Clone Name	rbaal17k17
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1114	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	900	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	876	0.0
4	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	686	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	664	0.0
6	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	632	e-178
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-144
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	442	e-121
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	2e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	9e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	9e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	9e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	9e-28
21	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	129	1e-26
22	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
23	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	123	9e-25
24	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	123	9e-25
25	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	8e-19
28	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	5e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	88	5e-14
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	5e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	5e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
38	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	1e-05
39	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	1e-05
40	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	1e-05
41	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	2e-04
42	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	52	0.003
43	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.003
44	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.041
45	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	48	0.041
46	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	48	0.041
47	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	48	0.041
48	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.041
49	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.64
50	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.64
51	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.64
52	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.64
53	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	44	0.64
54	gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co...	42	2.5
55	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.5
56	gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 5...	42	2.5
57	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.5
58	emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ...	42	2.5
59	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.5
60	gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c...	42	2.5
61	gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com...	42	2.5
62	dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK...	42	2.5
63	emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i...	42	2.5
64	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.5
65	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.5
66	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.5
67	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.5
68	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.5
69	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.5
70	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	9.9
71	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	9.9
72	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	9.9
73	gb|AY176327.1| Staphylococcus phage K, complete genome	40	9.9
74	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	9.9
75	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	9.9
76	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	9.9
77	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	9.9
78	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	9.9
79	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	9.9
80	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	9.9
81	emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chr...	40	9.9
82	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	9.9
83	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	9.9
84	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	9.9
85	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	9.9
86	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	9.9
87	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	9.9
88	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	9.9
89	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	9.9
90	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	9.9
91	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	9.9
92	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	9.9
93	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	9.9
94	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	9.9
95	gb|AY954969.1| Bacteriophage G1, complete genome	40	9.9
96	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	9.9
97	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	9.9
98	emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in...	40	9.9
99	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	9.9

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1114 bits (562), Expect = 0.0
 Identities = 603/610 (98%), Gaps = 5/610 (0%)
 Strand = Plus / Minus

                                                                        
Query: 122  tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 180
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 181  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 239
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 240  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 298
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 299  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 357
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                                                        
Query: 358  cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 416
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410

                                                                        
Query: 417  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1350

                                                                        
Query: 477  gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 1290

                                                                        
Query: 537  agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 1230

                                                                        
Query: 597  agcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcg 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 agcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcg 1170

                                                                        
Query: 657  tacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacg 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacg 1110

                      
Query: 717  atcttgacga 726
            ||||| ||||
Sbjct: 1109 atctttacga 1100

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  900 bits (454), Expect = 0.0
 Identities = 595/639 (93%), Gaps = 11/639 (1%)
 Strand = Plus / Minus

                                                                       
Query: 94  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 153
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 154 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 208
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 209 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 267
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 268 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 327
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                       
Query: 328 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 387
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                                                       
Query: 388 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 447
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449

                                                                       
Query: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389

                                                                       
Query: 508 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 567
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 388 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 329

                                                                       
Query: 568 aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 627
           ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 328 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 269

                                                                       
Query: 628 agccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagt 687
           ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 209

                                                  
Query: 688 caatggattgtcctgggaaggtgtcgacgatcttgacga 726
           | |||||||||||||||||||||||||||||||||||||
Sbjct: 208 cgatggattgtcctgggaaggtgtcgacgatcttgacga 170

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  876 bits (442), Expect = 0.0
 Identities = 546/578 (94%), Gaps = 7/578 (1%)
 Strand = Plus / Minus

                                                                        
Query: 155  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 208
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 209  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 268
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 269  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 328
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 329  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 388
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 389  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 448
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 449  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 509  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 568
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                                                                        
Query: 569  ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 628
            |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118

                                                                        
Query: 629  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 688
            |   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058

                                                  
Query: 689  aatggattgtcctgggaaggtgtcgacgatcttgacga 726
             |||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gatggattgtcctgggaaggtgtcgacgatcttgacga 1020

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  686 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                        
Query: 9    ataagctgaagctcaaattaatactttcttgttctgtttgcaacaaagcagaaggagtct 68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7872 ataagctgaagctcaaattaatactttcttgttctgtttgcaacaaagcagaaggagtct 7813

