ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal17k22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
2dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
3dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
4gb|AC126538.1| Homo sapiens chromosome 16 clone CTD-3225F13, com... 42 2.0
5gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 42 2.0
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
7gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, co... 42 2.0
8emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4,... 42 2.0
9gb|AC166573.2| Mus musculus BAC clone RP23-153H18 from chromosom... 40 7.9
10gb|AC154791.3| Mus musculus BAC clone RP24-482P18 from chromosom... 40 7.9
11gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, com... 40 7.9
12gb|AC134910.5| Mus musculus BAC clone RP23-405O11 from chromosom... 40 7.9
13gb|AY812714.1| Schistosoma japonicum SJCHGC04035 protein mRNA, p... 40 7.9
14gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome... 40 7.9
15gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, comple... 40 7.9
16gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
17gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete s... 40 7.9
18emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 o... 40 7.9
19emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chro... 40 7.9
20emb|AL353193.7| Human DNA sequence from clone RP11-137F15 on chr... 40 7.9
21emb|AL031671.12|HS688G8 Human DNA sequence from clone RP4-688G8 ... 40 7.9
22emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in... 40 7.9
23gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete seq... 40 7.9
24gb|AC154201.2| Mus musculus BAC clone RP24-83I8 from chromosome ... 40 7.9
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
27gb|AF333035.1|AF333035 Strongylocentrotus purpuratus syntaxin mR... 40 7.9
28dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
29dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
30gb|DQ020485.1| Sus scrofa clone BAC KNP_244B5, complete sequence 40 7.9
31gb|AC004093.1|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10... 40 7.9
32dbj|AK108610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
33gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone... 40 7.9
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
35gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, comple... 40 7.9
36emb|Z81001.1|HSV1049C4 Human DNA sequence from clone GHc-1049C4 ... 40 7.9
37emb|CT010502.13| Mouse DNA sequence from clone RP23-27H19 on chr... 40 7.9
38gb|AF015486.1|AF015486 Strongylocentrotus purpuratus syntaxin mR... 40 7.9
39emb|AL732616.3| Mouse DNA sequence from clone RP23-466D3 on chro... 40 7.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 22       acataacaagggaatctttaggagtttgggggcattggaaacaccatt 69
                |||||||||| |||||||||||  ||||||  || |||||||||||||
Sbjct: 29808766 acataacaagagaatctttagggatttgggatcactggaaacaccatt 29808813
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>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_F03
          Length = 110783

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 22     acataacaagggaatctttaggagtttgggggcattggaaacaccatt 69
              |||||||||| |||||||||||  ||||||  || |||||||||||||
Sbjct: 106896 acataacaagagaatctttagggatttgggatcactggaaacaccatt 106943
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0481E08
          Length = 171965

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                            
Query: 22   acataacaagggaatctttaggagtttgggggcattggaaacaccatt 69
            |||||||||| |||||||||||  ||||||  || |||||||||||||
Sbjct: 4279 acataacaagagaatctttagggatttgggatcactggaaacaccatt 4326
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>gb|AC126538.1| Homo sapiens chromosome 16 clone CTD-3225F13, complete sequence
          Length = 188015

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   ttggtgtgctaaaacaaaaga 256
             |||||||||||||||||||||
Sbjct: 81429 ttggtgtgctaaaacaaaaga 81449
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 494     aacatcaaggatatccatctt 514
               |||||||||||||||||||||
Sbjct: 2376944 aacatcaaggatatccatctt 2376964
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 381      gagtagcactgcatttcatgt 401
                |||||||||||||||||||||
Sbjct: 17821307 gagtagcactgcatttcatgt 17821327
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>gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, complete sequence
          Length = 167080

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    ttggtgtgctaaaacaaaaga 256
              |||||||||||||||||||||
Sbjct: 138610 ttggtgtgctaaaacaaaaga 138630
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>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04,
             complete sequence
          Length = 164645

