 483
             |||| ||||||||||||| |||||||||||
Sbjct: 30055 ggctaaactcctgaactgccactgattcca 30084

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Plus

                                                                            
Query: 154      atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
                |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 18256865 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 18256924

                                                                            
Query: 214      caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
                | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 18256925 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 18256984

                                                                            
Query: 274      aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
                | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 18256985 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 18257044

                                                                            
Query: 334      tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
                ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 18257045 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 18257104

                                                                            
Query: 394      tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
                |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 18257105 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 18257164

                                              
Query: 454      ggctgaactcctgaactgacactgattcca 483
                |||| ||||||||||||| |||||||||||
Sbjct: 18257165 ggctaaactcctgaactgccactgattcca 18257194



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 426     atgtctgggcgaatgttgaagagagttcggctgaactcctg 466
               ||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 5390699 atgtccgggcgcatgttgaagagggtgcggctgaactcctg 5390659

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>dbj|AK104400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E03, full
           insert sequence
          Length = 1175

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Minus

                                                                       
Query: 154 atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
           |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 977 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 918

                                                                       
Query: 214 caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
           | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 917 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 858

                                                                       
Query: 274 aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
           | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 857 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 798

                                                                       
Query: 334 tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
           ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 797 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 738

                                                                       
Query: 394 tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
           |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 737 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 678

                                         
Query: 454 ggctgaactcctgaactgacactgattcca 483
           |||| ||||||||||||| |||||||||||
Sbjct: 677 ggctaaactcctgaactgccactgattcca 648

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>dbj|AK104138.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H10, full
           insert sequence
          Length = 1172

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Minus

                                                                       
Query: 154 atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
           |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 974 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 915

                                                                       
Query: 214 caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
           | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 914 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 855

                                                                       
Query: 274 aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
           | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 854 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 795

                                                                       
Query: 334 tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
           ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 794 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 735

                                                                       
Query: 394 tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
           |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 734 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 675

                                         
Query: 454 ggctgaactcctgaactgacactgattcca 483
           |||| ||||||||||||| |||||||||||
Sbjct: 674 ggctaaactcctgaactgccactgattcca 645

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>dbj|AK061303.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G08, full
           insert sequence
          Length = 1070

 Score =  266 bits (134), Expect = 6e-68
 Identities = 281/330 (85%)
 Strand = Plus / Minus

                                                                       
Query: 154 atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
           |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 877 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 818

                                                                       
Query: 214 caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
           | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 817 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 758

                                                                       
Query: 274 aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
           | |||| ||| || |||||||||| |||||| ||||||||||| ||||| || || || |
Sbjct: 757 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccggcacagcaagatctt 698

                                                                       
Query: 334 tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
           ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 697 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 638

                                                                       
Query: 394 tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
           |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 637 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 578

                                         
Query: 454 ggctgaactcctgaactgacactgattcca 483
           |||| ||||||||||||| |||||||||||
Sbjct: 577 ggctaaactcctgaactgccactgattcca 548

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>ref|XM_468840.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 942

 Score =  258 bits (130), Expect = 1e-65
 Identities = 265/310 (85%)
 Strand = Plus / Minus

                                                                       
Query: 174 gcaatgtcatgctggatgtgtcggagcaatacgggggtgacaatgtctggtgagctaagc 233
           ||||||||||||||||||||||| ||||| || ||| |||| ||||| ||||||||||| 
Sbjct: 935 gcaatgtcatgctggatgtgtcgaagcaagacagggatgactatgtccggtgagctaagt 876

                                                                       
Query: 234 tgggggagatggccttcggagggcatcacctcaacgatggaatcgctaccaagatgcttg 293
           ||||| |||||||| || || ||||| ||||| ||||| || |||| ||| || ||||||
Sbjct: 875 tggggtagatggccctcagacggcattacctcgacgattgagtcgccaccgaggtgcttg 816