                                                                        
Query: 69   ccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtattggtctttgcca 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7812 ccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtattggtctttgcca 7753

                                                                        
Query: 129  aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 188
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 189  atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                                        
Query: 249  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 7573

                                                              
Query: 309  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                        
Query: 354  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 414  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 474  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                        
Query: 534  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116

                                                                        
Query: 594  accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056

                                               
Query: 654  tcgtacacccgagcacgcagagcaccgaaaaagtc 688
            |||||||||||||||||||||||||||||||||||
Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 629  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 688
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                    
Query: 689  aatggattgtcctgggaaggtgtc 712
             ||||| || || |||||||||||
Sbjct: 3752 gatggactgccccgggaaggtgtc 3729



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 480  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 539
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 540  ttctcgactgtcatctttggctgctcgaa 568
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                   
Query: 688  caatggattgtcctgggaaggtgtcgacgatcttgacga 726
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacga 6842

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  664 bits (335), Expect = 0.0
 Identities = 510/565 (90%), Gaps = 9/565 (1%)
 Strand = Plus / Minus

                                                                        
Query: 169  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 222
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 223  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 281
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 282  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 341
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 342  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 401
             ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356

                                                                        
Query: 402  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 461
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                                        
Query: 462  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 521
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236

                                                                        
Query: 522  tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 581
            || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176

                                                                        
Query: 582  tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 641
            |||||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||
Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116

                                                                        
Query: 642  cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 701
            ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056

                                     
Query: 702  gggaaggtgtcgacgatcttgacga 726
            ||||| |||||||||||||||||||
Sbjct: 1055 gggaangtgtcgacgatcttgacga 1031

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  632 bits (319), Expect = e-178
 Identities = 322/323 (99%)
 Strand = Plus / Minus

                                                                        
Query: 404  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 464  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 524  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                                                                        
Query: 584  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928

                                                                        
Query: 644  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868

                                   
Query: 704  gaaggtgtcgacgatcttgacga 726
            |||||||||||||||||| ||||
Sbjct: 867  gaaggtgtcgacgatctttacga 845



 Score =  448 bits (226), Expect = e-122
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 127  caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 186
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 187  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 247  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 307  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-144
 Identities = 296/307 (96%)
 Strand = Plus / Minus

                                                                       
Query: 382 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 441
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 442 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 502 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                                                       
Query: 562 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 621
           |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69

                                                                       
Query: 622 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 681
           ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68  cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9

                  
Query: 682 aaaagtc 688
           |||||||
Sbjct: 8   aaaagtc 2

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  442 bits (223), Expect = e-121
 Identities = 298/323 (92%)
 Strand = Plus / Minus

                                                                        
Query: 404  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 463
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 464  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 523
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 524  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 583
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                                                                        
Query: 584  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 643
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124

                                                                        
Query: 644  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 703
            |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064

                                   
Query: 704  gaaggtgtcgacgatcttgacga 726
            |||||||||||||||||||||||
Sbjct: 1063 gaaggtgtcgacgatcttgacga 1041



 Score =  176 bits (89), Expect = 7e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 228  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 287
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 288  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 347
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 348  tcctttacc 356
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacga 987

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacga 1025

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacga 1024

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                       
Query: 633 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                             
Query: 693 gattgtcctgggaaggtgtcgacgatcttgacga 726
           ||||| ||||||||| ||||||||||||||||||
Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacga 808

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacga 1029

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 237    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 297    ggcattttggtcggtgcaaccttccggcacgggca 331
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 400    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 459
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 460    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 519
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                                          
Query: 520    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 579
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485

                                                   
Query: 580    cgtcccgcgagttcaccagcctcttgccaatgttctc 616
              | |||| ||||||||||||||||||||||||||||||
Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 690    atggattgtcctgggaaggtgtcgacgatcttgacga 726
              |||||||| ||||||||| ||||||||||||||||||
Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacga 108724



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 255    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 314
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 315    accttccggcacggg 329
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 633    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 682
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 588    gagttcaccagcctcttgccaatgttctc 616
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 237   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 297   ggcattttggtcggtgcaaccttccggcacgggca 331
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                         
Query: 400   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 459
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 460   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 519
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                                         
Query: 520   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 579
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362