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   gagtagcactgcatttcatgt 401
             |||||||||||||||||||||
Sbjct: 18062 gagtagcactgcatttcatgt 18082
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>gb|AC166573.2| Mus musculus BAC clone RP23-153H18 from chromosome 17, complete
             sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   ttggtctgacatgcatatgctcca 330
             |||||| |||||||||||||||||
Sbjct: 47989 ttggtcagacatgcatatgctcca 48012
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>gb|AC154791.3| Mus musculus BAC clone RP24-482P18 from chromosome 16, complete sequence
          Length = 188918

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tatgtgcaacacatatgcag 88
              ||||||||||||||||||||
Sbjct: 173321 tatgtgcaacacatatgcag 173302
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>gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, complete sequence
          Length = 198070

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  cctttccggagtagcactgcattt 396
            |||||| |||||||||||||||||
Sbjct: 6246 cctttcaggagtagcactgcattt 6223
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>gb|AC134910.5| Mus musculus BAC clone RP23-405O11 from chromosome 5, complete sequence
          Length = 200538

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   aaagacttgaatacttttaactat 275
             |||||||| |||||||||||||||
Sbjct: 50288 aaagactttaatacttttaactat 50311
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>gb|AY812714.1| Schistosoma japonicum SJCHGC04035 protein mRNA, partial cds
          Length = 1352

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 caaacaacaaggctgcacca 220
           ||||||||||||||||||||
Sbjct: 940 caaacaacaaggctgcacca 921
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>gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome 18, complete sequence
          Length = 140990

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 373   cctttccggagtagcactgcattt 396
             |||||| |||||||||||||||||
Sbjct: 62234 cctttcaggagtagcactgcattt 62211
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>gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, complete sequence
          Length = 199474

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   caagtggatgaataactggg 422
             ||||||||||||||||||||
Sbjct: 52212 caagtggatgaataactggg 52193
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>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   tcccaaaaaattcaaccgat 363
             ||||||||||||||||||||
Sbjct: 40320 tcccaaaaaattcaaccgat 40301
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>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence
          Length = 116179

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ttgaatacttttaactattc 277
             ||||||||||||||||||||
Sbjct: 85609 ttgaatacttttaactattc 85628
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>emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 on chromosome X Contains a
             histone H2B family pseudogene, a novel pseudogene and a
             NADH dehydrogenase 6 (MTND6) pseudogene, complete sequence
          Length = 110715

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   gaactgcttttgctggactt 561
             ||||||||||||||||||||
Sbjct: 60939 gaactgcttttgctggactt 60920
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>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 544   actgcttttgctggacttatattt 567
             ||||||||||||| ||||||||||
Sbjct: 87565 actgcttttgctgaacttatattt 87542
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>emb|AL353193.7| Human DNA sequence from clone RP11-137F15 on chromosome 20 Contains a
             pseudogene similar to a TCEAL1 (transcription elongation
             factor A (SII)-like 1, the 5' part of the ATRN gene for
             attractin with dipeptidylpeptidase IV activity and a CpG
             island, complete sequence
          Length = 51371

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   acaactaatatagggcgcat 140
             ||||||||||||||||||||
Sbjct: 32815 acaactaatatagggcgcat 32796
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>emb|AL031671.12|HS688G8 Human DNA sequence from clone RP4-688G8 on chromosome 20q11.2-12
             Contains the RPS2L1 gene for ribosomal protein S2-like 1
             (pseudogene), the gene for protease inhibitor WAP9 (WAP9),
             the C20orf46 gene for WAP10 precursor, the gene for
             protease inhibitor WAP11 (WAP11), the 3' end of the gene
             for protease inhibitor WAP12 (WAP12) and a CpG island,
             complete sequence
          Length = 116380

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   tatccatcttgtataactga 524
             ||||||||||||||||||||
Sbjct: 77649 tatccatcttgtataactga 77668
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>emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in linkage group 7,
            complete sequence
          Length = 161194

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  cagagcaaacaacaaggctg 215
            ||||||||||||||||||||
Sbjct: 4598 cagagcaaacaacaaggctg 4617
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>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence
          Length = 127568

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ttgaatacttttaactattc 277
             ||||||||||||||||||||
Sbjct: 98525 ttgaatacttttaactattc 98506
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>gb|AC154201.2| Mus musculus BAC clone RP24-83I8 from chromosome 16, complete sequence
          Length = 172923