                                                                       
Query: 294 tgcaagtactctgacaccacaactggcactgctaggtccttggtgctctgaacgatatgg 353
           |||| |||||| ||||||||||| ||||| || || || |||||||||||||| || |||
Sbjct: 815 tgcaggtactcagacaccacaaccggcacagcaagatctttggtgctctgaacaatgtgg 756

                                                                       
Query: 354 catgggaccgagacgagtggtaggagggtgcgcacatcgctctggaagatcgtttgtgca 413
           ||||| || | ||| |||||||||||| | |||||||| ||||||||||| || || || 
Sbjct: 755 catggtacggtgacaagtggtaggaggcttcgcacatcactctggaagattgtctgggcg 696

                                                                       
Query: 414 acgctcagggctatgtctgggcgaatgttgaagagagttcggctgaactcctgaactgac 473
           || ||||||||||||||||| || ||||||||||| || ||||| ||||||||||||| |
Sbjct: 695 acactcagggctatgtctggacgtatgttgaagagtgtgcggctaaactcctgaactgcc 636

                     
Query: 474 actgattcca 483
           ||||||||||
Sbjct: 635 actgattcca 626

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>dbj|AK073355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A08, full
           insert sequence
          Length = 1245

 Score =  258 bits (130), Expect = 1e-65
 Identities = 280/330 (84%)
 Strand = Plus / Minus

                                                                       
Query: 154 atggttgcactacttagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtga 213
           |||||||||| || ||||  ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 976 atggttgcaccacctagaccgcaatgtcatgctggatgtgtcgaagcaagacagggatga 917

                                                                       
Query: 214 caatgtctggtgagctaagctgggggagatggccttcggagggcatcacctcaacgatgg 273
           | ||||| ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |
Sbjct: 916 ctatgtccggtgagctaagttggggtagatggccctcagacggcattacctcgacgattg 857

                                                                       
Query: 274 aatcgctaccaagatgcttgtgcaagtactctgacaccacaactggcactgctaggtcct 333
           | |||| ||| || |||||||||| |||||| ||||||||||| | ||| || || || |
Sbjct: 856 agtcgccaccgaggtgcttgtgcaggtactcagacaccacaaccgccacagcaagatctt 797

                                                                       
Query: 334 tggtgctctgaacgatatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
           ||||||||||||| || |||||||| || | ||| |||||||||||| | |||||||| |
Sbjct: 796 tggtgctctgaacaatgtggcatggtacggtgacaagtggtaggaggcttcgcacatcac 737

                                                                       
Query: 394 tctggaagatcgtttgtgcaacgctcagggctatgtctgggcgaatgttgaagagagttc 453
           |||||||||| || || || || ||||||||||||||||| || ||||||||||| || |
Sbjct: 736 tctggaagattgtctgggcgacactcagggctatgtctggacgtatgttgaagagtgtgc 677

                                         
Query: 454 ggctgaactcctgaactgacactgattcca 483
           |||| ||||||||||||| |||||||||||
Sbjct: 676 ggctaaactcctgaactgccactgattcca 647

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>gb|AY111531.1| Zea mays CL29427_-2 mRNA sequence
          Length = 471

 Score =  194 bits (98), Expect = 2e-46
 Identities = 194/226 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 tagaatgcaatgtcatgctggatgtgtcggagcaatacgggggtgacaatgtctggtgag 227
           |||| ||| ||||||||||||||||| ||||| || || ||||| || |||||||| |||
Sbjct: 242 tagactgcgatgtcatgctggatgtgccggagtaagacaggggttacgatgtctggagag 301

                                                                       
Query: 228 ctaagctgggggagatggccttcggagggcatcacctcaacgatggaatcgctaccaaga 287
           ||||||||||| ||||||||||| || ||||||||||| |||||||| |||| |||||| 
Sbjct: 302 ctaagctggggaagatggccttcagacggcatcacctccacgatggagtcgccaccaagg 361