                                                  
Query: 580   cgtcccgcgagttcaccagcctcttgccaatgttctc 616
             | |||| ||||||||||||||||||||||||||||||
Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 690   atggattgtcctgggaaggtgtcgacgatcttgacga 726
             |||||||| ||||||||| ||||||||||||||||||
Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacga 30601



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 255   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 314
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 315   accttccggcacggg 329
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 633   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 682
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 588   gagttcaccagcctcttgccaatgttctc 616
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 297  ggcattttggtcggtgcaaccttccggcacgggca 331
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacga 993

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 297  ggcattttggtcggtgcaaccttccggcacgggca 331
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 405  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 464
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 465  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 524
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                                        
Query: 525  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 584
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130

                                            
Query: 585  cgcgagttcaccagcctcttgccaatgttctc 616
            | ||||||||||||||||||||||||||||||
Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacga 988

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 297      ggcattttggtcggtgcaaccttccggcacgggca 331
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 400      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 459
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 460      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 519
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                            
Query: 520      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 579
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624

                                                     
Query: 580      cgtcccgcgagttcaccagcctcttgccaatgttctc 616
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 690      atggattgtcctgggaaggtgtcgacgatcttgacga 726
                |||||||| ||||||||| ||||||||||||||||||
Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacga 28303863



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 255      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 314
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 315      accttccggcacggg 329
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 633      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 682
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 588      gagttcaccagcctcttgccaatgttctc 616
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 297      ggcattttggtcggtgcaaccttccggcacgggca 331
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 400      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 459
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 460      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 519
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                            
Query: 520      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 579
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073

                                                     
Query: 580      cgtcccgcgagttcaccagcctcttgccaatgttctc 616
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 690      atggattgtcctgggaaggtgtcgacgatcttgacga 726
                |||||||| ||||||||| ||||||||||||||||||
Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacga 28286312



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 255      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 314
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 315      accttccggcacggg 329
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 633      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 682
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 588      gagttcaccagcctcttgccaatgttctc 616
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 297  ggcattttggtcggtgcaaccttccggcacgggca 331
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 405  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 464
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 465  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 524
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                                        
Query: 525  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 584
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165

                                            
Query: 585  cgcgagttcaccagcctcttgccaatgttctc 616
            | ||||||||||||||||||||||||||||||
Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacga 1023

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  129 bits (65), Expect = 1e-26
 Identities = 191/233 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 539
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 540  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 599
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 600  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 659
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                                 
Query: 660  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 712
            ||||| || ||||| || ||||| ||||| ||||| || || |||||||||||
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtc 1010

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Minus

                                                                        
Query: 401  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 460
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 461  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 520
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                                        
Query: 521  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 580
            ||  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828

                                       
Query: 581  gtcccgcgagttcaccagcctcttgcc 607
             ||| ||||||||||||||||||||||
Sbjct: 827  ctccagcgagttcaccagcctcttgcc 801



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 635 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 694
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                        
Query: 695 ttgtcctgggaaggtgtcgacgatcttga 723
           ||| || |||||||||||||||| |||||
Sbjct: 713 ttggccggggaaggtgtcgacgagcttga 685



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 306
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 307  tcggtgcaaccttc 320
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                       
Query: 403 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 463 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                                       
Query: 523 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386

                                             
Query: 583 cccgcgagttcaccagcctcttgccaatgttctc 616
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                       
Query: 633 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                             
Query: 693 gattgtcctgggaaggtgtcgacgatcttgacga 726
           ||||| ||||||||| ||||||||||||||||||
Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacga 242

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  123 bits (62), Expect = 9e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 403  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 462
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 463  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 522
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                                        
Query: 523  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 582
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180

                                              
Query: 583  cccgcgagttcaccagcctcttgccaatgttctc 616
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 297  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 353
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 354  acctcctcct 363
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                        
Query: 633  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                              
Query: 693  gattgtcctgggaaggtgtcgacgatcttgacga 726
            ||||| ||||||||| ||||||||||||||||||
Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacga 1036