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tatgtgcaacacatatgcag 88
              ||||||||||||||||||||
Sbjct: 137938 tatgtgcaacacatatgcag 137957
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 344      tcccaaaaaattcaaccgat 363
                ||||||||||||||||||||
Sbjct: 22300978 tcccaaaaaattcaaccgat 22300997
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 239      gtgtgctaaaacaaaagact 258
                ||||||||||||||||||||
Sbjct: 21523426 gtgtgctaaaacaaaagact 21523445
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>gb|AF333035.1|AF333035 Strongylocentrotus purpuratus syntaxin mRNA, complete cds
          Length = 867

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aacagcaaacaaactcagagcaaa 204
           ||||||||||||| ||||||||||
Sbjct: 252 aacagcaaacaaagtcagagcaaa 275
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>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   gtgtgctaaaacaaaagact 258
             ||||||||||||||||||||
Sbjct: 12376 gtgtgctaaaacaaaagact 12395
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>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0020C11
          Length = 163328

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    gtgtgctaaaacaaaagact 258
              ||||||||||||||||||||
Sbjct: 118353 gtgtgctaaaacaaaagact 118372
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>gb|DQ020485.1| Sus scrofa clone BAC KNP_244B5, complete sequence
          Length = 151947

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 511   tcttgtataactgagtgaaataaa 534
             ||||||||||||||||||| ||||
Sbjct: 27341 tcttgtataactgagtgaattaaa 27318
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>gb|AC004093.1|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10817, complete sequence
          Length = 157684

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    aaagacttgaatacttttaactat 275
              |||||||| |||||||||||||||
Sbjct: 146909 aaagactttaatacttttaactat 146932
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>dbj|AK108610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A07, full
            insert sequence
          Length = 1444

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 26   aacaagggaatctttaggagtttgggggcattggaaacaccatt 69
            |||||| |||||||||||  ||||||  || |||||||||||||
Sbjct: 1444 aacaagagaatctttagggatttgggatcactggaaacaccatt 1401
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>gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone rp23-352p20, complete
             sequence
          Length = 183187

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 373   cctttccggagtagcactgcattt 396
             |||||| |||||||||||||||||
Sbjct: 13946 cctttcaggagtagcactgcattt 13969
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 344      tcccaaaaaattcaaccgat 363
                ||||||||||||||||||||
Sbjct: 22610889 tcccaaaaaattcaaccgat 22610908
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>gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, complete sequence
          Length = 163028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   caagtggatgaataactggg 422
             ||||||||||||||||||||
Sbjct: 40277 caagtggatgaataactggg 40296
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>emb|Z81001.1|HSV1049C4 Human DNA sequence from clone GHc-1049C4 on chromosome X, complete
             sequence
          Length = 41275

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   gaactgcttttgctggactt 561
             ||||||||||||||||||||
Sbjct: 11268 gaactgcttttgctggactt 11249
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>emb|CT010502.13| Mouse DNA sequence from clone RP23-27H19 on chromosome 17, complete
              sequence
          Length = 246273

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 307    ttggtctgacatgcatatgctcca 330
              |||||| |||||||||||||||||
Sbjct: 130987 ttggtcagacatgcatatgctcca 130964
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>gb|AF015486.1|AF015486 Strongylocentrotus purpuratus syntaxin mRNA, partial cds
          Length = 604

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aacagcaaacaaactcagagcaaa 204
           ||||||||||||| ||||||||||
Sbjct: 200 aacagcaaacaaagtcagagcaaa 223
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>emb|AL732616.3| Mouse DNA sequence from clone RP23-466D3 on chromosome 2, complete
             sequence
          Length = 123372

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   ctagctggcagctcatgaaa 470
             ||||||||||||||||||||
Sbjct: 37309 ctagctggcagctcatgaaa 37290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,691,051
Number of Sequences: 3902068
Number of extensions: 5691051
Number of successful extensions: 95257
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95004
Number of HSP's gapped (non-prelim): 253
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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