                                                                       
Query: 288 tgcttgtgcaagtactctgacaccacaactggcactgctaggtccttggtgctctgaacg 347
           ||| |||||| |||||| ||||||||||||||||| || || ||||||||||||||||| 
Sbjct: 362 tgcctgtgcaggtactcagacaccacaactggcaccgcgagatccttggtgctctgaaca 421

                                                         
Query: 348 atatggcatgggaccgagacgagtggtaggagggtgcgcacatcgc 393
           || |||||||||||    ||| | || |||||| ||||||||||||
Sbjct: 422 atgtggcatgggacactaacgtgcgggaggaggctgcgcacatcgc 467

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>gb|AY105548.1| Zea mays PCO095526 mRNA sequence
          Length = 852

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 85/103 (82%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 382 tgcgcacatcgctctggaagatcgtt-tgtgcaacgctcagggctatgtctgggcgaatg 440
           ||||||| ||||||||||||||  || || ||||| || || || ||||| || || || 
Sbjct: 831 tgcgcacgtcgctctggaagattcttctgggcaacactaagcgcaatgtccggacgtata 772

                                                      
Query: 441 ttgaagagagttcggctgaactcctgaactgacactgattcca 483
           |||||||| || | ||| ||||||||||||| |||||||||||
Sbjct: 771 ttgaagagcgtcctgctaaactcctgaactgccactgattcca 729

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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 426   atgtctgggcgaatgttgaagagagttcggctgaactcctg 466
             ||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 97652 atgtccgggcgcatgttgaagagggtgcggctgaactcctg 97612

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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09,
              complete sequence
          Length = 153950

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 426    atgtctgggcgaatgttgaagagagttcggctgaactcctg 466
              ||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 121375 atgtccgggcgcatgttgaagagggtgcggctgaactcctg 121335

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>dbj|AK070827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064N24, full
           insert sequence
          Length = 1487

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 426 atgtctgggcgaatgttgaagagagttcggctgaactcctg 466
           ||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 909 atgtccgggcgcatgttgaagagggtgcggctgaactcctg 869

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>gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, complete sequence
          Length = 205639

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 130    gacctcataaagcttcaatga 150
              |||||||||||||||||||||
Sbjct: 162063 gacctcataaagcttcaatga 162083

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>emb|AL591594.9| Human DNA sequence from clone RP11-424N15 on chromosome 1 Contains the 5'
              end of the ADSS gene for adenylosuccinate synthase, the 5'
              end of the gene for a novel protein (DKFZp686A0738,
              FLJ23552) and two CpG islands, complete sequence
          Length = 152313

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 464    ctgaactgacactgattccag 484
              |||||||||||||||||||||
Sbjct: 124552 ctgaactgacactgattccag 124572

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>emb|AL096772.5|HSJ365O12 Human DNA sequence from clone RP3-365O12 on chromosome 6p11.2-12.3
             Contains the gene for a novel protein similar to KIAA0758
             and two novel genes, complete sequence
          Length = 117636

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 410   tgcaacgctcagggctatgtctggg 434
             ||||| |||||||||||||||||||
Sbjct: 12262 tgcaatgctcagggctatgtctggg 12286

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>gb|AC099757.2| Homo sapiens chromosome 1 clone RP11-523K4, complete sequence
          Length = 154865

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   ctgaactgacactgattccag 484
             |||||||||||||||||||||
Sbjct: 10667 ctgaactgacactgattccag 10687

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>gb|AC019050.4| Homo sapiens BAC clone RP11-92K14 from 2, complete sequence
          Length = 153120

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   ctgaactgacactgattccag 484
             |||||||||||||||||||||
Sbjct: 20550 ctgaactgacactgattccag 20570

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>dbj|AB065679.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds,
             isolate:CBRC7TM_242
          Length = 109156

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 410   tgcaacgctcagggctatgtctggg 434
             ||||| |||||||||||||||||||
Sbjct: 62118 tgcaatgctcagggctatgtctggg 62142