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 243 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 302
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 303 ttggtcggtgcaaccttccggcacgggca 331
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 408  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 467
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 468  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 527
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 528  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 587
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 588  gagttcaccagcctcttgcc 607
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 635 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 694
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                        
Query: 695 ttgtcctgggaaggtgtcgacgatcttga 723
           ||| || |||||||||||||||| |||||
Sbjct: 907 ttggccggggaaggtgtcgacgagcttga 879



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 306
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 307  tcggtgcaaccttc 320
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 8e-19
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                        
Query: 401  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 460
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249

                                                                        
Query: 461  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 520
            ||||| |||  |||| || |||||||| | ||| || || ||||| ||||| || |||||
Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189

                                                                        
Query: 521  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 580
             |  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129

                                    
Query: 581  gtcccgcgagttcaccagcctctt 604
             ||| |||||||||||||||||||
Sbjct: 1128 ctccagcgagttcaccagcctctt 1105



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 635  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 694
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                         
Query: 695  ttgtcctgggaaggtgtcgacgatcttga 723
            ||| || |||||||||||||||| |||||
Sbjct: 1014 ttggccggggaaggtgtcgacgagcttga 986



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 306
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 307  tcggtgcaaccttc 320
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 297 ggcattttggtcggtgcaaccttccggcacgggca 331
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 408  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 467
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 468  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 527
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 528  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 587
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 588  gagttcaccagcctctt 604
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 635 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 694
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                        
Query: 695 ttgtcctgggaaggtgtcgacgatcttga 723
           ||| || |||||||||||||||| |||||
Sbjct: 877 ttggccggggaaggtgtcgacgagcttga 849



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 247  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 306
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 307  tcggtgcaaccttc 320
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 409 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 468
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 469 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 528
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 529 actctagcagcttctcgactgtcatctttggctgctcgaa 568
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 645 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 704
           ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                      
Query: 705 aaggtgtcgac 715
           |||||||||||
Sbjct: 623 aaggtgtcgac 613

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 409  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 468
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 469  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 528
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 529  actctagcagcttctcgactgtcatctttggctgctcgaa 568
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 645  acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 704
            ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                       
Query: 705  aaggtgtcgac 715
            |||||||||||
Sbjct: 1018 aaggtgtcgac 1008

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 409  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 468
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 469  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 528
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 529  actctagcagcttctcgactgtcatctttggctgctcgaa 568
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 629  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 688
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                    
Query: 689  aatggattgtcctgggaaggtgtc 712
             ||||| || || |||||||||||
Sbjct: 1183 gatggactgccccgggaaggtgtc 1160



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 480  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 539
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 540  ttctcgactgtcatctttggctgctcgaa 568
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 426 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 485
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 486 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 541
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 237     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 297     ggcattttggtcggtgcaaccttccggcacgggca 331
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 237   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 296
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 297   ggcattttggtcggtgcaaccttccggcacgggca 331
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 671  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 712
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 671  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 724
            |||||||||||| || ||||| |||||||| |||||| | ||||||||||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 651  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 710
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 711  tc 712
            ||
Sbjct: 2663 tc 2662

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 651  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 710
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 711  tc 712
            ||
Sbjct: 973  tc 972

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 437  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 496
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 497  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 556
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 557  tggctgctcgaa 568
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 635  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 694
            |||||| | ||| ||||||||||| |||| ||| | ||  ||||| || || ||||| ||
Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106

                              
Query: 695  ttgtcctgggaaggtgtc 712
            ||| ||||||||||||||
Sbjct: 1105 ttggcctgggaaggtgtc 1088

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 675  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 724
            |||||||| || ||||| ||||| || |||||||||||||||| ||||||
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgac 1115

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 634  cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 693
            ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 694  attgtcctgggaaggtgtcgac 715
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 654 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 713
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885

               
Query: 714 acga 717
           ||||
Sbjct: 884 acga 881

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 633 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 692
           |||||||| | ||| ||||| |||||||| | ||| | ||  |||||||| || || |||
Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530

                                           
Query: 693 gattgtcctgggaaggtgtcgacgatcttgac 724
           ||||| || ||||||||||| || ||||||||
Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 651 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 710
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559

