ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal17k16 |
|---|---|
| Clone Library Name | barley_pub |
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 125 bits (314), Expect = 9e-29 Identities = 59/59 (100%), Positives = 59/59 (100%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAAP 407 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAAP Sbjct: 560 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAAP 618
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 124 bits (310), Expect = 3e-28 Identities = 58/59 (98%), Positives = 58/59 (98%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAAP 407 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLA P Sbjct: 565 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAGP 623
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 115 bits (289), Expect = 7e-26 Identities = 54/57 (94%), Positives = 56/57 (98%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAA 410 AGFE VHLGSNAYKQASTLLALFAGGDGY+VEEKEGCLTLGWHTRPLIATSAWR+AA Sbjct: 568 AGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAWRVAA 624
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 111 bits (277), Expect = 2e-24 Identities = 51/57 (89%), Positives = 55/57 (96%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAA 410 +GF VHLGSNAYKQASTLLALFAGGDGY+VEEK+GCLTLGWHTRPLIATSAWR+AA Sbjct: 570 SGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAWRVAA 626
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 101 bits (252), Expect = 1e-21 Identities = 45/56 (80%), Positives = 52/56 (92%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRL 416 ++GF+ VHLGSNA+KQAS LLALFAGGDGY+VEE +GCL LGWHTRPLIATSAW+L Sbjct: 520 SSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKL 575
>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant| protein 1) (VvGAI1) Length = 590 Score = 100 bits (249), Expect = 3e-21 Identities = 46/57 (80%), Positives = 52/57 (91%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLA 413 +AGF+ V+LGSNA+KQAS LLALFAGGDGY+VEE GCL LGWHTRPLIATSAW+LA Sbjct: 521 SAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 577
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 96.3 bits (238), Expect = 6e-20 Identities = 42/57 (73%), Positives = 50/57 (87%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLA 413 +AGF H+GSNA+KQAS LLALF GG+GY+VEE +GCL LGWHTRPLIATSAW+L+ Sbjct: 475 SAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKLS 531
>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)| Length = 579 Score = 94.7 bits (234), Expect = 2e-19 Identities = 42/58 (72%), Positives = 49/58 (84%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAA 410 ++GF HLGSNA+KQAS LLALF GG+GY+VEE GCL LGWHTRPLI TSAW+L+A Sbjct: 520 SSGFAPAHLGSNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAWKLSA 577
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 94.7 bits (234), Expect = 2e-19 Identities = 42/58 (72%), Positives = 49/58 (84%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAA 410 ++GF HLGSNA+KQASTLLALF GG+GY+VEE GCL L WHTRPLI TSAW+L+A Sbjct: 514 SSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAWKLSA 571
>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem| protein B) (GAIP-B) (CmGAIP-B) Length = 587 Score = 93.2 bits (230), Expect = 5e-19 Identities = 41/56 (73%), Positives = 48/56 (85%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRL 416 ++GFE +HLGSNA+KQAS LLALF G+GY+VEE G LTLGWHTRPLI TSAW+L Sbjct: 523 SSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWKL 578
>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem| protein) (GAIP) (CmGAIP) Length = 579 Score = 92.8 bits (229), Expect = 6e-19 Identities = 41/55 (74%), Positives = 48/55 (87%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 419 +AGF+ +HLGSNA+KQAS LLALF G+GY+VEE EG L LGWHTRPLIATSAW+ Sbjct: 516 SAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWK 570
>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)| Length = 511 Score = 92.0 bits (227), Expect = 1e-18 Identities = 42/54 (77%), Positives = 46/54 (85%) Frame = -3 Query: 577 GFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRL 416 GF+ V +GSNAYKQAS LLAL+AG DGY VEE EGCL LGW TRPLIATSAWR+ Sbjct: 454 GFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWRI 507
>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like| protein 19) Length = 547 Score = 91.3 bits (225), Expect = 2e-18 Identities = 39/57 (68%), Positives = 50/57 (87%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLA 413 +AGF+ +HLGS+A+KQAS LL+L+A GDGY+VEE +GCL +GW TRPLI TSAW+LA Sbjct: 491 SAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWKLA 547
>GAI_GOSHI (Q84TQ7) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (GhGAI) Length = 537 Score = 85.9 bits (211), Expect = 8e-17 Identities = 40/49 (81%), Positives = 41/49 (83%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIA 434 AG VHLGSNAYKQAS LLALFA GDGY+VEE GCL LGWHTRPLIA Sbjct: 480 AGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIA 528