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>gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, complete sequence
          Length = 146054

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    gacctcataaagcttcaatga 150
              |||||||||||||||||||||
Sbjct: 126733 gacctcataaagcttcaatga 126713

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>gb|AC034194.5| Homo sapiens chromosome 3 clone RP11-669E3 map 3p, complete sequence
          Length = 179255

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 464   ctgaactgacactgattccag 484
             |||||||||||||||||||||
Sbjct: 12503 ctgaactgacactgattccag 12483

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>gb|AC026204.5| Homo sapiens chromosome 3 clone RP11-590A20 map 3p, complete sequence
          Length = 171061

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 464    ctgaactgacactgattccag 484
              |||||||||||||||||||||
Sbjct: 104103 ctgaactgacactgattccag 104083

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>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence
          Length = 218177

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   caccacaactggcactgcta 327
             ||||||||||||||||||||
Sbjct: 11317 caccacaactggcactgcta 11298

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>gb|BC006631.1| Mus musculus nuclear mitotic apparatus protein 1, mRNA (cDNA clone
            IMAGE:3481703), complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  caccacaactggcactgcta 327
            ||||||||||||||||||||
Sbjct: 2151 caccacaactggcactgcta 2170

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>gb|BC049791.1| Mus musculus nuclear mitotic apparatus protein 1, mRNA (cDNA clone
            MGC:59410 IMAGE:6505037), complete cds
          Length = 7214

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  caccacaactggcactgcta 327
            ||||||||||||||||||||
Sbjct: 6378 caccacaactggcactgcta 6397

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>gb|BC004667.1| Mus musculus nuclear mitotic apparatus protein 1, mRNA (cDNA clone
           IMAGE:3498604), partial cds
          Length = 1443

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 308 caccacaactggcactgcta 327
           ||||||||||||||||||||
Sbjct: 647 caccacaactggcactgcta 666

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>ref|NM_133947.2| Mus musculus nuclear mitotic apparatus protein 1 (Numa1), mRNA
          Length = 7214

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  caccacaactggcactgcta 327
            ||||||||||||||||||||
Sbjct: 6378 caccacaactggcactgcta 6397

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>gb|AC131713.3| Mus musculus BAC clone RP23-193O18 from chromosome 18, complete
             sequence
          Length = 220193

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    attattatacacattttaaa 44
             ||||||||||||||||||||
Sbjct: 53918 attattatacacattttaaa 53937

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>gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, complete sequence
          Length = 152941

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   caccacaactggcactgcta 327
             ||||||||||||||||||||
Sbjct: 55000 caccacaactggcactgcta 55019

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>ref|XM_818290.1| Trypanosoma brucei TREU927 pumilio RNA-binding protein (Tb10.26.0140)
            partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 244  ggccttcggagggcatcacctcaa 267
            ||||||||| ||||||||||||||
Sbjct: 1582 ggccttcggggggcatcacctcaa 1559

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>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    caagtactctgacaccacaa 315
              ||||||||||||||||||||
Sbjct: 153922 caagtactctgacaccacaa 153903

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>gb|AC129183.3| Mus musculus BAC clone RP23-350M13 from chromosome 3, complete sequence
          Length = 201277

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 104    tgaatcatcaagtaaatgcagata 127
              |||||||||||| |||||||||||
Sbjct: 111153 tgaatcatcaaggaaatgcagata 111130

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>gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete sequence
          Length = 227968

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    caccacaactggcactgcta 327
              ||||||||||||||||||||
Sbjct: 177796 caccacaactggcactgcta 177777

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>gb|AC007164.3| Homo sapiens BAC clone RP11-304A10 from 7, complete sequence
          Length = 89862

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gggggtgacaatgtctggtg 225
             ||||||||||||||||||||
Sbjct: 76758 gggggtgacaatgtctggtg 76739

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>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33
             Contains a CpG island, complete sequence
          Length = 80730