                           
Query: 711 tcgacgatcttgacga 726
           ||||||| || |||||
Sbjct: 558 tcgacgagctggacga 543

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 651 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 710
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567

                           
Query: 711 tcgacgatcttgacga 726
           ||||||| || |||||
Sbjct: 566 tcgacgagctggacga 551

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 654 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 713
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886

               
Query: 714 acga 717
           ||||
Sbjct: 885 acga 882

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 429  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 478
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 675 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 724
           |||||||||||||| || |||||||| |||||| | || || ||||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 442   catcacccagagctgcctggct 463
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 142   aatatatttagagatatattaa 163
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 648  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 707
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246

                      
Query: 708  gtgtcgacga 717
            | ||| ||||
Sbjct: 1245 gcgtcaacga 1236

---

>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     aatgataagtaggtgtattgg 119
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   tatatttagagatatattaac 164
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 55 of 218 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 26   ttaatactttcttgttctgtt 46
            |||||||||||||||||||||
Sbjct: 5007 ttaatactttcttgttctgtt 4987

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 702  gggaaggtgtcgacgatcttg 722
            |||||||||||||||||||||
Sbjct: 3653 gggaaggtgtcgacgatcttg 3673

---

>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     tactttcttgttctgtttgca 50
              |||||||||||||||||||||
Sbjct: 142947 tactttcttgttctgtttgca 142967

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   tatatttagagatatattaac 164
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     aatgataagtaggtgtattgg 119
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502

---

>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     aatgataagtaggtgtattgg 119
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077

---

>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   aatgataagtaggtgtattgg 119
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331

---

>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     tactttcttgttctgtttgca 50
              |||||||||||||||||||||
Sbjct: 109335 tactttcttgttctgtttgca 109355

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 213     aaacatcagatattaaaagtg 233
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 364   atgcagcaagagatggtgggt 384
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 480  agctgcacacgcttgacattgtcctgctc 508
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 213     aaacatcagatattaaaagtg 233
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    aaacatcagatattaaaagtg 233
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 144  tatatttagagatatattaac 164
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cctttacctcctcctatgca 368
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  cctttacctcctcctatgca 368
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY176327.1| Staphylococcus phage K, complete genome
          Length = 127395

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    aaattaatactttcttgttctgtt 46
             ||||||||| ||||||||||||||
Sbjct: 18058 aaattaataatttcttgttctgtt 18081

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 438  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 497
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 498  ttgtcctgctcctggacgagcatg 521
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cctttacctcctcctatgca 368
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 gtcagcaagctgcacacgct 492
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tcagatattaaaagtggcat 237
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tcagatattaaaagtggcat 237
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tcagatattaaaagtggcat 237
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1
             Contains a pseudogene similar to part of membrane guanylyl
             cyclase, a ribosomal protein S11 (RPS11) pseudogene, a
             novel gene and a CpG island, complete sequence
          Length = 176932

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     ataagctgaagctcaaattaatac 32
             ||||||||| ||||||||||||||
Sbjct: 50313 ataagctgatgctcaaattaatac 50336

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aatatatttagagatatatt 161
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    ttgacattgtcctgctcctg 511
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 246  ggtgtaaaggcagctgccgtcgtcgctc 273
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 166   aaacatgcccagcaatcgcttgga 189
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cctttacctcctcctatgca 368
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   tggcatgcttaaaaggtgta 251
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    ttgacattgtcctgctcctg 511
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 442  catcacccagagctgcctggctca 465
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 cttgctgtgctcctttacctcctc 361
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AY954969.1| Bacteriophage G1, complete genome
          Length = 138715

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     aaattaatactttcttgttctgtt 46
              ||||||||| ||||||||||||||
Sbjct: 121558 aaattaataatttcttgttctgtt 121581

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   cctttacctcctcctatgca 368
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aatatatttagagatatatt 161
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11,
             complete sequence
          Length = 154382

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    tgaatactgagagtgacaaatgat 104
             ||||||||||||||| ||||||||
Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    atcagatattaaaagtggcatgct 240
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,842,360
Number of Sequences: 3902068
Number of extensions: 5842360
Number of successful extensions: 116036
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115584
Number of HSP's gapped (non-prelim): 400
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---