ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUIS_SUNMU (O62653) Sucrase-isomaltase, intestinal [Contains: Su... 32 1.3
2C26AA_BACTF (Q9X597) Pesticidal crystal protein cry26Aa (Insecti... 29 8.6
3TECT2_RAT (Q3B7D3) Tectonic-2 precursor 29 8.6

>SUIS_SUNMU (O62653) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
            3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1812

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 375  RYRSIG*IFWETCIDWSICMSDQLTQKCT 289
            R RS G IFW++C+ W + + +Q  Q  T
Sbjct: 1060 RRRSTGRIFWDSCLPWGLLLMNQFIQIST 1088



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>C26AA_BACTF (Q9X597) Pesticidal crystal protein cry26Aa (Insecticidal|
           delta-endotoxin CryXXVIA(a)) (Crystaline entomocidal
           protoxin) (131 kDa crystal protein)
          Length = 1163

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 112 STQTTNIGRIVHFPTFQLEFKGLNSKQTQSKQQG 213
           +T+T N G IV+  + +L F+G N  +T S  QG
Sbjct: 380 TTETRNYGTIVNHDSVELNFEGKNIYKTGSLPQG 413



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>TECT2_RAT (Q3B7D3) Tectonic-2 precursor|
          Length = 700

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 392 HFMFKWMNNWASS-ESTLVSA*LAAHERTCLLPARNIK 502
           H++F+W NN  SS + T++ A + AH+R  +     +K
Sbjct: 382 HYVFRWQNNSISSLDITIIRAEINAHQRGTMTQRFTVK 419


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,494,026
Number of Sequences: 219361
Number of extensions: 1666409
Number of successful extensions: 3289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3289
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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