ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal18a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAS17_YEAST (Q12446) Proline-rich protein LAS17 33 0.24
2NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 28 4.6
3NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 28 4.6
4NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fr... 28 6.0
5HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH... 28 6.0
6AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 28 7.8
7CYTSA_TETNG (Q2KN95) Cytospin-A 28 7.8
8CYTSA_FUGRU (Q2KN94) Cytospin-A 28 7.8

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 153 RRCRQAHTPRRDGRFENY---YSVRGRDTIHVRAHQQPPPPPHDRSTMNS 293
           ++ +  H PR +   +N    Y+    DTI    H+ PPPPP    T +S
Sbjct: 148 QKSQVVHGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAETFDS 197



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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 269
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 269
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = +3

Query: 231 IHVRAHQQPP---PPPHDRSTMN 290
           +H  +H++PP   PPPH++S M+
Sbjct: 267 VHPPSHEKPPFVYPPPHEKSPMH 289



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>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 462

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 RRCRQAHTPRRDGRFENYYSVRGRDTI 233
           RR  + + PR    +ENYYS  G D +
Sbjct: 346 RRALRCYKPRLKATYENYYSSNGLDAV 372



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>AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 903

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 246 HQQPPPPPHDRSTM 287
           HQ PPPPPH  S++
Sbjct: 109 HQPPPPPPHSLSSL 122



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>CYTSA_TETNG (Q2KN95) Cytospin-A|
          Length = 1113

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 148 FKSASFSQYSTCCTTFPTFCIVPVPRTPFNPA 53
           F SAS    S+  +  PT    P+PRTP +P+
Sbjct: 832 FDSASQGPPSSGASVTPTASAAPLPRTPLSPS 863



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>CYTSA_FUGRU (Q2KN94) Cytospin-A|
          Length = 1118

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 148 FKSASFSQYSTCCTTFPTFCIVPVPRTPFNPA 53
           F SAS    S   +  PT    P+PRTP +P+
Sbjct: 837 FDSASQGPPSNGASVTPTVSAAPLPRTPLSPS 868


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,652,013
Number of Sequences: 219361
Number of extensions: 743928
Number of successful extensions: 4098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3655
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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