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   caagtactctgacaccacaa 315
             ||||||||||||||||||||
Sbjct: 74383 caagtactctgacaccacaa 74364

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>emb|Z82194.1|HS272J12 Human DNA sequence from clone RP1-272J12 on chromosome 22, complete
             sequence
          Length = 161076

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    atgattattatacacattttaaag 45
             ||||||||||||||||| ||||||
Sbjct: 95500 atgattattatacacatattaaag 95523

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>gb|AC092924.7| Homo sapiens 3 BAC RP11-788A4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155417

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     attattatacacattttaaa 44
              ||||||||||||||||||||
Sbjct: 114451 attattatacacattttaaa 114432

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>gb|AC146348.42| Pan troglodytes clone rp43-34i24, complete sequence
          Length = 165558

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    atgattattatacacattttaaag 45
             ||||||||||||||||| ||||||
Sbjct: 28424 atgattattatacacatattaaag 28447

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>dbj|AB212761.1| Nephila clavata spKv1.1 mRNA for potassium channel Kv1.1, complete
           cds
          Length = 2765

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 agctgggggagatggccttc 250
           ||||||||||||||||||||
Sbjct: 653 agctgggggagatggccttc 672

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>gb|AC100771.2| Homo sapiens chromosome 11, clone RP11-159H22, complete sequence
          Length = 177819

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    tgaactgacactgattccag 484
              ||||||||||||||||||||
Sbjct: 159858 tgaactgacactgattccag 159839

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>dbj|AK144141.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:G430036B18 product:Nuclear mitotic apparatus
            protein 1 (Fragment) homolog [Homo sapiens], full insert
            sequence
          Length = 2936

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  caccacaactggcactgcta 327
            ||||||||||||||||||||
Sbjct: 2165 caccacaactggcactgcta 2184

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>gb|AC013565.10| Homo sapiens chromosome 15, clone RP11-326A19, complete sequence
          Length = 188246

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 141    gcttcaatgagcgatggttgcactactt 168
              |||||||||||| ||| |||||||||||
Sbjct: 164094 gcttcaatgagccatgattgcactactt 164067

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>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds
          Length = 421987

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    atatgattattatacacatt 39
             ||||||||||||||||||||
Sbjct: 16560 atatgattattatacacatt 16579

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>gb|AC109363.3| Homo sapiens BAC clone RP11-799C4 from 2, complete sequence
          Length = 48994

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 36   cattttaaagtaggcaaagatttacaat 63
            ||||| ||||||| ||||||||||||||
Sbjct: 5804 catttaaaagtagacaaagatttacaat 5831

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>gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complete sequence
          Length = 167739

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ttattatacacattttaaag 45
             ||||||||||||||||||||
Sbjct: 62918 ttattatacacattttaaag 62937

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>gb|AY104202.1| Zea mays PCO125624 mRNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 ctcataaagcttcaatgagc 152
           ||||||||||||||||||||
Sbjct: 82  ctcataaagcttcaatgagc 63

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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      attttaaagtaggcaaagat 56
               ||||||||||||||||||||
Sbjct: 3386904 attttaaagtaggcaaagat 3386885

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>emb|AL359265.8| Human DNA sequence from clone RP11-195C7 on chromosome 1 Contains the 5'
              end of the gene for constitutive photomorphogenic protein
              (COP1), a novel gene, a ribosomal protein L13 (RPL13)
              pseudogene, a novel pseudogene and a CpG island, complete
              sequence
          Length = 155805

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     atatgattattatacacatt 39
              ||||||||||||||||||||
Sbjct: 139246 atatgattattatacacatt 139227

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>gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, complete sequence
          Length = 224935

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    caccacaactggcactgcta 327
              ||||||||||||||||||||
Sbjct: 151578 caccacaactggcactgcta 151597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,829,974
Number of Sequences: 3902068
Number of extensions: 3829974
Number of successful extensions: 69122
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68980
Number of HSP's gapped (non-prelim): 141
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result