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 85.5 bits (210), Expect = 1e-16 Identities = 37/57 (64%), Positives = 45/57 (78%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLA 413 ++G HLGSNA+KQAS LL++F G GY+VEE GCL LGWHTRPLI TSAW+L+ Sbjct: 527 SSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLS 583
>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)| Length = 523 Score = 84.3 bits (207), Expect = 2e-16 Identities = 39/58 (67%), Positives = 48/58 (82%) Frame = -3 Query: 583 NAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRLAA 410 +AGF+ V+LGS+A+KQAS LLAL GGDGY+VEE +G L L W T+PLIA SAW+LAA Sbjct: 462 SAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENDGSLMLAWQTKPLIAASAWKLAA 519
>MOC_ORYSA (Q84MM9) Protein MONOCULM 1| Length = 441 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/54 (46%), Positives = 31/54 (57%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 419 AGF L + A QA LL L +GY V+E G LGW TRPL++ SAW+ Sbjct: 384 AGFAARPLSAFAVSQARLLLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAWQ 437
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/53 (43%), Positives = 31/53 (58%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 422 AGF L S TLL ++ D YK+ E++G L LGW +RPL+ +SAW Sbjct: 493 AGFRPSPLSSLVNATIRTLLQSYS--DNYKLAERDGALYLGWKSRPLVVSSAW 543
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/53 (41%), Positives = 30/53 (56%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 422 AGF L S LLA ++ D Y ++EK+G + LGW +R LI+ SAW Sbjct: 520 AGFRPYPLSSYVNSVIRKLLACYS--DKYTLDEKDGAMLLGWRSRKLISASAW 570
>NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein| Length = 508 Score = 34.3 bits (77), Expect = 0.27 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -3 Query: 577 GFETVHLGSNAYKQASTLLALFAGGDGYKVEEK---EGCLTLGWHTRPLIATSAW 422 GF V + + QA LL LF DGY+VEE L L W +R L++ S W Sbjct: 447 GFRGVPVSFANHCQAKLLLGLF--NDGYRVEEVGVGSNKLVLDWKSRRLLSASLW 499
>CORA_HPBDC (P30027) Core antigen| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/86 (32%), Positives = 34/86 (39%) Frame = -1 Query: 573 SRPCTWAPMPTSRRARCWPSSPAATGTRWKRRKGA*LSGGTRAR*SPLPHGASPRRDREF 394 SR TW P R R P+ A T + G S GTR P G PRR + Sbjct: 209 SRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTSSGTRK-----PRGLEPRRRKVK 263 Query: 393 *TL*VDIVRAWSATTQPRPPARPGSP 316 T+ R+ S + P R GSP Sbjct: 264 TTVVYGRRRSKSRERRAPSPQRAGSP 289
>CORA_HPBDB (P17190) Core antigen| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/86 (32%), Positives = 34/86 (39%) Frame = -1 Query: 573 SRPCTWAPMPTSRRARCWPSSPAATGTRWKRRKGA*LSGGTRAR*SPLPHGASPRRDREF 394 SR TW P R R P+ A T + G S GTR P G PRR + Sbjct: 209 SRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTSSGTRK-----PRGLEPRRRKVK 263 Query: 393 *TL*VDIVRAWSATTQPRPPARPGSP 316 T+ R+ S + P R GSP Sbjct: 264 TTVVYGRRRSKSRDRRAPSPQRAGSP 289
>CORA_HPBDW (P17191) Core antigen| Length = 305 Score = 31.2 bits (69), Expect = 2.3 Identities = 28/86 (32%), Positives = 33/86 (38%) Frame = -1 Query: 573 SRPCTWAPMPTSRRARCWPSSPAATGTRWKRRKGA*LSGGTRAR*SPLPHGASPRRDREF 394 SR TW P R R P+ A T + G S GTR P G PRR + Sbjct: 209 SRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTSSGTRK-----PRGLEPRRRKVK 263 Query: 393 *TL*VDIVRAWSATTQPRPPARPGSP 316 T R+ S + P R GSP Sbjct: 264 TTFVYGRRRSKSRERRAPSPQRAGSP 289
>ATG4_CRYNE (Q5K9L9) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related| protein 4) Length = 1193 Score = 25.4 bits (54), Expect(2) = 2.9 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -1 Query: 366 AWSATTQPRPPARPGSPAHAH 304 +W T P +P SPAH H Sbjct: 403 SWKRNTSLPPTGQPQSPAHVH 423 Score = 23.9 bits (50), Expect(2) = 2.9 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = -3 Query: 532 STLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 419 S L AL GG G VE++ L++ + + S+W+ Sbjct: 368 SNLPALEPGGSGGGVEDRRASLSMNGPSPNSLRPSSWK 405
>NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein| Length = 554 Score = 30.0 bits (66), Expect = 5.1 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 580 AGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWRL 416 AGF G +A LL + KVEE + L W ++P+ S W+L Sbjct: 495 AGFAGEVFGEDAIDGGRALLRKYDNNWEMKVEENSTSVELWWKSQPVSFCSLWKL 549
>CORA_HPBDU (P03154) Core antigen| Length = 305 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/86 (31%), Positives = 34/86 (39%) Frame = -1 Query: 573 SRPCTWAPMPTSRRARCWPSSPAATGTRWKRRKGA*LSGGTRAR*SPLPHGASPRRDREF 394 SR TW P R R P+ A T + G + GTR P G PRR + Sbjct: 209 SRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRK-----PRGLEPRRRKVK 263 Query: 393 *TL*VDIVRAWSATTQPRPPARPGSP 316 T+ R+ S + P R GSP Sbjct: 264 TTVVYGRRRSKSRERRAPTPQRAGSP 289
>LDHD_TREPA (O83080) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH) (D-specific| D-2-hydroxyacid dehydrogenase) Length = 331 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 500 VAAGEEGQQRARLLVGIGAQVHGLEP 577 + G GQ ARL G+GAQV G +P Sbjct: 152 LGTGRIGQAAARLFKGVGAQVVGFDP 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,119,775 Number of Sequences: 219361 Number of extensions: 1486223 Number of successful extensions: 4299 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4296 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
